RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 ARID3BQ8IVW6 561 aaPredicted RBP11.71□□□□□ -0.53
VTI1BP3-201ENST00000550220 CSGALNACT1Q8TDX6 532 aa11.71□□□□□ -0.53
VTI1BP3-201ENST00000550220 LEO1Q8WVC0 666 aaPredicted RBP11.71□□□□□ -0.53
VTI1BP3-201ENST00000550220 CBWD1Q9BRT8 395 aa11.71□□□□□ -0.53
VTI1BP3-201ENST00000550220 FAM126AQ9BYI3 521 aaPredicted RBP11.71□□□□□ -0.53
VTI1BP3-201ENST00000550220 CRISPLD1Q9H336 500 aa11.71□□□□□ -0.53
VTI1BP3-201ENST00000550220 TASP1Q9H6P5 420 aa11.71□□□□□ -0.53
VTI1BP3-201ENST00000550220 C8orf33Q9H7E9 229 aaPredicted RBP11.71□□□□□ -0.53
VTI1BP3-201ENST00000550220 ABCB6Q9NP58 842 aa11.71□□□□□ -0.53
VTI1BP3-201ENST00000550220 THG1LQ9NWX6 298 aaKnown RBP11.71□□□□□ -0.53
VTI1BP3-201ENST00000550220 GDAP2Q9NXN4 497 aa11.71□□□□□ -0.53
VTI1BP3-201ENST00000550220 UBE4BO95155 1302 aa11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 PVALEFA0A1B0GWK0 134 aa11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 TNNC2P02585 160 aa11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 KRT19P08727 400 aa11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 FAM163BP0C2L3 166 aa11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 HAPLN1P10915 354 aaPredicted RBP11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 GJA1P17302 382 aa11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 GABRR2P28476 465 aa11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 PCSK1P29120 753 aa11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 VIPR2P41587 438 aa11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 ME1P48163 572 aa11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 RPL10AP62906 217 aaKnown RBP11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 ASIC1P78348 528 aa11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 ARHGAP29Q52LW3 1261 aa11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 FAM26FQ5R3K3 315 aa11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 POTEHQ6S545 545 aa11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 SHC4Q6S5L8 630 aa11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 GAREM2Q75VX8 874 aa11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 HS2ST1Q7LGA3 356 aa11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 TMEM130Q8N3G9 435 aa11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 C1orf127Q8N9H9 656 aa11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 ZNF507Q8TCN5 953 aa11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 ATRIPQ8WXE1 791 aa11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 FAM3CQ92520 227 aa11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 DHX58Q96C10 678 aa11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 TMEM209Q96SK2 561 aa11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 PCIF1Q9H4Z3 704 aa11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 UXTQ9UBK9 157 aaPredicted RBP11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 MTF2Q9Y483 593 aaPredicted RBP11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 PCDHGA2Q9Y5H1 932 aa11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 DOCK6Q96HP0 2047 aa11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 FAM186AA6NE01 2351 aa11.7□□□□□ -0.54
VTI1BP3-201ENST00000550220 GOLGA8IPA6NC78 632 aa11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 GOLGA8JA6NMD2 632 aa11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 POLR2DO15514 142 aaKnown RBP11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 F13A1P00488 732 aa11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 CSH1P0DML2 217 aa11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 CSH2P0DML3 217 aa11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 CD72P21854 359 aa11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 TARSP26639 723 aaKnown RBP11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 NRLP54845 237 aa11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 BFSP1Q12934 665 aa11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 MAPRE1Q15691 268 aaKnown RBP11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 GPR158Q5T848 1215 aa11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 UNC13DQ70J99 1090 aa11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 LRRTM3Q86VH5 581 aa11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 WDR49Q8IV35 697 aa11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 ADSSL1Q8N142 457 aa11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 PDCL2Q8N4E4 241 aa11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 CELF5Q8N6W0 485 aaKnown RBP11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 GOLGA5Q8TBA6 731 aa11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 NOC3LQ8WTT2 800 aaKnown RBP11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 FUBP3Q96I24 572 aaKnown RBP eCLIP11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 CEP295NLQ96MC4 621 aa11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 FNBP1Q96RU3 617 aa11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 IKZF4Q9H2S9 585 aa11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 PDE11AQ9HCR9 933 aa11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 INTS13Q9NVM9 706 aa11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 DDX43Q9NXZ2 648 aaKnown RBP11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 ABI2Q9NYB9 513 aaPredicted RBP11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 HSPBP1Q9NZL4 362 aa11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 SNX9Q9Y5X1 595 aa11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 PIAS3Q9Y6X2 628 aa11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 F5P12259 2224 aa11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 NOTCH4Q99466 2003 aa11.69□□□□□ -0.54
VTI1BP3-201ENST00000550220 GABRDO14764 452 aa11.68□□□□□ -0.54
VTI1BP3-201ENST00000550220 KINO60870 393 aaKnown RBP11.68□□□□□ -0.54
VTI1BP3-201ENST00000550220 LRRN2O75325 713 aa11.68□□□□□ -0.54
VTI1BP3-201ENST00000550220 SOAT2O75908 522 aa11.68□□□□□ -0.54
VTI1BP3-201ENST00000550220 MYL1P05976 194 aa11.68□□□□□ -0.54
VTI1BP3-201ENST00000550220 ATF6P18850 670 aa11.68□□□□□ -0.54
VTI1BP3-201ENST00000550220 AVPR1AP37288 418 aa11.68□□□□□ -0.54
VTI1BP3-201ENST00000550220 KPNA1P52294 538 aaPredicted RBP11.68□□□□□ -0.54
VTI1BP3-201ENST00000550220 AMPD2Q01433 879 aa11.68□□□□□ -0.54
VTI1BP3-201ENST00000550220 CSTF1Q05048 431 aaKnown RBP11.68□□□□□ -0.54
VTI1BP3-201ENST00000550220 LRRC32Q14392 662 aa11.68□□□□□ -0.54
VTI1BP3-201ENST00000550220 CFAP221Q4G0U5 840 aa11.68□□□□□ -0.54
VTI1BP3-201ENST00000550220 INTS6LQ5JSJ4 861 aaKnown RBP11.68□□□□□ -0.54
VTI1BP3-201ENST00000550220 DGKKQ5KSL6 1271 aa11.68□□□□□ -0.54
VTI1BP3-201ENST00000550220 C4orf50Q6ZRC1 276 aa11.68□□□□□ -0.54
VTI1BP3-201ENST00000550220 EPM2AIP1Q7L775 607 aaPredicted RBP11.68□□□□□ -0.54
VTI1BP3-201ENST00000550220 RALGPS2Q86X27 583 aaPredicted RBP11.68□□□□□ -0.54
VTI1BP3-201ENST00000550220 CEP57L1Q8IYX8 460 aa11.68□□□□□ -0.54
VTI1BP3-201ENST00000550220 CXorf38Q8TB03 319 aa11.68□□□□□ -0.54
VTI1BP3-201ENST00000550220 BPIFB1Q8TDL5 484 aa11.68□□□□□ -0.54
VTI1BP3-201ENST00000550220 EXOC4Q96A65 974 aa11.68□□□□□ -0.54
VTI1BP3-201ENST00000550220 HPDLQ96IR7 371 aa11.68□□□□□ -0.54
VTI1BP3-201ENST00000550220 LPIN3Q9BQK8 851 aa11.68□□□□□ -0.54
VTI1BP3-201ENST00000550220 MTMR12Q9C0I1 747 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms