RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 BHMT2Q9H2M3 363 aa4.99□□□□□ -1.61
USP40-209ENST00000452724 DDX21Q9NR30 783 aaKnown RBP eCLIP4.99□□□□□ -1.61
USP40-209ENST00000452724 TBCCD1Q9NVR7 557 aa4.99□□□□□ -1.61
USP40-209ENST00000452724 AGAP1Q9UPQ3 857 aa4.99□□□□□ -1.61
USP40-209ENST00000452724 MED16Q9Y2X0 877 aa4.99□□□□□ -1.61
USP40-209ENST00000452724 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.99□□□□□ -1.61
USP40-209ENST00000452724 M0QYG6 137 aa4.98□□□□□ -1.61
USP40-209ENST00000452724 FRS3O43559 492 aa4.98□□□□□ -1.61
USP40-209ENST00000452724 CAND2O75155 1236 aa4.98□□□□□ -1.61
USP40-209ENST00000452724 KIF20AO95235 890 aa4.98□□□□□ -1.61
USP40-209ENST00000452724 SLC7A1P30825 629 aa4.98□□□□□ -1.61
USP40-209ENST00000452724 CXADRP78310 365 aa4.98□□□□□ -1.61
USP40-209ENST00000452724 POU6F2P78424 691 aaPredicted RBP4.98□□□□□ -1.61
USP40-209ENST00000452724 TAPT1Q6NXT6 567 aa4.98□□□□□ -1.61
USP40-209ENST00000452724 USP37Q86T82 979 aa4.98□□□□□ -1.61
USP40-209ENST00000452724 CCAR1Q8IX12 1150 aaKnown RBP4.98□□□□□ -1.61
USP40-209ENST00000452724 CAGE1Q8TC20 777 aa4.98□□□□□ -1.61
USP40-209ENST00000452724 KBTBD7Q8WVZ9 684 aa4.98□□□□□ -1.61
USP40-209ENST00000452724 RNF31Q96EP0 1072 aa4.98□□□□□ -1.61
USP40-209ENST00000452724 P2RX7Q99572 595 aaKnown RBP4.98□□□□□ -1.61
USP40-209ENST00000452724 SMOQ99835 787 aa4.98□□□□□ -1.61
USP40-209ENST00000452724 PCGF6Q9BYE7 350 aa4.98□□□□□ -1.61
USP40-209ENST00000452724 SYNPO2LQ9H987 977 aa4.98□□□□□ -1.61
USP40-209ENST00000452724 GALNT9Q9HCQ5 603 aa4.98□□□□□ -1.61
USP40-209ENST00000452724 VSX1Q9NZR4 365 aaPredicted RBP4.98□□□□□ -1.61
USP40-209ENST00000452724 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.98□□□□□ -1.61
USP40-209ENST00000452724 TPCN1Q9ULQ1 816 aa4.98□□□□□ -1.61
USP40-209ENST00000452724 CCDC195A0A1B0GUA6 201 aa4.97□□□□□ -1.61
USP40-209ENST00000452724 MASP2O00187 686 aa4.97□□□□□ -1.61
USP40-209ENST00000452724 POLRMTO00411 1230 aaKnown RBP4.97□□□□□ -1.61
USP40-209ENST00000452724 MGEA5O60502 916 aa4.97□□□□□ -1.61
USP40-209ENST00000452724 UNC5CO95185 931 aa4.97□□□□□ -1.61
USP40-209ENST00000452724 KRT18P05783 430 aaKnown RBP4.97□□□□□ -1.61
USP40-209ENST00000452724 PIM1P11309 404 aaPredicted RBP4.97□□□□□ -1.61
USP40-209ENST00000452724 KCNA2P16389 499 aa4.97□□□□□ -1.61
USP40-209ENST00000452724 PEX2P28328 305 aa4.97□□□□□ -1.61
USP40-209ENST00000452724 ARFIP2P53365 341 aa4.97□□□□□ -1.61
USP40-209ENST00000452724 TCF15Q12870 199 aa4.97□□□□□ -1.61
USP40-209ENST00000452724 SEMA5AQ13591 1074 aa4.97□□□□□ -1.61
USP40-209ENST00000452724 POLD3Q15054 466 aaPredicted RBP4.97□□□□□ -1.61
USP40-209ENST00000452724 PRR16Q569H4 304 aa4.97□□□□□ -1.61
USP40-209ENST00000452724 NOL8Q76FK4 1167 aaKnown RBP4.97□□□□□ -1.61
USP40-209ENST00000452724 RD3Q7Z3Z2 195 aa4.97□□□□□ -1.61
USP40-209ENST00000452724 SLC44A3Q8N4M1 653 aa4.97□□□□□ -1.61
USP40-209ENST00000452724 NSUN7Q8NE18 718 aaKnown RBP4.97□□□□□ -1.61
USP40-209ENST00000452724 ANKS1AQ92625 1134 aa4.97□□□□□ -1.61
USP40-209ENST00000452724 BOD1Q96IK1 185 aa4.97□□□□□ -1.61
USP40-209ENST00000452724 TRIB1Q96RU8 372 aa4.97□□□□□ -1.61
USP40-209ENST00000452724 SARGQ9BW04 601 aa4.97□□□□□ -1.61
USP40-209ENST00000452724 TRIM54Q9BYV2 358 aa4.97□□□□□ -1.61
USP40-209ENST00000452724 MRPS18AQ9NVS2 196 aaKnown RBP4.97□□□□□ -1.61
USP40-209ENST00000452724 CTTNBP2NLQ9P2B4 639 aa4.97□□□□□ -1.61
USP40-209ENST00000452724 DMTF1Q9Y222 760 aa4.97□□□□□ -1.61
USP40-209ENST00000452724 NEU2Q9Y3R4 380 aa4.97□□□□□ -1.61
USP40-209ENST00000452724 PCDHGB6Q9Y5F9 930 aa4.97□□□□□ -1.61
USP40-209ENST00000452724 COX11Q9Y6N1 276 aa4.97□□□□□ -1.61
USP40-209ENST00000452724 MAST3O60307 1309 aa4.97□□□□□ -1.61
USP40-209ENST00000452724 A0A1W2PS29 197 aa4.96□□□□□ -1.62
USP40-209ENST00000452724 MYO1FO00160 1098 aa4.96□□□□□ -1.62
USP40-209ENST00000452724 DNAJB5O75953 348 aa4.96□□□□□ -1.62
USP40-209ENST00000452724 ZFPL1O95159 310 aa4.96□□□□□ -1.62
USP40-209ENST00000452724 GRPP07492 148 aa4.96□□□□□ -1.62
USP40-209ENST00000452724 TRIM27P14373 513 aa4.96□□□□□ -1.62
USP40-209ENST00000452724 TYRP1P17643 537 aa4.96□□□□□ -1.62
USP40-209ENST00000452724 EN2P19622 333 aaPredicted RBP4.96□□□□□ -1.62
USP40-209ENST00000452724 ELLP55199 621 aaPredicted RBP4.96□□□□□ -1.62
USP40-209ENST00000452724 FOXI1Q12951 378 aa4.96□□□□□ -1.62
USP40-209ENST00000452724 CYP2A13Q16696 494 aa4.96□□□□□ -1.62
USP40-209ENST00000452724 GEN1Q17RS7 908 aa4.96□□□□□ -1.62
USP40-209ENST00000452724 COBLL1Q53SF7 1204 aa4.96□□□□□ -1.62
USP40-209ENST00000452724 FAM160B1Q5W0V3 765 aa4.96□□□□□ -1.62
USP40-209ENST00000452724 KSR2Q6VAB6 950 aa4.96□□□□□ -1.62
USP40-209ENST00000452724 ZNF783Q6ZMS7 281 aa4.96□□□□□ -1.62
USP40-209ENST00000452724 PPP1R32Q7Z5V6 425 aa4.96□□□□□ -1.62
USP40-209ENST00000452724 CLNKQ7Z7G1 428 aa4.96□□□□□ -1.62
USP40-209ENST00000452724 COLGALT2Q8IYK4 626 aa4.96□□□□□ -1.62
USP40-209ENST00000452724 Q8NA96 180 aa4.96□□□□□ -1.62
USP40-209ENST00000452724 FAM46DQ8NEK8 389 aa4.96□□□□□ -1.62
USP40-209ENST00000452724 OR6B3Q8NGW1 331 aa4.96□□□□□ -1.62
USP40-209ENST00000452724 NACC2Q96BF6 587 aa4.96□□□□□ -1.62
USP40-209ENST00000452724 LRIG1Q96JA1 1093 aa4.96□□□□□ -1.62
USP40-209ENST00000452724 BBC3Q96PG8 261 aaPredicted RBP4.96□□□□□ -1.62
USP40-209ENST00000452724 LRRC27Q9C0I9 530 aa4.96□□□□□ -1.62
USP40-209ENST00000452724 CASS4Q9NQ75 786 aa4.96□□□□□ -1.62
USP40-209ENST00000452724 ADARB2Q9NS39 739 aaKnown RBP4.96□□□□□ -1.62
USP40-209ENST00000452724 TMEM74BQ9NUR3 256 aa4.96□□□□□ -1.62
USP40-209ENST00000452724 ETAA1Q9NY74 926 aa4.96□□□□□ -1.62
USP40-209ENST00000452724 PLEKHM1Q9Y4G2 1056 aa4.96□□□□□ -1.62
USP40-209ENST00000452724 USP19O94966 1318 aa4.96□□□□□ -1.62
USP40-209ENST00000452724 SPATA31A6Q5VVP1 1343 aa4.96□□□□□ -1.62
USP40-209ENST00000452724 PRAMEF33A0A0G2JMD5 474 aa4.95□□□□□ -1.62
USP40-209ENST00000452724 MYADML2A6NDP7 307 aa4.95□□□□□ -1.62
USP40-209ENST00000452724 ISM1B1AKI9 464 aa4.95□□□□□ -1.62
USP40-209ENST00000452724 TOR1BO14657 336 aa4.95□□□□□ -1.62
USP40-209ENST00000452724 TBX3O15119 743 aa4.95□□□□□ -1.62
USP40-209ENST00000452724 PRAMEF10O60809 474 aa4.95□□□□□ -1.62
USP40-209ENST00000452724 VPS4BO75351 444 aa4.95□□□□□ -1.62
USP40-209ENST00000452724 SUN1O94901 812 aa4.95□□□□□ -1.62
USP40-209ENST00000452724 THP07101 528 aa4.95□□□□□ -1.62
USP40-209ENST00000452724 MYF5P13349 255 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms