RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 ENC1O14682 589 aa8.88□□□□□ -0.99
NEDD8-207ENST00000533242 LRP3O75074 770 aa8.88□□□□□ -0.99
NEDD8-207ENST00000533242 PLEKP08567 350 aaPredicted RBP8.88□□□□□ -0.99
NEDD8-207ENST00000533242 TDGF1P13385 188 aa8.88□□□□□ -0.99
NEDD8-207ENST00000533242 FGFR3P22607 806 aa8.88□□□□□ -0.99
NEDD8-207ENST00000533242 FXR2P51116 673 aaKnown RBP eCLIP8.88□□□□□ -0.99
NEDD8-207ENST00000533242 ADCY1Q08828 1119 aa8.88□□□□□ -0.99
NEDD8-207ENST00000533242 SPIRE1Q08AE8 756 aa8.88□□□□□ -0.99
NEDD8-207ENST00000533242 LAIR1Q6GTX8 287 aa8.88□□□□□ -0.99
NEDD8-207ENST00000533242 TSSK4Q6SA08 328 aa8.88□□□□□ -0.99
NEDD8-207ENST00000533242 TPH2Q8IWU9 490 aa8.88□□□□□ -0.99
NEDD8-207ENST00000533242 SLFN12Q8IYM2 578 aa8.88□□□□□ -0.99
NEDD8-207ENST00000533242 ANKRD20A12PQ8NF67 263 aa8.88□□□□□ -0.99
NEDD8-207ENST00000533242 OR8K1Q8NGG5 319 aa8.88□□□□□ -0.99
NEDD8-207ENST00000533242 HASPINQ8TF76 798 aa8.88□□□□□ -0.99
NEDD8-207ENST00000533242 ELSPBP1Q96BH3 223 aa8.88□□□□□ -0.99
NEDD8-207ENST00000533242 PLA2G2FQ9BZM2 168 aa8.88□□□□□ -0.99
NEDD8-207ENST00000533242 CHRDQ9H2X0 955 aa8.88□□□□□ -0.99
NEDD8-207ENST00000533242 CUEDC2Q9H467 287 aa8.88□□□□□ -0.99
NEDD8-207ENST00000533242 MTRRQ9UBK8 725 aa8.88□□□□□ -0.99
NEDD8-207ENST00000533242 CDC23Q9UJX2 597 aa8.88□□□□□ -0.99
NEDD8-207ENST00000533242 RAB23Q9ULC3 237 aa8.88□□□□□ -0.99
NEDD8-207ENST00000533242 GUCA1BQ9UMX6 200 aa8.88□□□□□ -0.99
NEDD8-207ENST00000533242 LUC7L2Q9Y383 392 aaKnown RBP8.88□□□□□ -0.99
NEDD8-207ENST00000533242 MRPS23Q9Y3D9 190 aaKnown RBP8.88□□□□□ -0.99
NEDD8-207ENST00000533242 RALGAPA1Q6GYQ0 2036 aa8.88□□□□□ -0.99
NEDD8-207ENST00000533242 CACNA1BQ00975 2339 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 PTGESO14684 152 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 SLC30A4O14863 429 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 ZNF263O14978 683 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 SLITRK3O94933 977 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 THP07101 528 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 TPM1P09493 284 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 AMPD2Q01433 879 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 CYP4A11Q02928 519 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 MTAPQ13126 283 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 TRIM14Q14142 442 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 PPP2R5DQ14738 602 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 FAM187BQ17R55 369 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 CENPPQ6IPU0 288 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 CDR2LQ86X02 465 aaPredicted RBP8.87□□□□□ -0.99
NEDD8-207ENST00000533242 ZNF687Q8N1G0 1237 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 CELF5Q8N6W0 485 aaKnown RBP8.87□□□□□ -0.99
NEDD8-207ENST00000533242 NOA1Q8NC60 698 aaKnown RBP8.87□□□□□ -0.99
NEDD8-207ENST00000533242 NETO1Q8TDF5 533 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 SNX29Q8TEQ0 813 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 ING5Q8WYH8 240 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 LARP4BQ92615 738 aaKnown RBP8.87□□□□□ -0.99
NEDD8-207ENST00000533242 POLR3FQ9H1D9 316 aaPredicted RBP8.87□□□□□ -0.99
NEDD8-207ENST00000533242 PRMT7Q9NVM4 692 aaPredicted RBP8.87□□□□□ -0.99
NEDD8-207ENST00000533242 BACE2Q9Y5Z0 518 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 DCHS1Q96JQ0 3298 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 SHISA7A6NL88 538 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 TMEM189-UBE2V1I3L0A0 370 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 OR1D2P34982 312 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 CYP27A1Q02318 531 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 EHHADHQ08426 723 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 STIM1Q13586 685 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 TERF2Q15554 542 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 NAB2Q15742 525 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 MEA1Q16626 185 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 TMCO3Q6UWJ1 677 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 DDX12PQ92771 950 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 MCRS1Q96EZ8 462 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 EIF2AK1Q9BQI3 630 aaKnown RBP8.87□□□□□ -0.99
NEDD8-207ENST00000533242 MAGEF1Q9HAY2 307 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 HEBP1Q9NRV9 189 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 MYO15AQ9UKN7 3530 aa8.87□□□□□ -0.99
NEDD8-207ENST00000533242 ARHGEF37A1IGU5 675 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 CTAGE9A4FU28 777 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 SRGAP2O75044 1071 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 RHOP08100 348 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 IDEP14735 1019 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 PTPN2P17706 415 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 TRIM21P19474 475 aaKnown RBP8.86□□□□□ -0.99
NEDD8-207ENST00000533242 MTIF2P46199 727 aaKnown RBP8.86□□□□□ -0.99
NEDD8-207ENST00000533242 CACNB1Q02641 598 aaPredicted RBP8.86□□□□□ -0.99
NEDD8-207ENST00000533242 TMEM119Q4V9L6 283 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 CDCA2Q69YH5 1023 aaPredicted RBP8.86□□□□□ -0.99
NEDD8-207ENST00000533242 TANGO2Q6ICL3 276 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 SV2BQ7L1I2 683 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 RAD54LQ92698 747 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 GOLGA1Q92805 767 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 DNAJC19Q96DA6 116 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 CALML4Q96GE6 196 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 CCDC43Q96MW1 224 aaKnown RBP8.86□□□□□ -0.99
NEDD8-207ENST00000533242 HSD17B14Q9BPX1 270 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 FZD8Q9H461 694 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 PDZD7Q9H5P4 517 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 MAGEC2Q9UBF1 373 aaPredicted RBP8.86□□□□□ -0.99
NEDD8-207ENST00000533242 NPHP3-ACAD11A0A0J9YXS1 232 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 RECQL4O94761 1208 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 MICAL2O94851 1124 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 ATP1A1P05023 1023 aaKnown RBP8.86□□□□□ -0.99
NEDD8-207ENST00000533242 RETP07949 1114 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 CEBPBP17676 345 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 FCARP24071 287 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 RARRES1P49788 294 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 CCR3P51677 355 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 SPEM2Q0P670 501 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms