RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 SYN3O14994 580 aa20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 CALCAP01258 141 aa20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 SKILP12757 684 aa20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 GNL1P36915 607 aaPredicted RBP20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 RAD23BP54727 409 aa20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 ELAVL2Q12926 359 aaKnown RBP20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 MEA1Q16626 185 aa20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 TSR1Q2NL82 804 aaKnown RBP20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 HGSNATQ68CP4 663 aa20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 SMYD5Q6GMV2 418 aa20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 CEP57Q86XR8 500 aa20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 TMEM169Q96HH4 297 aa20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 B3GALT6Q96L58 329 aa20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 DDX43Q9NXZ2 648 aaKnown RBP20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 DSEQ9UL01 958 aa20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 COL4A4P53420 1690 aaPredicted RBP20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 EPOPA6NHQ4 379 aa20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 PDGFRBP09619 1106 aa20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 FGFR3P22607 806 aa20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 PPM1AP35813 382 aa20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 BMPR1AP36894 532 aa20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 LHX1P48742 406 aa20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 SLC47A2Q86VL8 602 aa20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 UNC93AQ86WB7 457 aa20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 METTL23Q86XA0 190 aa20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 LRRC8AQ8IWT6 810 aa20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 SLC4A11Q8NBS3 891 aa20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 SPATA18Q8TC71 538 aa20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 CHP1Q99653 195 aa20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 RTP3Q9BQQ7 232 aa20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 NT5C1AQ9BXI3 368 aa20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 SPTBN5Q9NRC6 3674 aaKnown RBP20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 FGF18O76093 207 aa20.16■□□□□ 0.82
TNFRSF1A-213ENST00000540022 FECHP22830 423 aa20.16■□□□□ 0.82
TNFRSF1A-213ENST00000540022 PRKCIP41743 596 aa20.16■□□□□ 0.82
TNFRSF1A-213ENST00000540022 YWHAHQ04917 246 aaPredicted RBP20.16■□□□□ 0.82
TNFRSF1A-213ENST00000540022 RTP2Q5QGT7 225 aa20.16■□□□□ 0.82
TNFRSF1A-213ENST00000540022 OVOS1Q6IE37 1185 aa20.16■□□□□ 0.82
TNFRSF1A-213ENST00000540022 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.16■□□□□ 0.82
TNFRSF1A-213ENST00000540022 FMNL3Q8IVF7 1028 aa20.16■□□□□ 0.82
TNFRSF1A-213ENST00000540022 TMEM176AQ96HP8 235 aa20.16■□□□□ 0.82
TNFRSF1A-213ENST00000540022 DPEP3Q9H4B8 488 aa20.16■□□□□ 0.82
TNFRSF1A-213ENST00000540022 ZNHIT6Q9NWK9 470 aaKnown RBP20.16■□□□□ 0.82
TNFRSF1A-213ENST00000540022 ARHGAP20Q9P2F6 1191 aa20.16■□□□□ 0.82
TNFRSF1A-213ENST00000540022 SERPING1P05155 500 aa20.15■□□□□ 0.82
TNFRSF1A-213ENST00000540022 PLEKP08567 350 aaPredicted RBP20.15■□□□□ 0.82
TNFRSF1A-213ENST00000540022 PAEPP09466 180 aa20.15■□□□□ 0.82
TNFRSF1A-213ENST00000540022 CCDC172P0C7W6 258 aa20.15■□□□□ 0.82
TNFRSF1A-213ENST00000540022 CYP11B1P15538 503 aa20.15■□□□□ 0.82
TNFRSF1A-213ENST00000540022 ACAT1P24752 427 aaKnown RBP20.15■□□□□ 0.82
TNFRSF1A-213ENST00000540022 CTNNB1P35222 781 aa20.15■□□□□ 0.82
TNFRSF1A-213ENST00000540022 ERVK-21P61565 698 aa20.15■□□□□ 0.82
TNFRSF1A-213ENST00000540022 PTK2Q05397 1052 aa20.15■□□□□ 0.82
TNFRSF1A-213ENST00000540022 KLHL30Q0D2K2 578 aa20.15■□□□□ 0.82
TNFRSF1A-213ENST00000540022 VARS2Q5ST30 1063 aaKnown RBP20.15■□□□□ 0.82
TNFRSF1A-213ENST00000540022 KIAA0319Q5VV43 1072 aa20.15■□□□□ 0.82
TNFRSF1A-213ENST00000540022 DDX53Q86TM3 631 aaKnown RBP20.15■□□□□ 0.82
TNFRSF1A-213ENST00000540022 ACOT1Q86TX2 421 aa20.15■□□□□ 0.82
TNFRSF1A-213ENST00000540022 TMEM139Q8IV31 216 aa20.15■□□□□ 0.82
TNFRSF1A-213ENST00000540022 KLHL23Q8NBE8 558 aa20.15■□□□□ 0.82
TNFRSF1A-213ENST00000540022 EPS8L1Q8TE68 723 aa20.15■□□□□ 0.82
TNFRSF1A-213ENST00000540022 TGS1Q96RS0 853 aaKnown RBP20.15■□□□□ 0.82
TNFRSF1A-213ENST00000540022 LPIN3Q9BQK8 851 aa20.15■□□□□ 0.82
TNFRSF1A-213ENST00000540022 HAUS4Q9H6D7 363 aa20.15■□□□□ 0.82
TNFRSF1A-213ENST00000540022 CHST7Q9NS84 486 aa20.15■□□□□ 0.82
TNFRSF1A-213ENST00000540022 RFXAPO00287 272 aa20.14■□□□□ 0.81
TNFRSF1A-213ENST00000540022 OAZ2O95190 189 aa20.14■□□□□ 0.81
TNFRSF1A-213ENST00000540022 SOD2P04179 222 aa20.14■□□□□ 0.81
TNFRSF1A-213ENST00000540022 GNA15P30679 374 aa20.14■□□□□ 0.81
TNFRSF1A-213ENST00000540022 BPIFB4P59827 614 aa20.14■□□□□ 0.81
TNFRSF1A-213ENST00000540022 PLCB3Q01970 1234 aa20.14■□□□□ 0.81
TNFRSF1A-213ENST00000540022 MRPL58Q14197 206 aaKnown RBP20.14■□□□□ 0.81
TNFRSF1A-213ENST00000540022 USP41Q3LFD5 358 aa20.14■□□□□ 0.81
TNFRSF1A-213ENST00000540022 TDRD12Q587J7 1177 aaKnown RBP20.14■□□□□ 0.81
TNFRSF1A-213ENST00000540022 NOP9Q86U38 636 aaKnown RBP20.14■□□□□ 0.81
TNFRSF1A-213ENST00000540022 CRYBG2Q8N1P7 616 aa20.14■□□□□ 0.81
TNFRSF1A-213ENST00000540022 ARNTL2Q8WYA1 636 aa20.14■□□□□ 0.81
TNFRSF1A-213ENST00000540022 BAG1Q99933 345 aaPredicted RBP20.14■□□□□ 0.81
TNFRSF1A-213ENST00000540022 ZSWIM1Q9BR11 485 aa20.14■□□□□ 0.81
TNFRSF1A-213ENST00000540022 TTPALQ9BTX7 342 aa20.14■□□□□ 0.81
TNFRSF1A-213ENST00000540022 NOCTQ9UK39 431 aaKnown RBP20.14■□□□□ 0.81
TNFRSF1A-213ENST00000540022 RWDD3Q9Y3V2 267 aa20.14■□□□□ 0.81
TNFRSF1A-213ENST00000540022 KIAA1671Q9BY89 1806 aa20.13■□□□□ 0.81
TNFRSF1A-213ENST00000540022 ATP2C2O75185 946 aa20.13■□□□□ 0.81
TNFRSF1A-213ENST00000540022 PSMC1P62191 440 aaKnown RBP20.13■□□□□ 0.81
TNFRSF1A-213ENST00000540022 CDK17Q00537 523 aa20.13■□□□□ 0.81
TNFRSF1A-213ENST00000540022 KRT17Q04695 432 aa20.13■□□□□ 0.81
TNFRSF1A-213ENST00000540022 ZNF571Q7Z3V5 609 aaPredicted RBP20.13■□□□□ 0.81
TNFRSF1A-213ENST00000540022 OR10T2Q8NGX3 314 aa20.13■□□□□ 0.81
TNFRSF1A-213ENST00000540022 SLC20A1Q8WUM9 679 aa20.13■□□□□ 0.81
TNFRSF1A-213ENST00000540022 TFAP2BQ92481 460 aa20.13■□□□□ 0.81
TNFRSF1A-213ENST00000540022 DDX1Q92499 740 aaKnown RBP20.13■□□□□ 0.81
TNFRSF1A-213ENST00000540022 HEXIM2Q96MH2 286 aaKnown RBP20.13■□□□□ 0.81
TNFRSF1A-213ENST00000540022 SYT15Q9BQS2 421 aa20.13■□□□□ 0.81
TNFRSF1A-213ENST00000540022 SYT11Q9BT88 431 aa20.13■□□□□ 0.81
TNFRSF1A-213ENST00000540022 HERC2P3Q9BVR0 1158 aa20.13■□□□□ 0.81
TNFRSF1A-213ENST00000540022 PUF60Q9UHX1 559 aaKnown RBP20.13■□□□□ 0.81
TNFRSF1A-213ENST00000540022 CD19P15391 556 aa20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 IGFBP4P22692 258 aa20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 BRD2P25440 801 aaKnown RBP20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms