RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 TRIM5Q9C035 493 aa22.63■■□□□ 1.21
VPS29-206ENST00000549578 DPEP3Q9H4B8 488 aa22.63■■□□□ 1.21
VPS29-206ENST00000549578 BARX2Q9UMQ3 279 aaPredicted RBP22.63■■□□□ 1.21
VPS29-206ENST00000549578 OR6C75A6NL08 312 aa22.62■■□□□ 1.21
VPS29-206ENST00000549578 CILPO75339 1184 aa22.62■■□□□ 1.21
VPS29-206ENST00000549578 IGFBP4P22692 258 aa22.62■■□□□ 1.21
VPS29-206ENST00000549578 OR1D2P34982 312 aa22.62■■□□□ 1.21
VPS29-206ENST00000549578 PBX1P40424 430 aa22.62■■□□□ 1.21
VPS29-206ENST00000549578 CDR1P51861 262 aa22.62■■□□□ 1.21
VPS29-206ENST00000549578 MFAP3P55082 362 aa22.62■■□□□ 1.21
VPS29-206ENST00000549578 PSMC1P62191 440 aaKnown RBP22.62■■□□□ 1.21
VPS29-206ENST00000549578 CREMQ03060 361 aa22.62■■□□□ 1.21
VPS29-206ENST00000549578 CCDC142Q17RM4 750 aa22.62■■□□□ 1.21
VPS29-206ENST00000549578 ZNF394Q53GI3 561 aa22.62■■□□□ 1.21
VPS29-206ENST00000549578 UBR7Q8N806 425 aa22.62■■□□□ 1.21
VPS29-206ENST00000549578 KLHL5Q96PQ7 755 aa22.62■■□□□ 1.21
VPS29-206ENST00000549578 EMILIN2Q9BXX0 1053 aa22.62■■□□□ 1.21
VPS29-206ENST00000549578 FNIP2Q9P278 1114 aa22.62■■□□□ 1.21
VPS29-206ENST00000549578 MTCH2Q9Y6C9 303 aa22.62■■□□□ 1.21
VPS29-206ENST00000549578 PRRC2BQ5JSZ5 2229 aaKnown RBP22.62■■□□□ 1.21
VPS29-206ENST00000549578 PER2O15055 1255 aa22.62■■□□□ 1.21
VPS29-206ENST00000549578 ATP2C2O75185 946 aa22.62■■□□□ 1.21
VPS29-206ENST00000549578 ACO1P21399 889 aaKnown RBP22.62■■□□□ 1.21
VPS29-206ENST00000549578 PCSK1P29120 753 aa22.62■■□□□ 1.21
VPS29-206ENST00000549578 NDUFV1P49821 464 aa22.62■■□□□ 1.21
VPS29-206ENST00000549578 POLR2FP61218 127 aaKnown RBP22.62■■□□□ 1.21
VPS29-206ENST00000549578 RAPGEF1Q13905 1077 aa22.62■■□□□ 1.21
VPS29-206ENST00000549578 SLC8B1Q6J4K2 584 aa22.62■■□□□ 1.21
VPS29-206ENST00000549578 ENOSF1Q7L5Y1 443 aa22.62■■□□□ 1.21
VPS29-206ENST00000549578 RBM23Q86U06 439 aaKnown RBP22.62■■□□□ 1.21
VPS29-206ENST00000549578 WHAMMQ8TF30 809 aa22.62■■□□□ 1.21
VPS29-206ENST00000549578 GAS2L1Q99501 681 aaPredicted RBP22.62■■□□□ 1.21
VPS29-206ENST00000549578 SYT15Q9BQS2 421 aa22.62■■□□□ 1.21
VPS29-206ENST00000549578 ACBD6Q9BR61 282 aa22.62■■□□□ 1.21
VPS29-206ENST00000549578 PCDHB4Q9Y5E5 795 aa22.62■■□□□ 1.21
VPS29-206ENST00000549578 YWHAEP62258 255 aaKnown RBP22.61■■□□□ 1.21
VPS29-206ENST00000549578 ROR1Q01973 937 aa22.61■■□□□ 1.21
VPS29-206ENST00000549578 UNC93AQ86WB7 457 aa22.61■■□□□ 1.21
VPS29-206ENST00000549578 MYLIPQ8WY64 445 aa22.61■■□□□ 1.21
VPS29-206ENST00000549578 FAM81BQ96LP2 452 aa22.61■■□□□ 1.21
VPS29-206ENST00000549578 GUCD1Q96NT3 240 aa22.61■■□□□ 1.21
VPS29-206ENST00000549578 CDX2Q99626 313 aaPredicted RBP22.61■■□□□ 1.21
VPS29-206ENST00000549578 LPIN3Q9BQK8 851 aa22.61■■□□□ 1.21
VPS29-206ENST00000549578 NAA15Q9BXJ9 866 aaKnown RBP22.61■■□□□ 1.21
VPS29-206ENST00000549578 OXCT2Q9BYC2 517 aaPredicted RBP22.61■■□□□ 1.21
VPS29-206ENST00000549578 ELOVL4Q9GZR5 314 aa22.61■■□□□ 1.21
VPS29-206ENST00000549578 NLRC4Q9NPP4 1024 aa22.61■■□□□ 1.21
VPS29-206ENST00000549578 LMCD1Q9NZU5 365 aa22.61■■□□□ 1.21
VPS29-206ENST00000549578 CDH9Q9ULB4 789 aa22.61■■□□□ 1.21
VPS29-206ENST00000549578 ADH1AP07327 375 aa22.6■■□□□ 1.21
VPS29-206ENST00000549578 CPB1P15086 417 aa22.6■■□□□ 1.21
VPS29-206ENST00000549578 RFX1P22670 979 aa22.6■■□□□ 1.21
VPS29-206ENST00000549578 KLRC2P26717 231 aa22.6■■□□□ 1.21
VPS29-206ENST00000549578 TSPY1Q01534 308 aa22.6■■□□□ 1.21
VPS29-206ENST00000549578 INTS6LQ5JSJ4 861 aaKnown RBP22.6■■□□□ 1.21
VPS29-206ENST00000549578 TMEM270Q6UE05 265 aa22.6■■□□□ 1.21
VPS29-206ENST00000549578 ACOT1Q86TX2 421 aa22.6■■□□□ 1.21
VPS29-206ENST00000549578 LRRTM3Q86VH5 581 aa22.6■■□□□ 1.21
VPS29-206ENST00000549578 PALB2Q86YC2 1186 aa22.6■■□□□ 1.21
VPS29-206ENST00000549578 TTC39CQ8N584 583 aa22.6■■□□□ 1.21
VPS29-206ENST00000549578 NT5C1AQ9BXI3 368 aa22.6■■□□□ 1.21
VPS29-206ENST00000549578 ZCWPW1Q9H0M4 648 aa22.6■■□□□ 1.21
VPS29-206ENST00000549578 NSUN3Q9H649 340 aaKnown RBP22.6■■□□□ 1.21
VPS29-206ENST00000549578 TLE6Q9H808 572 aa22.6■■□□□ 1.21
VPS29-206ENST00000549578 CRTAC1Q9NQ79 661 aa22.6■■□□□ 1.21
VPS29-206ENST00000549578 WDR27A2RRH5 827 aa22.59■■□□□ 1.21
VPS29-206ENST00000549578 MYBPHLA2RUH7 354 aa22.59■■□□□ 1.21
VPS29-206ENST00000549578 CLASP2O75122 1294 aaKnown RBP22.59■■□□□ 1.21
VPS29-206ENST00000549578 PNMA6AP0CW24 399 aaPredicted RBP22.59■■□□□ 1.21
VPS29-206ENST00000549578 TRIM21P19474 475 aaKnown RBP22.59■■□□□ 1.21
VPS29-206ENST00000549578 NRIP1P48552 1158 aa22.59■■□□□ 1.21
VPS29-206ENST00000549578 RAD23BP54727 409 aa22.59■■□□□ 1.21
VPS29-206ENST00000549578 DRAP1Q14919 205 aaPredicted RBP22.59■■□□□ 1.21
VPS29-206ENST00000549578 SLC39A12Q504Y0 691 aa22.59■■□□□ 1.21
VPS29-206ENST00000549578 TCEAL5Q5H9L2 206 aa22.59■■□□□ 1.21
VPS29-206ENST00000549578 B3GALNT2Q8NCR0 500 aa22.59■■□□□ 1.21
VPS29-206ENST00000549578 SHC3Q92529 594 aa22.59■■□□□ 1.21
VPS29-206ENST00000549578 JAKMIP2Q96AA8 810 aa22.59■■□□□ 1.21
VPS29-206ENST00000549578 GPR88Q9GZN0 384 aa22.59■■□□□ 1.21
VPS29-206ENST00000549578 FAM124BQ9H5Z6 455 aaPredicted RBP22.59■■□□□ 1.21
VPS29-206ENST00000549578 TMLHEQ9NVH6 421 aa22.59■■□□□ 1.21
VPS29-206ENST00000549578 GTF3C4Q9UKN8 822 aa22.59■■□□□ 1.21
VPS29-206ENST00000549578 RNF225M0QZC1 329 aaPredicted RBP22.58■■□□□ 1.21
VPS29-206ENST00000549578 KRT5P13647 590 aa22.58■■□□□ 1.21
VPS29-206ENST00000549578 PTPN1P18031 435 aaKnown RBP22.58■■□□□ 1.21
VPS29-206ENST00000549578 POU3F3P20264 500 aaPredicted RBP22.58■■□□□ 1.21
VPS29-206ENST00000549578 USP8P40818 1118 aa22.58■■□□□ 1.21
VPS29-206ENST00000549578 ZNF75DP51815 510 aa22.58■■□□□ 1.21
VPS29-206ENST00000549578 RAB33AQ14088 237 aa22.58■■□□□ 1.21
VPS29-206ENST00000549578 RNF19BQ6ZMZ0 732 aa22.58■■□□□ 1.21
VPS29-206ENST00000549578 SLC4A11Q8NBS3 891 aa22.58■■□□□ 1.21
VPS29-206ENST00000549578 RBBP8NLQ8NC74 664 aaPredicted RBP22.58■■□□□ 1.21
VPS29-206ENST00000549578 TNIP3Q96KP6 325 aa22.58■■□□□ 1.21
VPS29-206ENST00000549578 PGLYRP2Q96PD5 576 aa22.58■■□□□ 1.21
VPS29-206ENST00000549578 PKMYT1Q99640 499 aa22.58■■□□□ 1.21
VPS29-206ENST00000549578 STK33Q9BYT3 514 aa22.58■■□□□ 1.21
VPS29-206ENST00000549578 MTMR10Q9NXD2 777 aa22.58■■□□□ 1.21
VPS29-206ENST00000549578 REV3LO60673 3130 aa22.58■■□□□ 1.2
VPS29-206ENST00000549578 FSD2A1L4K1 749 aa22.57■■□□□ 1.2
VPS29-206ENST00000549578 GOLGA6L3A6NEY3 463 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms