RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 TEKT1Q969V4 418 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 NGLY1Q96IV0 654 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 FAM84BQ96KN1 310 aaPredicted RBP6.55□□□□□ -1.36
VPS13D-209ENST00000487188 YIPF2Q9BWQ6 316 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 ANO3Q9BYT9 981 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 VPS11Q9H270 941 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 KLHL11Q9NVR0 708 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 SLC7A8Q9UHI5 535 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 BCL9O00512 1426 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 ADAMTS7Q9UKP4 1686 aa6.55□□□□□ -1.36
VPS13D-209ENST00000487188 ERVV-1B6SEH8 477 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 BOLA2-SMG1P6H3BVE0 249 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 K7ENM7 598 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 DNALI1O14645 258 aaPredicted RBP6.54□□□□□ -1.36
VPS13D-209ENST00000487188 CASQ2O14958 399 aaPredicted RBP6.54□□□□□ -1.36
VPS13D-209ENST00000487188 MAGEB3O15480 346 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 BMP3P12645 472 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 RAG1P15918 1043 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 PSMC6P62333 389 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 FOLH1Q04609 750 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 DLG1Q12959 904 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 MTM1Q13496 603 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 NCOA4Q13772 614 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 RASA3Q14644 834 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 COG2Q14746 738 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 KCTD21Q4G0X4 260 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 SFT2D3Q587I9 215 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 PLEKHG4Q58EX7 1191 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 ARSHQ5FYA8 562 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 AAGABQ6PD74 315 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 CCDC80Q76M96 950 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 CATSPER3Q86XQ3 398 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 PDSS2Q86YH6 399 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 RHPN2Q8IUC4 686 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 JADE3Q92613 823 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 PRPF18Q99633 342 aaKnown RBP6.54□□□□□ -1.36
VPS13D-209ENST00000487188 TRIM56Q9BRZ2 755 aaKnown RBP6.54□□□□□ -1.36
VPS13D-209ENST00000487188 HAUS8Q9BT25 410 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 TMEM117Q9H0C3 514 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 ANLNQ9NQW6 1124 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 DNAJB4Q9UDY4 337 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 TRPC5Q9UL62 973 aaPredicted RBP6.54□□□□□ -1.36
VPS13D-209ENST00000487188 SOX13Q9UN79 622 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 STK24Q9Y6E0 443 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 PNMA6FA0A0J9YX94 578 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 USP17L15C9J2P7 530 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 USP17L13C9JLJ4 530 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 USP17L11C9JVI0 530 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 USP17L18D6R9N7 530 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 USP17L22D6RA61 530 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 USP17L17D6RBQ6 530 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 USP17L19D6RCP7 530 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 USP17L20D6RJB6 530 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 IPO5O00410 1097 aaKnown RBP6.54□□□□□ -1.36
VPS13D-209ENST00000487188 PIAS1O75925 651 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 TNFAIP8O95379 198 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 GZMAP12544 262 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 SLC16A2P36021 539 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 NSFP46459 744 aaKnown RBP6.54□□□□□ -1.36
VPS13D-209ENST00000487188 TMED10P49755 219 aaKnown RBP6.54□□□□□ -1.36
VPS13D-209ENST00000487188 SLC18A1P54219 525 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 USP17L24Q0WX57 530 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 MTMR2Q13614 643 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 TTLL12Q14166 644 aaPredicted RBP6.54□□□□□ -1.36
VPS13D-209ENST00000487188 C16orf72Q14CZ0 275 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 FASTKD3Q14CZ7 662 aaKnown RBP6.54□□□□□ -1.36
VPS13D-209ENST00000487188 SIX1Q15475 284 aaPredicted RBP6.54□□□□□ -1.36
VPS13D-209ENST00000487188 VPS72Q15906 364 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 CCNG2Q16589 344 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 CTC1Q2NKJ3 1217 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 KBTBD12Q3ZCT8 623 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 PPP1R18Q6NYC8 613 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 USP17L6PQ6QN14 398 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 MIER3Q7Z3K6 550 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 TDRPQ86YL5 185 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 ARHGEF19Q8IW93 802 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 RHOT1Q8IXI2 618 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 FAM172AQ8WUF8 416 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 SKA1Q96BD8 255 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 HSPBAP1Q96EW2 488 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 MPHOSPH6Q99547 160 aaKnown RBP6.54□□□□□ -1.36
VPS13D-209ENST00000487188 MRPS26Q9BYN8 205 aaKnown RBP6.54□□□□□ -1.36
VPS13D-209ENST00000487188 IKZF4Q9H2S9 585 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 TBC1D23Q9NUY8 699 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 LZTS1Q9Y250 596 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 TSC22D4Q9Y3Q8 395 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 TRIM43BA6NCK2 446 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 PI4K2BG5E9Z4 385 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 TOM1L1O75674 476 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 CCR3P51677 355 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 AQP5P55064 265 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 XIAPP98170 497 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 SULT2A1Q06520 285 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 PTK7Q13308 1070 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 TFDP1Q14186 410 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 EFTUD2Q15029 972 aaKnown RBP eCLIP6.54□□□□□ -1.361e-6■■□□□ 14.2
VPS13D-209ENST00000487188 TBCCQ15814 346 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 NADK2Q4G0N4 442 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 TMCO4Q5TGY1 634 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 NOP9Q86U38 636 aaKnown RBP6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms