RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 TTC31Q49AM3 519 aaPredicted RBP15.69■□□□□ 0.1
NUP54-217ENST00000514987 HIBCHQ6NVY1 386 aaPredicted RBP15.69■□□□□ 0.1
NUP54-217ENST00000514987 RIBC1Q8N443 379 aaPredicted RBP15.69■□□□□ 0.1
NUP54-217ENST00000514987 ZCCHC9Q8N567 271 aaKnown RBP15.69■□□□□ 0.1
NUP54-217ENST00000514987 WDTC1Q8N5D0 677 aa15.69■□□□□ 0.1
NUP54-217ENST00000514987 TTC13Q8NBP0 860 aa15.69■□□□□ 0.1
NUP54-217ENST00000514987 NKD2Q969F2 451 aaPredicted RBP15.69■□□□□ 0.1
NUP54-217ENST00000514987 CABS1Q96KC9 395 aa15.69■□□□□ 0.1
NUP54-217ENST00000514987 TTC25Q96NG3 672 aa15.69■□□□□ 0.1
NUP54-217ENST00000514987 NSRP1Q9H0G5 558 aaKnown RBP15.69■□□□□ 0.1
NUP54-217ENST00000514987 ADAM7Q9H2U9 754 aa15.69■□□□□ 0.1
NUP54-217ENST00000514987 DDX20Q9UHI6 824 aaKnown RBP15.69■□□□□ 0.1
NUP54-217ENST00000514987 IVNS1ABPQ9Y6Y0 642 aa15.69■□□□□ 0.1
NUP54-217ENST00000514987 O00370 1275 aa15.68■□□□□ 0.1
NUP54-217ENST00000514987 FSBPO95073 299 aa15.68■□□□□ 0.1
NUP54-217ENST00000514987 GH1P01241 217 aa15.68■□□□□ 0.1
NUP54-217ENST00000514987 CD19P15391 556 aa15.68■□□□□ 0.1
NUP54-217ENST00000514987 CHKAP35790 457 aa15.68■□□□□ 0.1
NUP54-217ENST00000514987 ZNF252P-AS1Q0IIN9 211 aa15.68■□□□□ 0.1
NUP54-217ENST00000514987 ZNF268Q14587 947 aaPredicted RBP15.68■□□□□ 0.1
NUP54-217ENST00000514987 EEF1DP3Q658K8 133 aa15.68■□□□□ 0.1
NUP54-217ENST00000514987 NT5DC4Q86YG4 428 aa15.68■□□□□ 0.1
NUP54-217ENST00000514987 ATXN2LQ8WWM7 1075 aaKnown RBP15.68■□□□□ 0.1
NUP54-217ENST00000514987 TFAP2BQ92481 460 aa15.68■□□□□ 0.1
NUP54-217ENST00000514987 OPTNQ96CV9 577 aa15.68■□□□□ 0.1
NUP54-217ENST00000514987 SEC16BQ96JE7 1060 aa15.68■□□□□ 0.1
NUP54-217ENST00000514987 MIS12Q9H081 205 aa15.68■□□□□ 0.1
NUP54-217ENST00000514987 ACTR5Q9H9F9 607 aaPredicted RBP15.68■□□□□ 0.1
NUP54-217ENST00000514987 VTA1Q9NP79 307 aa15.68■□□□□ 0.1
NUP54-217ENST00000514987 NINJ2Q9NZG7 142 aa15.68■□□□□ 0.1
NUP54-217ENST00000514987 LGALS13Q9UHV8 139 aa15.68■□□□□ 0.1
NUP54-217ENST00000514987 ZNF148Q9UQR1 794 aa15.68■□□□□ 0.1
NUP54-217ENST00000514987 hCG_1818297A0A087WSY0 165 aa15.67■□□□□ 0.1
NUP54-217ENST00000514987 F8VP50 259 aa15.67■□□□□ 0.1
NUP54-217ENST00000514987 DNALI1O14645 258 aaPredicted RBP15.67■□□□□ 0.1
NUP54-217ENST00000514987 ACSL3O95573 720 aa15.67■□□□□ 0.1
NUP54-217ENST00000514987 ITGAVP06756 1048 aa15.67■□□□□ 0.1
NUP54-217ENST00000514987 KRT3P12035 628 aa15.67■□□□□ 0.1
NUP54-217ENST00000514987 ATF7P17544 494 aaPredicted RBP15.67■□□□□ 0.1
NUP54-217ENST00000514987 VCPP55072 806 aaKnown RBP15.67■□□□□ 0.1
NUP54-217ENST00000514987 ARHGAP1Q07960 439 aa15.67■□□□□ 0.1
NUP54-217ENST00000514987 SNAPC2Q13487 334 aa15.67■□□□□ 0.1
NUP54-217ENST00000514987 TRIP13Q15645 432 aaPredicted RBP15.67■□□□□ 0.1
NUP54-217ENST00000514987 ZNF394Q53GI3 561 aa15.67■□□□□ 0.1
NUP54-217ENST00000514987 WDR78Q5VTH9 848 aa15.67■□□□□ 0.1
NUP54-217ENST00000514987 DAB2IPQ5VWQ8 1189 aa15.67■□□□□ 0.1
NUP54-217ENST00000514987 DENND1BQ6P3S1 775 aa15.67■□□□□ 0.1
NUP54-217ENST00000514987 MFSD7Q6UXD7 560 aa15.67■□□□□ 0.1
NUP54-217ENST00000514987 DLK2Q6UY11 383 aa15.67■□□□□ 0.1
NUP54-217ENST00000514987 SCARA5Q6ZMJ2 495 aa15.67■□□□□ 0.1
NUP54-217ENST00000514987 CCDC121Q6ZUS5 278 aa15.67■□□□□ 0.1
NUP54-217ENST00000514987 PCGF5Q86SE9 256 aa15.67■□□□□ 0.1
NUP54-217ENST00000514987 MICALL1Q8N3F8 863 aa15.67■□□□□ 0.1
NUP54-217ENST00000514987 ALLCQ8N6M5 410 aa15.67■□□□□ 0.1
NUP54-217ENST00000514987 UHMK1Q8TAS1 419 aaKnown RBP15.67■□□□□ 0.1
NUP54-217ENST00000514987 MDM1Q8TC05 714 aa15.67■□□□□ 0.1
NUP54-217ENST00000514987 EMID1Q96A84 441 aaPredicted RBP15.67■□□□□ 0.1
NUP54-217ENST00000514987 CFAP57Q96MR6 1250 aa15.67■□□□□ 0.1
NUP54-217ENST00000514987 ZNF317Q96PQ6 595 aaPredicted RBP15.67■□□□□ 0.1
NUP54-217ENST00000514987 DDX23Q9BUQ8 820 aaKnown RBP15.67■□□□□ 0.1
NUP54-217ENST00000514987 PPCSQ9HAB8 311 aa15.67■□□□□ 0.1
NUP54-217ENST00000514987 RNF181Q9P0P0 153 aa15.67■□□□□ 0.1
NUP54-217ENST00000514987 NXF1Q9UBU9 619 aaKnown RBP15.67■□□□□ 0.1
NUP54-217ENST00000514987 KIAA1257Q9ULG3 409 aa15.67■□□□□ 0.1
NUP54-217ENST00000514987 ACTL7BQ9Y614 415 aa15.67■□□□□ 0.1
NUP54-217ENST00000514987 UNCXA6NJT0 531 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 ANKRD65E5RJM6 399 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 B4GALT5O43286 388 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 CDH16O75309 829 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 GJB6O95452 261 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 STAU1O95793 577 aaKnown RBP15.66■□□□□ 0.1
NUP54-217ENST00000514987 KRT19P08727 400 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 STAG3L1P0CL83 205 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 CXCL8P10145 99 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 PSMA2P25787 234 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 CDKN2BP42772 138 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 SLCO1A2P46721 670 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 CLCN3P51790 818 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 RAD23BP54727 409 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 IFT88Q13099 833 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 NR1H3Q13133 447 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 MORF4L2Q15014 288 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 CNGA2Q16280 664 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 KYNUQ16719 465 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 P3H1Q32P28 736 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 RNF187Q5TA31 235 aaPredicted RBP15.66■□□□□ 0.1
NUP54-217ENST00000514987 TAX1BP1Q86VP1 789 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 ANKS4BQ8N8V4 417 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 TRAPPC12Q8WVT3 735 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 ARHGEF2Q92974 986 aaKnown RBP15.66■□□□□ 0.1
NUP54-217ENST00000514987 TPX2Q9ULW0 747 aaKnown RBP15.66■□□□□ 0.1
NUP54-217ENST00000514987 GOLGA6L7A0A1B0GV03 622 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 RBM47A0AV96 593 aaKnown RBP15.66■□□□□ 0.1
NUP54-217ENST00000514987 LRRD1A4D1F6 860 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 LACTBL1A8MY62 500 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 PI4K2BG5E9Z4 385 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 HMGCRP04035 888 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 VDRP11473 427 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 INSRRP14616 1297 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 VPS41P49754 854 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms