RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 KANSL1LA0AUZ9 987 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 PNPLA4P41247 253 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 AFMP43652 599 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 ALDH1A3P47895 512 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 AMPD3Q01432 767 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 PRKCQQ04759 706 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 PLD1Q13393 1074 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 BMT2Q1RMZ1 405 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 FRMD5Q7Z6J6 570 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 METTL23Q86XA0 190 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 GPIHBP1Q8IV16 184 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 NELFCDQ8IXH7 590 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 NOC3LQ8WTT2 800 aaKnown RBP15.19■□□□□ 0.02
UPF3A-204ENST00000475218 SEPT5Q99719 369 aaPredicted RBP15.19■□□□□ 0.02
UPF3A-204ENST00000475218 HEBP1Q9NRV9 189 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 SERTAD1Q9UHV2 236 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 ASB3Q9Y575 518 aa15.19■□□□□ 0.02
UPF3A-204ENST00000475218 DMXL1Q9Y485 3027 aa15.18■□□□□ 0.02
UPF3A-204ENST00000475218 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.18■□□□□ 0.02
UPF3A-204ENST00000475218 KIAA0391O15091 583 aaKnown RBP15.18■□□□□ 0.02
UPF3A-204ENST00000475218 HAPLN1P10915 354 aaPredicted RBP15.18■□□□□ 0.02
UPF3A-204ENST00000475218 ACAT1P24752 427 aaKnown RBP15.18■□□□□ 0.02
UPF3A-204ENST00000475218 TARSP26639 723 aaKnown RBP15.18■□□□□ 0.02
UPF3A-204ENST00000475218 GPR15P49685 360 aa15.18■□□□□ 0.02
UPF3A-204ENST00000475218 PFKPQ01813 784 aa15.18■□□□□ 0.02
UPF3A-204ENST00000475218 BFSP1Q12934 665 aa15.18■□□□□ 0.02
UPF3A-204ENST00000475218 SOWAHAQ2M3V2 549 aa15.18■□□□□ 0.02
UPF3A-204ENST00000475218 TMEM150AQ86TG1 271 aa15.18■□□□□ 0.02
UPF3A-204ENST00000475218 STKLD1Q8NE28 680 aa15.18■□□□□ 0.02
UPF3A-204ENST00000475218 LEO1Q8WVC0 666 aaPredicted RBP15.18■□□□□ 0.02
UPF3A-204ENST00000475218 SLC39A2Q9NP94 309 aa15.18■□□□□ 0.02
UPF3A-204ENST00000475218 LTB4R2Q9NPC1 389 aa15.18■□□□□ 0.02
UPF3A-204ENST00000475218 CFAP45Q9UL16 551 aa15.18■□□□□ 0.02
UPF3A-204ENST00000475218 HPSEQ9Y251 543 aa15.18■□□□□ 0.02
UPF3A-204ENST00000475218 ZNF292O60281 2723 aa15.18■□□□□ 0.02
UPF3A-204ENST00000475218 KIF26AQ9ULI4 1882 aaPredicted RBP15.17■□□□□ 0.02
UPF3A-204ENST00000475218 ZNF233A6NK53 670 aa15.17■□□□□ 0.02
UPF3A-204ENST00000475218 TULP1O00294 542 aaPredicted RBP15.17■□□□□ 0.02
UPF3A-204ENST00000475218 GABRDO14764 452 aa15.17■□□□□ 0.02
UPF3A-204ENST00000475218 CLIC2O15247 247 aa15.17■□□□□ 0.02
UPF3A-204ENST00000475218 HMGA1P17096 107 aaKnown RBP15.17■□□□□ 0.02
UPF3A-204ENST00000475218 MGAT5BQ3V5L5 792 aa15.17■□□□□ 0.02
UPF3A-204ENST00000475218 TPRG1Q6ZUI0 275 aa15.17■□□□□ 0.02
UPF3A-204ENST00000475218 STXBP4Q6ZWJ1 553 aa15.17■□□□□ 0.02
UPF3A-204ENST00000475218 THEM5Q8N1Q8 247 aa15.17■□□□□ 0.02
UPF3A-204ENST00000475218 KIAA0895Q8NCT3 520 aa15.17■□□□□ 0.02
UPF3A-204ENST00000475218 PLEKHO2Q8TD55 490 aa15.17■□□□□ 0.02
UPF3A-204ENST00000475218 GIPC2Q8TF65 315 aa15.17■□□□□ 0.02
UPF3A-204ENST00000475218 CACTINQ8WUQ7 758 aaKnown RBP15.17■□□□□ 0.02
UPF3A-204ENST00000475218 KBTBD7Q8WVZ9 684 aa15.17■□□□□ 0.02
UPF3A-204ENST00000475218 SHDQ96IW2 340 aa15.17■□□□□ 0.02
UPF3A-204ENST00000475218 ABI2Q9NYB9 513 aaPredicted RBP15.17■□□□□ 0.02
UPF3A-204ENST00000475218 FAM13BQ9NYF5 915 aa15.17■□□□□ 0.02
UPF3A-204ENST00000475218 NME7Q9Y5B8 376 aa15.17■□□□□ 0.02
UPF3A-204ENST00000475218 SNX9Q9Y5X1 595 aa15.17■□□□□ 0.02
UPF3A-204ENST00000475218 FANCMQ8IYD8 2048 aa15.17■□□□□ 0.02
UPF3A-204ENST00000475218 F5P12259 2224 aa15.17■□□□□ 0.02
UPF3A-204ENST00000475218 UBE4BO95155 1302 aa15.17■□□□□ 0.02
UPF3A-204ENST00000475218 PVALEFA0A1B0GWK0 134 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 HEPACAM2A8MVW5 462 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 GFRA3O60609 400 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 PRAMEF12O95522 483 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 SLFN14P0C7P3 912 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 PFKFB1P16118 471 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 GABRR2P28476 465 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 TUFMP49411 452 aaKnown RBP15.16■□□□□ 0.02
UPF3A-204ENST00000475218 RBP5P82980 135 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 CYP4F8P98187 520 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 SNRNP35Q16560 246 aaKnown RBP15.16■□□□□ 0.02
UPF3A-204ENST00000475218 RDH13Q8NBN7 331 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 SPPL2BQ8TCT7 592 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 C2orf15Q8WU43 125 aaKnown RBP15.16■□□□□ 0.02
UPF3A-204ENST00000475218 ZNF516Q92618 1163 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 DNASE1L2Q92874 299 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 PAGE5Q96GU1 130 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 TRMT61BQ9BVS5 477 aaKnown RBP15.16■□□□□ 0.02
UPF3A-204ENST00000475218 DDX43Q9NXZ2 648 aaKnown RBP15.16■□□□□ 0.02
UPF3A-204ENST00000475218 A0A1B0GVL5 298 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 PRR23AA6NEV1 266 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 FAM170BA6NMN3 283 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 CST3P01034 146 aaPredicted RBP15.16■□□□□ 0.02
UPF3A-204ENST00000475218 KRT19P08727 400 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 TMEM191BP0C7N4 346 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 PSMC3P17980 439 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 RFX1P22670 979 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 GDI1P31150 447 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 CYP2J2P51589 502 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 CYP24A1Q07973 514 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 STK4Q13043 487 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 INTS6LQ5JSJ4 861 aaKnown RBP15.16■□□□□ 0.02
UPF3A-204ENST00000475218 WDR49Q8IV35 697 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 ARID3BQ8IVW6 561 aaPredicted RBP15.16■□□□□ 0.02
UPF3A-204ENST00000475218 MFSD6LQ8IWD5 586 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 C12orf56Q8IXR9 622 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 CLDN23Q96B33 292 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 ACBD6Q9BR61 282 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 PI4K2AQ9BTU6 479 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 OSBPL6Q9BZF3 934 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 BRD9Q9H8M2 597 aa15.16■□□□□ 0.02
UPF3A-204ENST00000475218 TRPV5Q9NQA5 729 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms