RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	4.63	□□□□□ -1.67
USP44-208	ENST00000552440	TDRD9	Q8NDG6	1382 aa	Known RBP	4.63	□□□□□ -1.67
USP44-208	ENST00000552440	PPP1R14C	Q8TAE6	165 aa		4.63	□□□□□ -1.67
USP44-208	ENST00000552440	STT3B	Q8TCJ2	826 aa		4.63	□□□□□ -1.67
USP44-208	ENST00000552440	RBM18	Q96H35	190 aa	Known RBP	4.63	□□□□□ -1.67
USP44-208	ENST00000552440	ZNF845	Q96IR2	970 aa	Predicted RBP	4.63	□□□□□ -1.67
USP44-208	ENST00000552440	MOGAT1	Q96PD6	335 aa		4.63	□□□□□ -1.67
USP44-208	ENST00000552440	C7orf25	Q9BPX7	421 aa		4.63	□□□□□ -1.67
USP44-208	ENST00000552440	SPATA25	Q9BR10	227 aa		4.63	□□□□□ -1.67
USP44-208	ENST00000552440	PDCD2L	Q9BRP1	358 aa		4.63	□□□□□ -1.67
USP44-208	ENST00000552440	QRSL1	Q9H0R6	528 aa	Known RBP	4.63	□□□□□ -1.67
USP44-208	ENST00000552440	RANBP17	Q9H2T7	1088 aa	Known RBP	4.63	□□□□□ -1.67
USP44-208	ENST00000552440	ACAD9	Q9H845	621 aa		4.63	□□□□□ -1.67
USP44-208	ENST00000552440	TMEM160	Q9NX00	188 aa		4.63	□□□□□ -1.67
USP44-208	ENST00000552440	BTG4	Q9NY30	223 aa		4.63	□□□□□ -1.67
USP44-208	ENST00000552440	RASAL2	Q9UJF2	1139 aa		4.63	□□□□□ -1.67
USP44-208	ENST00000552440	RPS6KA6	Q9UK32	745 aa		4.63	□□□□□ -1.67
USP44-208	ENST00000552440		A0A088AWK7	358 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440		A0A0B4J269	797 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	hCG_1807616	A0A1W2PRN6	198 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	ERICH4	A6NGS2	130 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440		F8W8V4	182 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	SCD	O00767	359 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	PRICKLE3	O43900	615 aa	Predicted RBP	4.62	□□□□□ -1.67
USP44-208	ENST00000552440	TSPAN3	O60637	253 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	PPP1R11	O60927	126 aa	Predicted RBP	4.62	□□□□□ -1.67
USP44-208	ENST00000552440	CLASP2	O75122	1294 aa	Known RBP	4.62	□□□□□ -1.67
USP44-208	ENST00000552440	GUCA1C	O95843	209 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	PLAT	P00750	562 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	PLA2G1B	P04054	148 aa	Known RBP	4.62	□□□□□ -1.67
USP44-208	ENST00000552440	ITGB3	P05106	788 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	HDC	P19113	662 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	MSH2	P43246	934 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	SLC16A1	P53985	500 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	RAB1A	P62820	205 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	SEMA3A	Q14563	771 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	WTAP	Q15007	396 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	SF3B3	Q15393	1217 aa	Known RBP	4.62	□□□□□ -1.67
USP44-208	ENST00000552440	FIGN	Q5HY92	759 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	ACAD10	Q6JQN1	1059 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	BORA	Q6PGQ7	559 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	C16orf87	Q6PH81	154 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	IL27RA	Q6UWB1	636 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	KCNK18	Q7Z418	384 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	GALNT7	Q86SF2	657 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	HERC6	Q8IVU3	1022 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	CCDC170	Q8IYT3	715 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	CEP70	Q8NHQ1	597 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	ST8SIA4	Q92187	359 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	C16orf92	Q96LL3	132 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	SAMD11	Q96NU1	681 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	PIGS	Q96S52	555 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	HEPH	Q9BQS7	1158 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	BRIP1	Q9BX63	1249 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	EPB41L1	Q9H4G0	881 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	C14orf93	Q9H972	538 aa	Known RBP	4.62	□□□□□ -1.67
USP44-208	ENST00000552440	ZMAT3	Q9HA38	289 aa	Known RBP	4.62	□□□□□ -1.67
USP44-208	ENST00000552440	ZNF287	Q9HBT7	754 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	KCND1	Q9NSA2	647 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	MSRA	Q9UJ68	235 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	FEM1B	Q9UK73	627 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	PCDHGB4	Q9UN71	923 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	SNX8	Q9Y5X2	465 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	NR2E3	Q9Y5X4	410 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440		X6R8D5	127 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	CCDC69	A6NI79	296 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	CYP2C8	P10632	490 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	ALAS1	P13196	640 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	INSRR	P14616	1297 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	TACR1	P25103	407 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	HADHA	P40939	763 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	CCR5	P51681	352 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	UBE3A	Q05086	875 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	LRRC74A	Q0VAA2	488 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	ACVR2B	Q13705	512 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	PPA1	Q15181	289 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	UBE3C	Q15386	1083 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	FAM26F	Q5R3K3	315 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	PRPF39	Q86UA1	669 aa	Known RBP	4.62	□□□□□ -1.67
USP44-208	ENST00000552440	CHD1L	Q86WJ1	897 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	DCP2	Q8IU60	420 aa	Known RBP	4.62	□□□□□ -1.67
USP44-208	ENST00000552440	RIOX2	Q8IUF8	465 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	UNC45B	Q8IWX7	931 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	RPAP2	Q8IXW5	612 aa	Predicted RBP	4.62	□□□□□ -1.67
USP44-208	ENST00000552440	TXLNB	Q8N3L3	684 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	LRRC71	Q8N4P6	559 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	NGEF	Q8N5V2	710 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	TTLL6	Q8N841	843 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	PLBD2	Q8NHP8	589 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	PIP4K2C	Q8TBX8	421 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	UTP15	Q8TED0	518 aa	Known RBP	4.62	□□□□□ -1.67
USP44-208	ENST00000552440	RTF1	Q92541	710 aa	Known RBP	4.62	□□□□□ -1.67
USP44-208	ENST00000552440	RUBCN	Q92622	972 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	ANKS1A	Q92625	1134 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	ANP32B	Q92688	251 aa	Known RBP	4.62	□□□□□ -1.67
USP44-208	ENST00000552440	TAF4B	Q92750	862 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	PPP1R9B	Q96SB3	815 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	AP5M1	Q9H0R1	490 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	SMPD4	Q9NXE4	827 aa		4.62	□□□□□ -1.67
USP44-208	ENST00000552440	MARCH2	Q9P0N8	246 aa		4.62	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms