RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	CLCN3	P51790	818 aa		13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	CYP4F22	Q6NT55	531 aa		13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	ANKS1B	Q7Z6G8	1248 aa		13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	MAGEB18	Q96M61	343 aa		13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	PAIP2	Q9BPZ3	127 aa	Known RBP	13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	INO80B	Q9C086	356 aa	Predicted RBP	13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	EBF2	Q9HAK2	575 aa		13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	NKIRAS1	Q9NYS0	192 aa		13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	UST	Q9Y2C2	406 aa		13.23	□□□□□ -0.29
RNF4-222	ENST00000541204	WDR90	Q96KV7	1748 aa		13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	ACO1	P21399	889 aa	Known RBP	13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	TAS2R40	P59535	323 aa		13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	CLDN10	P78369	228 aa		13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	TFAM	Q00059	246 aa	Known RBP	13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	TMED2	Q15363	201 aa		13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	FAM47E	Q6ZV65	393 aa		13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	ENOSF1	Q7L5Y1	443 aa		13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	CEP120	Q8N960	986 aa		13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	RBBP8NL	Q8NC74	664 aa	Predicted RBP	13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	NSMCE1	Q8WV22	266 aa		13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	THOC1	Q96FV9	657 aa	Known RBP	13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	CGRRF1	Q99675	332 aa		13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	AVEN	Q9NQS1	362 aa	Predicted RBP	13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	LGALS13	Q9UHV8	139 aa		13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	ADGRA2	Q96PE1	1338 aa		13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	SPDYE5	A6NIY4	337 aa		13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	RASA4B	C9J798	803 aa		13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	RASA4	O43374	803 aa		13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	MSC	O60682	206 aa		13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	ZC3H11A	O75152	810 aa	Known RBP eCLIP	13.22	□□□□□ -0.29	1e-9	■■■■□ 22
RNF4-222	ENST00000541204	PRKCB	P05771	671 aa		13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	TGFB3	P10600	412 aa		13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	ALAD	P13716	330 aa		13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	FOXN2	P32314	431 aa		13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	CLNS1A	P54105	237 aa	Known RBP	13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	MYL6	P60660	151 aa		13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	CENPC	Q03188	943 aa		13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	CELF3	Q5SZQ8	465 aa	Known RBP	13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	GSTA5	Q7RTV2	222 aa		13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	FAM81B	Q96LP2	452 aa		13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	SPON1	Q9HCB6	807 aa		13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	ARHGEF3	Q9NR81	526 aa		13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	KLHL11	Q9NVR0	708 aa		13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	KLHL14	Q9P2G3	628 aa		13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	KCNG1	Q9UIX4	513 aa		13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	SUFU	Q9UMX1	484 aa		13.22	□□□□□ -0.29
RNF4-222	ENST00000541204	ZBTB42	B2RXF5	422 aa		13.21	□□□□□ -0.29
RNF4-222	ENST00000541204	PROSC	O94903	275 aa		13.21	□□□□□ -0.29
RNF4-222	ENST00000541204	LDHA	P00338	332 aa	Known RBP	13.21	□□□□□ -0.29
RNF4-222	ENST00000541204	WEE2	P0C1S8	567 aa		13.21	□□□□□ -0.29
RNF4-222	ENST00000541204	TAC1	P20366	129 aa		13.21	□□□□□ -0.29
RNF4-222	ENST00000541204	P3H1	Q32P28	736 aa		13.21	□□□□□ -0.29
RNF4-222	ENST00000541204	ECHDC2	Q86YB7	292 aa		13.21	□□□□□ -0.29
RNF4-222	ENST00000541204	CCDC89	Q8N998	374 aa		13.21	□□□□□ -0.29
RNF4-222	ENST00000541204	ANKLE1	Q8NAG6	615 aa		13.21	□□□□□ -0.29
RNF4-222	ENST00000541204	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.21	□□□□□ -0.29
RNF4-222	ENST00000541204	RBM15	Q96T37	977 aa	Known RBP eCLIP	13.21	□□□□□ -0.29
RNF4-222	ENST00000541204	MRPL4	Q9BYD3	311 aa	Known RBP	13.21	□□□□□ -0.29
RNF4-222	ENST00000541204	OSBPL8	Q9BZF1	889 aa		13.21	□□□□□ -0.29
RNF4-222	ENST00000541204	SPAG7	O75391	227 aa		13.21	□□□□□ -0.29
RNF4-222	ENST00000541204	TOM1L1	O75674	476 aa		13.21	□□□□□ -0.29
RNF4-222	ENST00000541204	PIGR	P01833	764 aa		13.21	□□□□□ -0.29
RNF4-222	ENST00000541204	MTFR1	Q15390	333 aa		13.21	□□□□□ -0.29
RNF4-222	ENST00000541204	CCNG2	Q16589	344 aa		13.21	□□□□□ -0.29
RNF4-222	ENST00000541204	MAPK6	Q16659	721 aa		13.21	□□□□□ -0.29
RNF4-222	ENST00000541204	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	13.21	□□□□□ -0.29
RNF4-222	ENST00000541204	MON1B	Q7L1V2	547 aa		13.21	□□□□□ -0.29
RNF4-222	ENST00000541204	ASRGL1	Q7L266	308 aa		13.21	□□□□□ -0.29
RNF4-222	ENST00000541204	CCHCR1	Q8TD31	782 aa		13.21	□□□□□ -0.29
RNF4-222	ENST00000541204	CCDC77	Q9BR77	488 aa		13.21	□□□□□ -0.29
RNF4-222	ENST00000541204	PITPNM3	Q9BZ71	974 aa		13.21	□□□□□ -0.29
RNF4-222	ENST00000541204	IMPG2	Q9BZV3	1241 aa		13.21	□□□□□ -0.29
RNF4-222	ENST00000541204	RNPEP	Q9H4A4	650 aa		13.21	□□□□□ -0.29
RNF4-222	ENST00000541204	ADAM22	Q9P0K1	906 aa		13.21	□□□□□ -0.29
RNF4-222	ENST00000541204	CXCL11	O14625	94 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	SLC25A27	O95847	323 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	MYBL1	P10243	752 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	ABCD1	P33897	745 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	MSH2	P43246	934 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	MAGEA4	P43358	317 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	WDR4	P57081	412 aa	Known RBP	13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	STAT4	Q14765	748 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	RHOT1	Q8IXI2	618 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	GLIS1	Q8NBF1	620 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	MIEF2	Q96C03	454 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	PLCD4	Q9BRC7	762 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	TMEM134	Q9H6X4	195 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	EURL	Q9NYK6	297 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	C15orf41	Q9Y2V0	281 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	CYP1A1	P04798	512 aa	Predicted RBP	13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	KRT19	P08727	400 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	KLRC2	P26717	231 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	GJA5	P36382	358 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	IER5	Q5VY09	327 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	KAZN	Q674X7	775 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	EFCAB12	Q6NXP0	572 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	PPP1R21	Q6ZMI0	780 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	ZBTB8OS	Q8IWT0	167 aa		13.2	□□□□□ -0.3
RNF4-222	ENST00000541204	TMEM192	Q8IY95	271 aa		13.2	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms