RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 PLK4O00444 970 aa10.02□□□□□ -0.81
USP28-205ENST00000537706 NDUFS2O75306 463 aa10.02□□□□□ -0.81
USP28-205ENST00000537706 KLF8O95600 359 aaPredicted RBP10.02□□□□□ -0.81
USP28-205ENST00000537706 ARL2P36404 184 aa10.02□□□□□ -0.81
USP28-205ENST00000537706 TUFMP49411 452 aaKnown RBP10.02□□□□□ -0.81
USP28-205ENST00000537706 PPP2R5CQ13362 524 aa10.02□□□□□ -0.81
USP28-205ENST00000537706 EPHA7Q15375 998 aa10.02□□□□□ -0.81
USP28-205ENST00000537706 SMAD1Q15797 465 aaKnown RBP10.02□□□□□ -0.81
USP28-205ENST00000537706 SNIP1Q8TAD8 396 aaKnown RBP10.02□□□□□ -0.81
USP28-205ENST00000537706 SPATA18Q8TC71 538 aa10.02□□□□□ -0.81
USP28-205ENST00000537706 OSCP1Q8WVF1 389 aa10.02□□□□□ -0.81
USP28-205ENST00000537706 FOXJ1Q92949 421 aa10.02□□□□□ -0.81
USP28-205ENST00000537706 CCDC94Q9BW85 323 aaPredicted RBP10.02□□□□□ -0.81
USP28-205ENST00000537706 SLC46A2Q9BY10 475 aa10.02□□□□□ -0.81
USP28-205ENST00000537706 FAM117AQ9C073 453 aa10.02□□□□□ -0.81
USP28-205ENST00000537706 POLR3FQ9H1D9 316 aaPredicted RBP10.02□□□□□ -0.81
USP28-205ENST00000537706 PCDHGB2Q9Y5G2 931 aa10.02□□□□□ -0.81
USP28-205ENST00000537706 PLXNB3Q9ULL4 1909 aa10.02□□□□□ -0.81
USP28-205ENST00000537706 APC2O95996 2303 aa10.02□□□□□ -0.81
USP28-205ENST00000537706 CCDC196A0A1B0GTZ2 297 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 TCRBV21S2A2A0A5A6 115 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 TNFSF14O43557 240 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 ZNF217O75362 1048 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 DKK1O94907 266 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 NFATC1O95644 943 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 JUPP14923 745 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 GLRA2P23416 452 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 ACTN2P35609 894 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 MATKP42679 507 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 PTH1RQ03431 593 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 GRIK2Q13002 908 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 GPR17Q13304 367 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 ZNF268Q14587 947 aaPredicted RBP10.01□□□□□ -0.81
USP28-205ENST00000537706 MTF1Q14872 753 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 INAVAQ3KP66 663 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 CCDC157Q569K6 752 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 ARMCX5Q6P1M9 558 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 APOA5Q6Q788 366 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 TRMT11Q7Z4G4 463 aaKnown RBP10.01□□□□□ -0.81
USP28-205ENST00000537706 MARCH9Q86YJ5 346 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 FMNL3Q8IVF7 1028 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 TRIML1Q8N9V2 468 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 TBCKQ8TEA7 893 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 MRPS31Q92665 395 aaKnown RBP10.01□□□□□ -0.81
USP28-205ENST00000537706 HSPA12BQ96MM6 686 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 XPNPEP1Q9NQW7 623 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 TM7SF3Q9NS93 570 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 HSFX1Q9UBD0 423 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 CACNA1EQ15878 2313 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 SMIM28A0A1B0GU29 152 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 MYMKA6NI61 221 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 CDK4P11802 303 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 GP1BBP13224 206 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 IGFBP6P24592 240 aaPredicted RBP10.01□□□□□ -0.81
USP28-205ENST00000537706 FUT2Q10981 343 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 PKDCCQ504Y2 493 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 MOXD1Q6UVY6 613 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 PCSK4Q6UW60 755 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 TMEM92Q6UXU6 159 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 ZNF574Q6ZN55 896 aaPredicted RBP10.01□□□□□ -0.81
USP28-205ENST00000537706 FRMD1Q8N878 549 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 MAB21L3Q8N8X9 362 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 TXNDC5Q8NBS9 432 aaKnown RBP10.01□□□□□ -0.81
USP28-205ENST00000537706 SPIRE2Q8WWL2 714 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 EZH1Q92800 747 aaPredicted RBP10.01□□□□□ -0.81
USP28-205ENST00000537706 FGF11Q92914 225 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 USP13Q92995 863 aaPredicted RBP10.01□□□□□ -0.81
USP28-205ENST00000537706 MED8Q96G25 268 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 FZD8Q9H461 694 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 ANKMY1Q9P2S6 941 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 DDX25Q9UHL0 483 aaKnown RBP10.01□□□□□ -0.81
USP28-205ENST00000537706 SLC27A5Q9Y2P5 690 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 TAF6LQ9Y6J9 622 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 ABCA7Q8IZY2 2146 aa10.01□□□□□ -0.81
USP28-205ENST00000537706 CYP3A7-CYP3A51PA0A087WV96 503 aa10□□□□□ -0.81
USP28-205ENST00000537706 A0A1B0GTW7 788 aa10□□□□□ -0.81
USP28-205ENST00000537706 EML1O00423 815 aa10□□□□□ -0.81
USP28-205ENST00000537706 TLX3O43711 291 aaPredicted RBP10□□□□□ -0.81
USP28-205ENST00000537706 LIG1P18858 919 aa10□□□□□ -0.81
USP28-205ENST00000537706 CYP3A7P24462 503 aa10□□□□□ -0.81
USP28-205ENST00000537706 ADSSP30520 456 aa10□□□□□ -0.81
USP28-205ENST00000537706 TMPRSS3P57727 454 aa10□□□□□ -0.81
USP28-205ENST00000537706 MYBPC2Q14324 1141 aa10□□□□□ -0.81
USP28-205ENST00000537706 NAIF1Q69YI7 327 aaPredicted RBP10□□□□□ -0.81
USP28-205ENST00000537706 CENPPQ6IPU0 288 aa10□□□□□ -0.81
USP28-205ENST00000537706 ALLCQ8N6M5 410 aa10□□□□□ -0.81
USP28-205ENST00000537706 TTC16Q8NEE8 873 aa10□□□□□ -0.81
USP28-205ENST00000537706 ETNPPLQ8TBG4 499 aa10□□□□□ -0.81
USP28-205ENST00000537706 TMEM176AQ96HP8 235 aa10□□□□□ -0.81
USP28-205ENST00000537706 FAM20AQ96MK3 541 aa10□□□□□ -0.81
USP28-205ENST00000537706 NACC1Q96RE7 527 aa10□□□□□ -0.81
USP28-205ENST00000537706 SEPT5Q99719 369 aaPredicted RBP10□□□□□ -0.81
USP28-205ENST00000537706 GAREM1Q9H706 876 aa10□□□□□ -0.81
USP28-205ENST00000537706 K7EQS6 105 aa9.99□□□□□ -0.81
USP28-205ENST00000537706 APODP05090 189 aa9.99□□□□□ -0.81
USP28-205ENST00000537706 TIE1P35590 1138 aa9.99□□□□□ -0.81
USP28-205ENST00000537706 CCDC173Q0VFZ6 552 aa9.99□□□□□ -0.81
USP28-205ENST00000537706 SCRN1Q12765 414 aa9.99□□□□□ -0.81
USP28-205ENST00000537706 TPH2Q8IWU9 490 aa9.99□□□□□ -0.81
USP28-205ENST00000537706 BAHD1Q8TBE0 780 aaPredicted RBP9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms