RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-208ENST00000494728 OSBPL6Q9BZF3 934 aa12.56□□□□□ -0.4
VTI1A-208ENST00000494728 TRIM9Q9C026 710 aa12.56□□□□□ -0.4
VTI1A-208ENST00000494728 SMG9Q9H0W8 520 aaKnown RBP12.56□□□□□ -0.4
VTI1A-208ENST00000494728 KBTBD4Q9NVX7 518 aa12.56□□□□□ -0.4
VTI1A-208ENST00000494728 SPATA6Q9NWH7 488 aaPredicted RBP12.56□□□□□ -0.4
VTI1A-208ENST00000494728 ABI2Q9NYB9 513 aaPredicted RBP12.56□□□□□ -0.4
VTI1A-208ENST00000494728 NDRG2Q9UN36 371 aaKnown RBP12.56□□□□□ -0.4
VTI1A-208ENST00000494728 SPAG17Q6Q759 2223 aa12.56□□□□□ -0.4
VTI1A-208ENST00000494728 TULP1O00294 542 aaPredicted RBP12.55□□□□□ -0.4
VTI1A-208ENST00000494728 EXTL3O43909 919 aa12.55□□□□□ -0.4
VTI1A-208ENST00000494728 PPP6R2O75170 966 aa12.55□□□□□ -0.4
VTI1A-208ENST00000494728 GARTP22102 1010 aa12.55□□□□□ -0.4
VTI1A-208ENST00000494728 ACAT1P24752 427 aaKnown RBP12.55□□□□□ -0.4
VTI1A-208ENST00000494728 POU5F1Q01860 360 aaKnown RBP12.55□□□□□ -0.4
VTI1A-208ENST00000494728 MTAPQ13126 283 aa12.55□□□□□ -0.4
VTI1A-208ENST00000494728 POSTNQ15063 836 aa12.55□□□□□ -0.4
VTI1A-208ENST00000494728 MGAT5BQ3V5L5 792 aa12.55□□□□□ -0.4
VTI1A-208ENST00000494728 SV2CQ496J9 727 aa12.55□□□□□ -0.4
VTI1A-208ENST00000494728 SDHAF4Q5VUM1 108 aa12.55□□□□□ -0.4
VTI1A-208ENST00000494728 ARMCX5Q6P1M9 558 aa12.55□□□□□ -0.4
VTI1A-208ENST00000494728 EPM2AIP1Q7L775 607 aaPredicted RBP12.55□□□□□ -0.4
VTI1A-208ENST00000494728 NT5DC4Q86YG4 428 aa12.55□□□□□ -0.4
VTI1A-208ENST00000494728 CBWD2Q8IUF1 395 aa12.55□□□□□ -0.4
VTI1A-208ENST00000494728 ARID3BQ8IVW6 561 aaPredicted RBP12.55□□□□□ -0.4
VTI1A-208ENST00000494728 MFSD6LQ8IWD5 586 aa12.55□□□□□ -0.4
VTI1A-208ENST00000494728 SYCP3Q8IZU3 236 aa12.55□□□□□ -0.4
VTI1A-208ENST00000494728 RIN3Q8TB24 985 aa12.55□□□□□ -0.4
VTI1A-208ENST00000494728 SNX21Q969T3 373 aa12.55□□□□□ -0.4
VTI1A-208ENST00000494728 CHAMP1Q96JM3 812 aa12.55□□□□□ -0.4
VTI1A-208ENST00000494728 ZNF560Q96MR9 790 aa12.55□□□□□ -0.4
VTI1A-208ENST00000494728 PKMYT1Q99640 499 aa12.55□□□□□ -0.4
VTI1A-208ENST00000494728 BCO2Q9BYV7 579 aa12.55□□□□□ -0.4
VTI1A-208ENST00000494728 TNMDQ9H2S6 317 aa12.55□□□□□ -0.4
VTI1A-208ENST00000494728 ATXN3LQ9H3M9 355 aa12.55□□□□□ -0.4
VTI1A-208ENST00000494728 AGAP1Q9UPQ3 857 aa12.55□□□□□ -0.4
VTI1A-208ENST00000494728 EXOC7Q9UPT5 735 aa12.55□□□□□ -0.4
VTI1A-208ENST00000494728 PCDHB13Q9Y5F0 798 aa12.55□□□□□ -0.4
VTI1A-208ENST00000494728 PIAS3Q9Y6X2 628 aa12.55□□□□□ -0.4
VTI1A-208ENST00000494728 SLC38A8A6NNN8 435 aa12.54□□□□□ -0.4
VTI1A-208ENST00000494728 TADA3O75528 432 aa12.54□□□□□ -0.4
VTI1A-208ENST00000494728 YEATS4O95619 227 aa12.54□□□□□ -0.4
VTI1A-208ENST00000494728 HAPLN1P10915 354 aaPredicted RBP12.54□□□□□ -0.4
VTI1A-208ENST00000494728 TDGF1P13385 188 aa12.54□□□□□ -0.4
VTI1A-208ENST00000494728 HMGA1P17096 107 aaKnown RBP12.54□□□□□ -0.4
VTI1A-208ENST00000494728 EHHADHQ08426 723 aa12.54□□□□□ -0.4
VTI1A-208ENST00000494728 FCHO2Q0JRZ9 810 aa12.54□□□□□ -0.4
VTI1A-208ENST00000494728 BFSP1Q12934 665 aa12.54□□□□□ -0.4
VTI1A-208ENST00000494728 ALCAMQ13740 583 aa12.54□□□□□ -0.4
VTI1A-208ENST00000494728 GAS6Q14393 721 aa12.54□□□□□ -0.4
VTI1A-208ENST00000494728 GPR158Q5T848 1215 aa12.54□□□□□ -0.4
VTI1A-208ENST00000494728 TXNDC11Q6PKC3 985 aa12.54□□□□□ -0.4
VTI1A-208ENST00000494728 ZNF852Q6ZMS4 543 aa12.54□□□□□ -0.4
VTI1A-208ENST00000494728 GPD1LQ8N335 351 aa12.54□□□□□ -0.4
VTI1A-208ENST00000494728 TTC8Q8TAM2 541 aa12.54□□□□□ -0.4
VTI1A-208ENST00000494728 DEPDC1BQ8WUY9 529 aa12.54□□□□□ -0.4
VTI1A-208ENST00000494728 IRF7Q92985 503 aa12.54□□□□□ -0.4
VTI1A-208ENST00000494728 PI4K2AQ9BTU6 479 aa12.54□□□□□ -0.4
VTI1A-208ENST00000494728 GZF1Q9H116 711 aaPredicted RBP12.54□□□□□ -0.4
VTI1A-208ENST00000494728 PRMT8Q9NR22 394 aaPredicted RBP12.54□□□□□ -0.4
VTI1A-208ENST00000494728 HSFX1Q9UBD0 423 aa12.54□□□□□ -0.4
VTI1A-208ENST00000494728 DSEQ9UL01 958 aa12.54□□□□□ -0.4
VTI1A-208ENST00000494728 NME7Q9Y5B8 376 aa12.54□□□□□ -0.4
VTI1A-208ENST00000494728 SDK1Q7Z5N4 2213 aa12.54□□□□□ -0.4
VTI1A-208ENST00000494728 MYH10P35580 1976 aa12.53□□□□□ -0.4
VTI1A-208ENST00000494728 TGFB1I1O43294 461 aa12.53□□□□□ -0.4
VTI1A-208ENST00000494728 LAMTOR5O43504 91 aa12.53□□□□□ -0.4
VTI1A-208ENST00000494728 F13A1P00488 732 aa12.53□□□□□ -0.4
VTI1A-208ENST00000494728 LMNAP02545 664 aaKnown RBP12.53□□□□□ -0.4
VTI1A-208ENST00000494728 PAX3P23760 479 aa12.53□□□□□ -0.4
VTI1A-208ENST00000494728 HOXC13P31276 330 aa12.53□□□□□ -0.4
VTI1A-208ENST00000494728 RPS9P46781 194 aaKnown RBP12.53□□□□□ -0.4
VTI1A-208ENST00000494728 ASIC1P78348 528 aa12.53□□□□□ -0.4
VTI1A-208ENST00000494728 CSTF1Q05048 431 aaKnown RBP12.53□□□□□ -0.4
VTI1A-208ENST00000494728 TNK2Q07912 1038 aa12.53□□□□□ -0.4
VTI1A-208ENST00000494728 METTL23Q86XA0 190 aa12.53□□□□□ -0.4
VTI1A-208ENST00000494728 CCDC65Q8IXS2 484 aa12.53□□□□□ -0.4
VTI1A-208ENST00000494728 GRAMD1CQ8IYS0 662 aa12.53□□□□□ -0.4
VTI1A-208ENST00000494728 DCLK2Q8N568 766 aa12.53□□□□□ -0.4
VTI1A-208ENST00000494728 SUMF1Q8NBK3 374 aa12.53□□□□□ -0.4
VTI1A-208ENST00000494728 FAM200AQ8TCP9 573 aa12.53□□□□□ -0.4
VTI1A-208ENST00000494728 SPPL2BQ8TCT7 592 aa12.53□□□□□ -0.4
VTI1A-208ENST00000494728 NELL1Q92832 810 aa12.53□□□□□ -0.4
VTI1A-208ENST00000494728 CHFRQ96EP1 664 aa12.53□□□□□ -0.4
VTI1A-208ENST00000494728 BLZF1Q9H2G9 400 aa12.53□□□□□ -0.4
VTI1A-208ENST00000494728 CHRDQ9H2X0 955 aa12.53□□□□□ -0.4
VTI1A-208ENST00000494728 TRPV5Q9NQA5 729 aa12.53□□□□□ -0.4
VTI1A-208ENST00000494728 RBM12Q9NTZ6 932 aaKnown RBP12.53□□□□□ -0.4
VTI1A-208ENST00000494728 C2orf42Q9NWW7 574 aa12.53□□□□□ -0.4
VTI1A-208ENST00000494728 DDX43Q9NXZ2 648 aaKnown RBP12.53□□□□□ -0.4
VTI1A-208ENST00000494728 GTSE1Q9NYZ3 720 aa12.53□□□□□ -0.4
VTI1A-208ENST00000494728 HSPBP1Q9NZL4 362 aa12.53□□□□□ -0.4
VTI1A-208ENST00000494728 ITGA11Q9UKX5 1188 aa12.53□□□□□ -0.4
VTI1A-208ENST00000494728 CCL26Q9Y258 94 aa12.53□□□□□ -0.4
VTI1A-208ENST00000494728 ASB3Q9Y575 518 aa12.53□□□□□ -0.4
VTI1A-208ENST00000494728 RALGAPA1Q6GYQ0 2036 aa12.53□□□□□ -0.4
VTI1A-208ENST00000494728 MYOFQ9NZM1 2061 aa12.52□□□□□ -0.4
VTI1A-208ENST00000494728 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.52□□□□□ -0.41
VTI1A-208ENST00000494728 ZNF263O14978 683 aa12.52□□□□□ -0.41
VTI1A-208ENST00000494728 CUTAO60888 179 aa12.52□□□□□ -0.41
VTI1A-208ENST00000494728 ATP2C2O75185 946 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms