RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 TIMM13Q9Y5L4 95 aaPredicted RBP14.81□□□□□ -0.04
C9orf3-221ENST00000489562 BACE2Q9Y5Z0 518 aa14.81□□□□□ -0.04
C9orf3-221ENST00000489562 PTPRDP23468 1912 aa14.81□□□□□ -0.04
C9orf3-221ENST00000489562 TRIOBPQ9H2D6 2365 aa14.81□□□□□ -0.04
C9orf3-221ENST00000489562 COL4A4P53420 1690 aaPredicted RBP14.81□□□□□ -0.04
C9orf3-221ENST00000489562 LRRC53A6NM62 1247 aa14.8□□□□□ -0.04
C9orf3-221ENST00000489562 MFAP3LO75121 409 aa14.8□□□□□ -0.04
C9orf3-221ENST00000489562 CTSAP10619 480 aa14.8□□□□□ -0.04
C9orf3-221ENST00000489562 ZNF132P52740 706 aa14.8□□□□□ -0.04
C9orf3-221ENST00000489562 TSPY1Q01534 308 aa14.8□□□□□ -0.04
C9orf3-221ENST00000489562 PTK2Q05397 1052 aa14.8□□□□□ -0.04
C9orf3-221ENST00000489562 MAPRE1Q15691 268 aaKnown RBP14.8□□□□□ -0.04
C9orf3-221ENST00000489562 PSMD5Q16401 504 aa14.8□□□□□ -0.04
C9orf3-221ENST00000489562 CTXN3Q4LDR2 81 aa14.8□□□□□ -0.04
C9orf3-221ENST00000489562 RTP2Q5QGT7 225 aa14.8□□□□□ -0.04
C9orf3-221ENST00000489562 OSTM1Q86WC4 334 aa14.8□□□□□ -0.04
C9orf3-221ENST00000489562 CRYBG2Q8N1P7 616 aa14.8□□□□□ -0.04
C9orf3-221ENST00000489562 SPC24Q8NBT2 197 aa14.8□□□□□ -0.04
C9orf3-221ENST00000489562 SPPL3Q8TCT6 385 aa14.8□□□□□ -0.04
C9orf3-221ENST00000489562 WHAMMQ8TF30 809 aa14.8□□□□□ -0.04
C9orf3-221ENST00000489562 RIN2Q8WYP3 895 aaPredicted RBP14.8□□□□□ -0.04
C9orf3-221ENST00000489562 TMEM176AQ96HP8 235 aa14.8□□□□□ -0.04
C9orf3-221ENST00000489562 PDLIM2Q96JY6 352 aa14.8□□□□□ -0.04
C9orf3-221ENST00000489562 DNAJC7Q99615 494 aa14.8□□□□□ -0.04
C9orf3-221ENST00000489562 SYT15Q9BQS2 421 aa14.8□□□□□ -0.04
C9orf3-221ENST00000489562 LMAN2LQ9H0V9 348 aa14.8□□□□□ -0.04
C9orf3-221ENST00000489562 TLR9Q9NR96 1032 aa14.8□□□□□ -0.04
C9orf3-221ENST00000489562 MRPL17Q9NRX2 175 aaKnown RBP14.8□□□□□ -0.04
C9orf3-221ENST00000489562 AIPL1Q9NZN9 384 aa14.8□□□□□ -0.04
C9orf3-221ENST00000489562 MTRRQ9UBK8 725 aa14.8□□□□□ -0.04
C9orf3-221ENST00000489562 MTUS1Q9ULD2 1270 aa14.8□□□□□ -0.04
C9orf3-221ENST00000489562 ATG2AQ2TAZ0 1938 aa14.8□□□□□ -0.04
C9orf3-221ENST00000489562 HNRNPH3P31942 346 aaKnown RBP14.79□□□□□ -0.04
C9orf3-221ENST00000489562 RAD23BP54727 409 aa14.79□□□□□ -0.04
C9orf3-221ENST00000489562 GPM6BQ13491 265 aa14.79□□□□□ -0.04
C9orf3-221ENST00000489562 STILQ15468 1287 aa14.79□□□□□ -0.04
C9orf3-221ENST00000489562 ASIC2Q16515 512 aa14.79□□□□□ -0.04
C9orf3-221ENST00000489562 KIAA0319Q5VV43 1072 aa14.79□□□□□ -0.04
C9orf3-221ENST00000489562 TAS1R1Q7RTX1 841 aa14.79□□□□□ -0.04
C9orf3-221ENST00000489562 DCP1BQ8IZD4 617 aaKnown RBP14.79□□□□□ -0.04
C9orf3-221ENST00000489562 LNX1Q8TBB1 728 aaPredicted RBP14.79□□□□□ -0.04
C9orf3-221ENST00000489562 ELOVL4Q9GZR5 314 aa14.79□□□□□ -0.04
C9orf3-221ENST00000489562 NGRNQ9NPE2 291 aaKnown RBP14.79□□□□□ -0.04
C9orf3-221ENST00000489562 ABHD10Q9NUJ1 306 aa14.79□□□□□ -0.04
C9orf3-221ENST00000489562 ZNHIT6Q9NWK9 470 aaKnown RBP14.79□□□□□ -0.04
C9orf3-221ENST00000489562 FNIP2Q9P278 1114 aa14.79□□□□□ -0.04
C9orf3-221ENST00000489562 MTCL1Q9Y4B5 1905 aaKnown RBP14.79□□□□□ -0.04
C9orf3-221ENST00000489562 IRAK3Q9Y616 596 aa14.79□□□□□ -0.04
C9orf3-221ENST00000489562 BZW2Q9Y6E2 419 aaKnown RBP14.79□□□□□ -0.04
C9orf3-221ENST00000489562 RNF225M0QZC1 329 aaPredicted RBP14.78□□□□□ -0.04
C9orf3-221ENST00000489562 CYP26A1O43174 497 aa14.78□□□□□ -0.04
C9orf3-221ENST00000489562 TBC1D4O60343 1298 aa14.78□□□□□ -0.04
C9orf3-221ENST00000489562 LPXNO60711 386 aa14.78□□□□□ -0.04
C9orf3-221ENST00000489562 GFPT2O94808 682 aa14.78□□□□□ -0.04
C9orf3-221ENST00000489562 PDGFRBP09619 1106 aa14.78□□□□□ -0.04
C9orf3-221ENST00000489562 VDRP11473 427 aa14.78□□□□□ -0.04
C9orf3-221ENST00000489562 CLCN1P35523 988 aa14.78□□□□□ -0.04
C9orf3-221ENST00000489562 PRKCIP41743 596 aa14.78□□□□□ -0.04
C9orf3-221ENST00000489562 PDE6CP51160 858 aa14.78□□□□□ -0.04
C9orf3-221ENST00000489562 CCDC173Q0VFZ6 552 aa14.78□□□□□ -0.04
C9orf3-221ENST00000489562 SMARCB1Q12824 385 aa14.78□□□□□ -0.04
C9orf3-221ENST00000489562 SMC1AQ14683 1233 aaKnown RBP14.78□□□□□ -0.04
C9orf3-221ENST00000489562 ZNF394Q53GI3 561 aa14.78□□□□□ -0.04
C9orf3-221ENST00000489562 INTS6LQ5JSJ4 861 aaKnown RBP14.78□□□□□ -0.04
C9orf3-221ENST00000489562 TMC7Q7Z402 723 aa14.78□□□□□ -0.04
C9orf3-221ENST00000489562 ACOT1Q86TX2 421 aa14.78□□□□□ -0.04
C9orf3-221ENST00000489562 SLC4A11Q8NBS3 891 aa14.78□□□□□ -0.04
C9orf3-221ENST00000489562 B3GALNT2Q8NCR0 500 aa14.78□□□□□ -0.04
C9orf3-221ENST00000489562 POF1BQ8WVV4 589 aa14.78□□□□□ -0.04
C9orf3-221ENST00000489562 ARNTL2Q8WYA1 636 aa14.78□□□□□ -0.04
C9orf3-221ENST00000489562 B3GALT6Q96L58 329 aa14.78□□□□□ -0.04
C9orf3-221ENST00000489562 PANX2Q96RD6 677 aa14.78□□□□□ -0.04
C9orf3-221ENST00000489562 TWNKQ96RR1 684 aa14.78□□□□□ -0.04
C9orf3-221ENST00000489562 RTP3Q9BQQ7 232 aa14.78□□□□□ -0.04
C9orf3-221ENST00000489562 ALG13Q9NP73 1137 aaKnown RBP14.78□□□□□ -0.04
C9orf3-221ENST00000489562 ENTPD7Q9NQZ7 604 aa14.78□□□□□ -0.04
C9orf3-221ENST00000489562 HMGXB4Q9UGU5 601 aa14.78□□□□□ -0.04
C9orf3-221ENST00000489562 FSCN2O14926 492 aa14.77□□□□□ -0.05
C9orf3-221ENST00000489562 MED7O43513 233 aa14.77□□□□□ -0.05
C9orf3-221ENST00000489562 PNMA6AP0CW24 399 aaPredicted RBP14.77□□□□□ -0.05
C9orf3-221ENST00000489562 PTPN1P18031 435 aaKnown RBP14.77□□□□□ -0.05
C9orf3-221ENST00000489562 ACAT1P24752 427 aaKnown RBP14.77□□□□□ -0.05
C9orf3-221ENST00000489562 LMO2P25791 158 aa14.77□□□□□ -0.05
C9orf3-221ENST00000489562 GNA15P30679 374 aa14.77□□□□□ -0.05
C9orf3-221ENST00000489562 ADKP55263 362 aaKnown RBP14.77□□□□□ -0.05
C9orf3-221ENST00000489562 PTPN14Q15678 1187 aa14.77□□□□□ -0.05
C9orf3-221ENST00000489562 NFE2Q16621 373 aaPredicted RBP14.77□□□□□ -0.05
C9orf3-221ENST00000489562 MEA1Q16626 185 aa14.77□□□□□ -0.05
C9orf3-221ENST00000489562 SGO2Q562F6 1265 aa14.77□□□□□ -0.05
C9orf3-221ENST00000489562 SLC8B1Q6J4K2 584 aa14.77□□□□□ -0.05
C9orf3-221ENST00000489562 PRSS55Q6UWB4 352 aaPredicted RBP14.77□□□□□ -0.05
C9orf3-221ENST00000489562 SPRED2Q7Z698 418 aa14.77□□□□□ -0.05
C9orf3-221ENST00000489562 ZNF677Q86XU0 584 aa14.77□□□□□ -0.05
C9orf3-221ENST00000489562 TC2NQ8N9U0 490 aa14.77□□□□□ -0.05
C9orf3-221ENST00000489562 OR10T2Q8NGX3 314 aa14.77□□□□□ -0.05
C9orf3-221ENST00000489562 C2orf15Q8WU43 125 aaKnown RBP14.77□□□□□ -0.05
C9orf3-221ENST00000489562 HEXIM2Q96MH2 286 aaKnown RBP14.77□□□□□ -0.05
C9orf3-221ENST00000489562 TCF25Q9BQ70 676 aa14.77□□□□□ -0.05
C9orf3-221ENST00000489562 ZCWPW1Q9H0M4 648 aa14.77□□□□□ -0.05
C9orf3-221ENST00000489562 RXFP1Q9HBX9 757 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms