RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 KIAA2013Q8IYS2 634 aa13.22□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 C1orf127Q8N9H9 656 aa13.22□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 ATRIPQ8WXE1 791 aa13.22□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 ACCSQ96QU6 501 aa13.22□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 PKMYT1Q99640 499 aa13.22□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 SLC46A2Q9BY10 475 aa13.22□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 ATXN3LQ9H3M9 355 aa13.22□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 TASP1Q9H6P5 420 aa13.22□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 MRPL44Q9H9J2 332 aaKnown RBP13.22□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 TMLHEQ9NVH6 421 aa13.22□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 GDAP2Q9NXN4 497 aa13.22□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 DLL3Q9NYJ7 618 aa13.22□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 NDRG2Q9UN36 371 aaKnown RBP13.22□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 PCDHB13Q9Y5F0 798 aa13.22□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 SPTBN2O15020 2390 aa13.21□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 ATG2BQ96BY7 2078 aa13.21□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 SOBPA7XYQ1 873 aa13.21□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 PAPSS2O95340 614 aaPredicted RBP13.21□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 PRAMEF12O95522 483 aa13.21□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 LDHAP00338 332 aaKnown RBP13.21□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 HOXD13P35453 343 aa13.21□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 ALCAMQ13740 583 aa13.21□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 E2F4Q16254 413 aa13.21□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 SV2CQ496J9 727 aa13.21□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 ARHGAP29Q52LW3 1261 aa13.21□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 GPR158Q5T848 1215 aa13.21□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 TXNDC11Q6PKC3 985 aa13.21□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 CCDC73Q6ZRK6 1079 aa13.21□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 METTL23Q86XA0 190 aa13.21□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 GPIHBP1Q8IV16 184 aa13.21□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 THEM5Q8N1Q8 247 aa13.21□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 PDCL2Q8N4E4 241 aa13.21□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 LEO1Q8WVC0 666 aaPredicted RBP13.21□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 CBWD1Q9BRT8 395 aa13.21□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 ZSCAN16Q9H4T2 348 aaPredicted RBP13.21□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 SLITRK6Q9H5Y7 841 aa13.21□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 TBC1D7Q9P0N9 293 aa13.21□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 SIX4Q9UIU6 781 aa13.21□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 ZMYM5Q9UJ78 669 aa13.21□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 L1RE1Q9UN81 338 aa13.21□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 EXOC7Q9UPT5 735 aa13.21□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 NCOR2Q9Y618 2525 aa13.2□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 SDK1Q7Z5N4 2213 aa13.2□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 GABRDO14764 452 aa13.2□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 EXTL3O43909 919 aa13.2□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 GCNT3O95395 438 aa13.2□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 CDC25CP30307 473 aa13.2□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 CTHP32929 405 aa13.2□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 PNPLA4P41247 253 aa13.2□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 SOX9P48436 509 aa13.2□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 CEBPZQ03701 1054 aaKnown RBP13.2□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 CCINQ13939 588 aa13.2□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 CNNM4Q6P4Q7 775 aa13.2□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 RALGPS2Q86X27 583 aaPredicted RBP13.2□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 DCP1BQ8IZD4 617 aaKnown RBP13.2□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 CMTM8Q8IZV2 173 aa13.2□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 SPEM1Q8N4L4 309 aa13.2□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 LRRC52Q8N7C0 313 aa13.2□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 LINC00301Q8NCQ3 95 aa13.2□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 SPATA18Q8TC71 538 aa13.2□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 CHFRQ96EP1 664 aa13.2□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 SAAL1Q96ER3 474 aa13.2□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 ZFYVE19Q96K21 471 aa13.2□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 FAM83CQ9BQN1 747 aa13.2□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 ACBD6Q9BR61 282 aa13.2□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 FAM213AQ9BRX8 229 aa13.2□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 PANK2Q9BZ23 570 aa13.2□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 KBTBD4Q9NVX7 518 aa13.2□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 GTSE1Q9NYZ3 720 aa13.2□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 RALGAPA1Q6GYQ0 2036 aa13.2□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 SPAG17Q6Q759 2223 aa13.2□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 PTPRDP23468 1912 aa13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 SLC38A8A6NNN8 435 aa13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 SPECC1L-ADORA2AF8WAN1 911 aa13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 K7ESF4 209 aa13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 POLR2BP30876 1174 aaKnown RBP13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 HOXA6P31267 233 aa13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 TXLNAP40222 546 aa13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 CCR3P51677 355 aa13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 CDR1P51861 262 aa13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 NRLP54845 237 aa13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 NLRP12P59046 1061 aa13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 CYP4F8P98187 520 aa13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 TFAMQ00059 246 aaKnown RBP13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 PLCB2Q00722 1185 aa13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 SATB1Q01826 763 aa13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 MGAT5BQ3V5L5 792 aa13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 ARHGAP15Q53QZ3 475 aa13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 YAF2Q8IY57 180 aa13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 GLIS3Q8NEA6 775 aa13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 BPIFB1Q8TDL5 484 aa13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 CSGALNACT1Q8TDX6 532 aa13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 GIPC2Q8TF65 315 aa13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 CACTINQ8WUQ7 758 aaKnown RBP13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 FAM84AQ96KN4 292 aa13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 MYRFLQ96LU7 910 aa13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 ZNF560Q96MR9 790 aa13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 SEPT5Q99719 369 aaPredicted RBP13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 BACH2Q9BYV9 841 aa13.19□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 ABCB6Q9NP58 842 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms