RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 RAMP2O60895 175 aa4.74□□□□□ -1.65
NUP54-212ENST00000513248 SLC43A1O75387 559 aa4.74□□□□□ -1.65
NUP54-212ENST00000513248 OFD1O75665 1012 aa4.74□□□□□ -1.65
NUP54-212ENST00000513248 HSPA6P17066 643 aa4.74□□□□□ -1.65
NUP54-212ENST00000513248 ATP5JP18859 108 aa4.74□□□□□ -1.65
NUP54-212ENST00000513248 NR4A1P22736 598 aa4.74□□□□□ -1.65
NUP54-212ENST00000513248 MGAT1P26572 445 aa4.74□□□□□ -1.65
NUP54-212ENST00000513248 AGFG1P52594 562 aaKnown RBP4.74□□□□□ -1.65
NUP54-212ENST00000513248 NHLH2Q02577 135 aa4.74□□□□□ -1.65
NUP54-212ENST00000513248 NOGQ13253 232 aa4.74□□□□□ -1.65
NUP54-212ENST00000513248 MLC1Q15049 377 aa4.74□□□□□ -1.65
NUP54-212ENST00000513248 FLYWCH1Q4VC44 716 aa4.74□□□□□ -1.65
NUP54-212ENST00000513248 KHDC1Q4VXA5 237 aaKnown RBP4.74□□□□□ -1.65
NUP54-212ENST00000513248 IFIT1BQ5T764 474 aaKnown RBP4.74□□□□□ -1.65
NUP54-212ENST00000513248 ZNF627Q7L945 461 aa4.74□□□□□ -1.65
NUP54-212ENST00000513248 FMNL3Q8IVF7 1028 aa4.74□□□□□ -1.65
NUP54-212ENST00000513248 MYO1HQ8N1T3 1032 aa4.74□□□□□ -1.65
NUP54-212ENST00000513248 SYNE4Q8N205 404 aa4.74□□□□□ -1.65
NUP54-212ENST00000513248 C3orf20Q8ND61 904 aa4.74□□□□□ -1.65
NUP54-212ENST00000513248 PLBD2Q8NHP8 589 aa4.74□□□□□ -1.65
NUP54-212ENST00000513248 ZFP28Q8NHY6 868 aa4.74□□□□□ -1.65
NUP54-212ENST00000513248 LENG9Q96B70 501 aa4.74□□□□□ -1.65
NUP54-212ENST00000513248 DCLRE1CQ96SD1 692 aaKnown RBP4.74□□□□□ -1.65
NUP54-212ENST00000513248 ACO2Q99798 780 aaKnown RBP4.74□□□□□ -1.65
NUP54-212ENST00000513248 SLC46A2Q9BY10 475 aa4.74□□□□□ -1.65
NUP54-212ENST00000513248 C11orf54Q9H0W9 315 aaPredicted RBP4.74□□□□□ -1.65
NUP54-212ENST00000513248 WDR26Q9H7D7 661 aa4.74□□□□□ -1.65
NUP54-212ENST00000513248 SIDT1Q9NXL6 827 aaKnown RBP4.74□□□□□ -1.65
NUP54-212ENST00000513248 TRPM5Q9NZQ8 1165 aa4.74□□□□□ -1.65
NUP54-212ENST00000513248 DKK2Q9UBU2 259 aa4.74□□□□□ -1.65
NUP54-212ENST00000513248 NOB1Q9ULX3 412 aaKnown RBP4.74□□□□□ -1.65
NUP54-212ENST00000513248 POLHQ9Y253 713 aa4.74□□□□□ -1.65
NUP54-212ENST00000513248 PCSK5Q92824 1860 aa4.74□□□□□ -1.65
NUP54-212ENST00000513248 RGS12O14924 1447 aa4.73□□□□□ -1.65
NUP54-212ENST00000513248 PPIP5K1Q6PFW1 1433 aa4.73□□□□□ -1.65
NUP54-212ENST00000513248 A0A088AWK7 358 aa4.73□□□□□ -1.65
NUP54-212ENST00000513248 MARCH11A6NNE9 402 aa4.73□□□□□ -1.65
NUP54-212ENST00000513248 F2RL2O00254 374 aa4.73□□□□□ -1.65
NUP54-212ENST00000513248 DTNBO60941 627 aa4.73□□□□□ -1.65
NUP54-212ENST00000513248 TUSC2O75896 110 aa4.73□□□□□ -1.65
NUP54-212ENST00000513248 PRSS23O95084 383 aa4.73□□□□□ -1.65
NUP54-212ENST00000513248 RPLP2P05387 115 aaKnown RBP4.73□□□□□ -1.65
NUP54-212ENST00000513248 FTH1P19P0C7X4 201 aa4.73□□□□□ -1.65
NUP54-212ENST00000513248 RAP2AP10114 183 aa4.73□□□□□ -1.65
NUP54-212ENST00000513248 FBLP22087 321 aaKnown RBP4.73□□□□□ -1.65
NUP54-212ENST00000513248 ZFP36P26651 326 aaKnown RBP4.73□□□□□ -1.65
NUP54-212ENST00000513248 IL12RB1P42701 662 aa4.73□□□□□ -1.65
NUP54-212ENST00000513248 RNASE9P60153 205 aaKnown RBP4.73□□□□□ -1.65
NUP54-212ENST00000513248 RAP2BP61225 183 aa4.73□□□□□ -1.65
NUP54-212ENST00000513248 GALEQ14376 348 aa4.73□□□□□ -1.65
NUP54-212ENST00000513248 GBX1Q14549 363 aa4.73□□□□□ -1.65
NUP54-212ENST00000513248 PABPC1LQ4VXU2 614 aaKnown RBP4.73□□□□□ -1.65
NUP54-212ENST00000513248 ATXN7L2Q5T6C5 722 aaPredicted RBP4.73□□□□□ -1.65
NUP54-212ENST00000513248 AGAP9Q5VTM2 703 aa4.73□□□□□ -1.65
NUP54-212ENST00000513248 DPY19L2P1Q6NXN4 242 aa4.73□□□□□ -1.65
NUP54-212ENST00000513248 Q6ZPA2 131 aa4.73□□□□□ -1.65
NUP54-212ENST00000513248 LRRC55Q6ZSA7 311 aa4.73□□□□□ -1.65
NUP54-212ENST00000513248 CHST15Q7LFX5 561 aaPredicted RBP4.73□□□□□ -1.65
NUP54-212ENST00000513248 OVCH2Q7RTZ1 564 aa4.73□□□□□ -1.65
NUP54-212ENST00000513248 GDF7Q7Z4P5 450 aa4.73□□□□□ -1.65
NUP54-212ENST00000513248 HAS1Q92839 578 aa4.73□□□□□ -1.65
NUP54-212ENST00000513248 VOPP1Q96AW1 172 aa4.73□□□□□ -1.65
NUP54-212ENST00000513248 RGMAQ96B86 450 aa4.73□□□□□ -1.65
NUP54-212ENST00000513248 C8orf48Q96LL4 319 aa4.73□□□□□ -1.65
NUP54-212ENST00000513248 MAP3K14Q99558 947 aa4.73□□□□□ -1.65
NUP54-212ENST00000513248 VRK1Q99986 396 aaPredicted RBP4.73□□□□□ -1.65
NUP54-212ENST00000513248 POLR3GLQ9BT43 218 aa4.73□□□□□ -1.65
NUP54-212ENST00000513248 ZNF768Q9H5H4 540 aaKnown RBP4.73□□□□□ -1.65
NUP54-212ENST00000513248 CDK12Q9NYV4 1490 aaPredicted RBP4.73□□□□□ -1.65
NUP54-212ENST00000513248 ADGRB2O60241 1585 aa4.73□□□□□ -1.65
NUP54-212ENST00000513248 ATRNO75882 1429 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 TMEM191CA6NGB0 347 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 A6NNZ2 444 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 DIRC3C9JPN6 131 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 ERC2O15083 957 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 GRM6O15303 877 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 FOXN1O15353 648 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 B3GALT2O43825 422 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 PPFIA4O75335 1185 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 ARIH2O95376 493 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 POMCP01189 267 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 HRGP04196 525 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 CT47B1P0C2W7 299 aaPredicted RBP4.72□□□□□ -1.65
NUP54-212ENST00000513248 TYRP14679 529 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 KRT4P19013 534 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 GCSHP23434 173 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 PRDX5P30044 214 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 FAM189BP81408 668 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 COL10A1Q03692 680 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 TCF15Q12870 199 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 MINDY4Q4G0A6 757 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 THEMIS2Q5TEJ8 643 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 ZNF529Q6P280 563 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 RHOUQ7L0Q8 258 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 KRT27Q7Z3Y8 459 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 MRGPREQ86SM8 312 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 C14orf80Q86SX3 495 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.72□□□□□ -1.65
NUP54-212ENST00000513248 RHOT2Q8IXI1 618 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 KIAA0319LQ8IZA0 1049 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms