RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 E2F8A0AVK6 867 aa13□□□□□ -0.33
LDLR-205ENST00000557933 SMAPO00193 183 aa13□□□□□ -0.33
LDLR-205ENST00000557933 PROSCO94903 275 aa13□□□□□ -0.33
LDLR-205ENST00000557933 HLA-DRAP01903 254 aa13□□□□□ -0.33
LDLR-205ENST00000557933 AMPD1P23109 780 aa13□□□□□ -0.33
LDLR-205ENST00000557933 GLRA2P23416 452 aa13□□□□□ -0.33
LDLR-205ENST00000557933 KLRC2P26717 231 aa13□□□□□ -0.33
LDLR-205ENST00000557933 GNA15P30679 374 aa13□□□□□ -0.33
LDLR-205ENST00000557933 ALDH3A1P30838 453 aa13□□□□□ -0.33
LDLR-205ENST00000557933 NEK3P51956 506 aa13□□□□□ -0.33
LDLR-205ENST00000557933 PSMC5P62195 406 aa13□□□□□ -0.33
LDLR-205ENST00000557933 SNX30Q5VWJ9 437 aa13□□□□□ -0.33
LDLR-205ENST00000557933 C3orf62Q6ZUJ4 267 aa13□□□□□ -0.33
LDLR-205ENST00000557933 TMEM143Q96AN5 459 aa13□□□□□ -0.33
LDLR-205ENST00000557933 MCUR1Q96AQ8 359 aa13□□□□□ -0.33
LDLR-205ENST00000557933 TMEM8AQ9HCN3 771 aa13□□□□□ -0.33
LDLR-205ENST00000557933 ATRNL1Q5VV63 1379 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 MEI4A8MW99 385 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 PIK3CDO00329 1044 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 BRD2P25440 801 aaKnown RBP12.99□□□□□ -0.33
LDLR-205ENST00000557933 BASP1P80723 227 aaKnown RBP12.99□□□□□ -0.33
LDLR-205ENST00000557933 DMP1Q13316 513 aaPredicted RBP12.99□□□□□ -0.33
LDLR-205ENST00000557933 TAF5Q15542 800 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 TKFCQ3LXA3 575 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 BRDTQ58F21 947 aaPredicted RBP12.99□□□□□ -0.33
LDLR-205ENST00000557933 DCUN1D2Q6PH85 259 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 RINLQ6ZS11 566 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 RHOT1Q8IXI2 618 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 VPS52Q8N1B4 723 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 GMCL1P1Q8NEA9 526 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 DENND1AQ8TEH3 1009 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 TEKT4Q8WW24 435 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 SCG3Q8WXD2 468 aaKnown RBP12.99□□□□□ -0.33
LDLR-205ENST00000557933 CFAP57Q96MR6 1250 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 FNBP1Q96RU3 617 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 TSC22D3Q99576 134 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 EURLQ9NYK6 297 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 GYG2O15488 501 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 TBX10O75333 385 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 NPM3O75607 178 aaKnown RBP12.99□□□□□ -0.33
LDLR-205ENST00000557933 MTA2O94776 668 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 BAG2O95816 211 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 YARSP54577 528 aaKnown RBP12.99□□□□□ -0.33
LDLR-205ENST00000557933 CYP24A1Q07973 514 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 THOC5Q13769 683 aaKnown RBP12.99□□□□□ -0.33
LDLR-205ENST00000557933 CLUL1Q15846 466 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 TDRD10Q5VZ19 366 aaKnown RBP12.99□□□□□ -0.33
LDLR-205ENST00000557933 KBTBD2Q8IY47 623 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 OR5B17Q8NGF7 314 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 USP6NLQ92738 828 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 PAFAH2Q99487 392 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 TTC1Q99614 292 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 WDR83Q9BRX9 315 aaKnown RBP12.99□□□□□ -0.33
LDLR-205ENST00000557933 BATF3Q9NR55 127 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 CORO1CQ9ULV4 474 aaPredicted RBP12.99□□□□□ -0.33
LDLR-205ENST00000557933 C2CD2Q9Y426 696 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 ZNFX1Q9P2E3 1918 aaKnown RBP12.99□□□□□ -0.33
LDLR-205ENST00000557933 CLUHO75153 1309 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 CYB561D2O14569 222 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 LIASO43766 372 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 PEX10O60683 326 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 ITGBL1O95965 494 aaPredicted RBP12.99□□□□□ -0.33
LDLR-205ENST00000557933 ENO1P06733 434 aaKnown RBP12.99□□□□□ -0.33
LDLR-205ENST00000557933 F7P08709 466 aaPredicted RBP12.99□□□□□ -0.33
LDLR-205ENST00000557933 ETS2P15036 469 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 OSTNP61366 133 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 GTF2BQ00403 316 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 R3HDM1Q15032 1099 aaKnown RBP12.99□□□□□ -0.33
LDLR-205ENST00000557933 PDK4Q16654 411 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 IGDCC3Q8IVU1 814 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 CTAGE3PQ8IX95 158 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 ZCCHC9Q8N567 271 aaKnown RBP12.99□□□□□ -0.33
LDLR-205ENST00000557933 PYROXD1Q8WU10 500 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 WNK4Q96J92 1243 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 SLC13A1Q9BZW2 595 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 LGALS13Q9UHV8 139 aa12.99□□□□□ -0.33
LDLR-205ENST00000557933 H3BRJ5 948 aa12.98□□□□□ -0.33
LDLR-205ENST00000557933 NVLO15381 856 aaKnown RBP12.98□□□□□ -0.33
LDLR-205ENST00000557933 WEE2P0C1S8 567 aa12.98□□□□□ -0.33
LDLR-205ENST00000557933 RFX1P22670 979 aa12.98□□□□□ -0.33
LDLR-205ENST00000557933 ZNF252P-AS1Q0IIN9 211 aa12.98□□□□□ -0.33
LDLR-205ENST00000557933 BMPR2Q13873 1038 aa12.98□□□□□ -0.33
LDLR-205ENST00000557933 MTERF2Q49AM1 385 aa12.98□□□□□ -0.33
LDLR-205ENST00000557933 RAB6CQ53S08 254 aa12.98□□□□□ -0.33
LDLR-205ENST00000557933 DACT2Q5SW24 774 aa12.98□□□□□ -0.33
LDLR-205ENST00000557933 ZCCHC23Q6ZST2 131 aa12.98□□□□□ -0.33
LDLR-205ENST00000557933 PDCD7Q8N8D1 485 aaKnown RBP12.98□□□□□ -0.33
LDLR-205ENST00000557933 FBXO36Q8NEA4 188 aa12.98□□□□□ -0.33
LDLR-205ENST00000557933 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.98□□□□□ -0.33
LDLR-205ENST00000557933 ASAP3Q8TDY4 903 aa12.98□□□□□ -0.33
LDLR-205ENST00000557933 FAM161BQ96MY7 647 aa12.98□□□□□ -0.33
LDLR-205ENST00000557933 RAB6CQ9H0N0 254 aa12.98□□□□□ -0.33
LDLR-205ENST00000557933 GABBR1Q9UBS5 961 aa12.98□□□□□ -0.33
LDLR-205ENST00000557933 AGTPBP1Q9UPW5 1226 aa12.98□□□□□ -0.33
LDLR-205ENST00000557933 STARD13Q9Y3M8 1113 aa12.98□□□□□ -0.33
LDLR-205ENST00000557933 DNALI1O14645 258 aaPredicted RBP12.98□□□□□ -0.33
LDLR-205ENST00000557933 MARK3P27448 753 aa12.98□□□□□ -0.33
LDLR-205ENST00000557933 GMPRP36959 345 aa12.98□□□□□ -0.33
LDLR-205ENST00000557933 CCNG2Q16589 344 aa12.98□□□□□ -0.33
LDLR-205ENST00000557933 NFIL3Q16649 462 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms