RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 GNAZP19086 355 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 MCM7P33993 719 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 CYLC1P35663 651 aaPredicted RBP8.14□□□□□ -1.11
USP4-211ENST00000485450 COPB1P53618 953 aaKnown RBP8.14□□□□□ -1.11
USP4-211ENST00000485450 SPAG1Q07617 926 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 ZNF174Q15697 407 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 TMEM266Q2M3C6 531 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 ERMARDQ5T6L9 678 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 ZNF618Q5T7W0 954 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 RINT1Q6NUQ1 792 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 TRPM8Q7Z2W7 1104 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 C7orf31Q8N865 590 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 EIF1ADQ8N9N8 165 aaKnown RBP8.14□□□□□ -1.11
USP4-211ENST00000485450 MCPH1Q8NEM0 835 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 PRCCQ92733 491 aaPredicted RBP8.14□□□□□ -1.11
USP4-211ENST00000485450 CELF4Q9BZC1 486 aaKnown RBP8.14□□□□□ -1.11
USP4-211ENST00000485450 CSRNP2Q9H175 543 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 HYOU1Q9Y4L1 999 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 HEY1Q9Y5J3 304 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 OBSL1O75147 1896 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 VWA8A3KMH1 1905 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 TTC26A0AVF1 554 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 A8MUI8 341 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 PPP1R3GB7ZBB8 358 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 KLRC4O43908 158 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 TACC1O75410 805 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 IDO1P14902 403 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 ATP6V1C1P21283 382 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 STX17P56962 302 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 NCALDP61601 193 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 GTF2BQ00403 316 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 UBXN11Q5T124 520 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 FKBP15Q5T1M5 1219 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 SLC2A7Q6PXP3 512 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 NOC3LQ8WTT2 800 aaKnown RBP8.14□□□□□ -1.11
USP4-211ENST00000485450 CLP1Q92989 425 aaKnown RBP8.14□□□□□ -1.11
USP4-211ENST00000485450 FAM136AQ96C01 138 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 ZNF317Q96PQ6 595 aaPredicted RBP8.14□□□□□ -1.11
USP4-211ENST00000485450 RPS6KC1Q96S38 1066 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 FAM129AQ9BZQ8 928 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 AZI2Q9H6S1 392 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 CNOT10Q9H9A5 744 aaKnown RBP8.14□□□□□ -1.11
USP4-211ENST00000485450 EPB41L5Q9HCM4 733 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 DMAP1Q9NPF5 467 aaPredicted RBP8.14□□□□□ -1.11
USP4-211ENST00000485450 RBM12Q9NTZ6 932 aaKnown RBP8.14□□□□□ -1.11
USP4-211ENST00000485450 CTNNAL1Q9UBT7 734 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 CITO14578 2027 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 CARNS1A5YM72 827 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 NOP56O00567 594 aaKnown RBP8.13□□□□□ -1.11
USP4-211ENST00000485450 HEXIM1O94992 359 aaKnown RBP8.13□□□□□ -1.11
USP4-211ENST00000485450 LDHAP00338 332 aaKnown RBP8.13□□□□□ -1.11
USP4-211ENST00000485450 CCDC166P0CW27 439 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 RARAP10276 462 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 ZNF76P36508 570 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 PAFAH1B1P43034 410 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 GUCY2FP51841 1108 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 ZNF844Q08AG5 666 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 ODR4Q5SWX8 454 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 GRAMD1CQ8IYS0 662 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 DEPTORQ8TB45 409 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 GJA10Q969M2 543 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 C1orf112Q9NSG2 853 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 LRWD1Q9UFC0 647 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 CAPN11Q9UMQ6 739 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 LUC7L2Q9Y383 392 aaKnown RBP8.13□□□□□ -1.11
USP4-211ENST00000485450 DUSP10Q9Y6W6 482 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 HTR3EA5X5Y0 456 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 GLRA2P23416 452 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 HOXA11P31270 313 aaPredicted RBP8.13□□□□□ -1.11
USP4-211ENST00000485450 PSMD7P51665 324 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 LMNB2Q03252 620 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 FPGSQ05932 587 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 KIF5AQ12840 1032 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 GIT2Q14161 759 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 EMC2Q15006 297 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 NAB2Q15742 525 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 P3H1Q32P28 736 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 NANOGNBQ7Z5D8 188 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 RTN4RL1Q86UN2 441 aaPredicted RBP8.13□□□□□ -1.11
USP4-211ENST00000485450 TMEM199Q8N511 208 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 CASKIN2Q8WXE0 1202 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 IFT81Q8WYA0 676 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 XPO6Q96QU8 1125 aaKnown RBP8.13□□□□□ -1.11
USP4-211ENST00000485450 SLC9A7Q96T83 725 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 ARHGEF3Q9NR81 526 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 AGPAT5Q9NUQ2 364 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 ZMYND8Q9ULU4 1186 aaPredicted RBP8.13□□□□□ -1.11
USP4-211ENST00000485450 MYH10P35580 1976 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.13□□□□□ -1.11
USP4-211ENST00000485450 MACROD2A1Z1Q3 448 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 CCDC85CA6NKD9 419 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 SUPT3HO75486 399 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 KLRC1P26715 233 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 HSD17B3P37058 310 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 TECP42680 631 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 ATP11AP98196 1134 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 GUCY2DQ02846 1103 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 SULT2A1Q06520 285 aa8.13□□□□□ -1.11
USP4-211ENST00000485450 TSR1Q2NL82 804 aaKnown RBP8.13□□□□□ -1.11
USP4-211ENST00000485450 GALNTL6Q49A17 601 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms