RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 CDH9Q9ULB4 789 aa22.04■■□□□ 1.12
CHD3-204ENST00000439235 PCDHA11Q9Y5I1 949 aa22.04■■□□□ 1.12
CHD3-204ENST00000439235 TSC2P49815 1807 aa22.03■■□□□ 1.12
CHD3-204ENST00000439235 LCHNA4D1U4 455 aa22.03■■□□□ 1.12
CHD3-204ENST00000439235 SOWAHDA6NJG2 315 aa22.03■■□□□ 1.12
CHD3-204ENST00000439235 H7C4K7 107 aa22.03■■□□□ 1.12
CHD3-204ENST00000439235 PLEKP08567 350 aaPredicted RBP22.03■■□□□ 1.12
CHD3-204ENST00000439235 PDGFRBP09619 1106 aa22.03■■□□□ 1.12
CHD3-204ENST00000439235 LINC00271P0C7V0 271 aa22.03■■□□□ 1.12
CHD3-204ENST00000439235 CDR2Q01850 454 aa22.03■■□□□ 1.12
CHD3-204ENST00000439235 ORC1Q13415 861 aa22.03■■□□□ 1.12
CHD3-204ENST00000439235 STILQ15468 1287 aa22.03■■□□□ 1.12
CHD3-204ENST00000439235 USP41Q3LFD5 358 aa22.03■■□□□ 1.12
CHD3-204ENST00000439235 SGO2Q562F6 1265 aa22.03■■□□□ 1.12
CHD3-204ENST00000439235 ZNF571Q7Z3V5 609 aaPredicted RBP22.03■■□□□ 1.12
CHD3-204ENST00000439235 ACOT1Q86TX2 421 aa22.03■■□□□ 1.12
CHD3-204ENST00000439235 CEP57Q86XR8 500 aa22.03■■□□□ 1.12
CHD3-204ENST00000439235 RNF168Q8IYW5 571 aaPredicted RBP22.03■■□□□ 1.12
CHD3-204ENST00000439235 CRYBG2Q8N1P7 616 aa22.03■■□□□ 1.12
CHD3-204ENST00000439235 HEXIM2Q96MH2 286 aaKnown RBP22.03■■□□□ 1.12
CHD3-204ENST00000439235 ZNF830Q96NB3 372 aaPredicted RBP22.03■■□□□ 1.12
CHD3-204ENST00000439235 AGPAT1Q99943 283 aa22.03■■□□□ 1.12
CHD3-204ENST00000439235 SYT15Q9BQS2 421 aa22.03■■□□□ 1.12
CHD3-204ENST00000439235 ACBD6Q9BR61 282 aa22.03■■□□□ 1.12
CHD3-204ENST00000439235 TTPALQ9BTX7 342 aa22.03■■□□□ 1.12
CHD3-204ENST00000439235 HERC2P3Q9BVR0 1158 aa22.03■■□□□ 1.12
CHD3-204ENST00000439235 OXCT2Q9BYC2 517 aaPredicted RBP22.03■■□□□ 1.12
CHD3-204ENST00000439235 ACP6Q9NPH0 428 aa22.03■■□□□ 1.12
CHD3-204ENST00000439235 NME7Q9Y5B8 376 aa22.03■■□□□ 1.12
CHD3-204ENST00000439235 MKI67P46013 3256 aaKnown RBP22.02■■□□□ 1.12
CHD3-204ENST00000439235 LINC01553A4QN01 128 aa22.02■■□□□ 1.12
CHD3-204ENST00000439235 AKR1B10O60218 316 aa22.02■■□□□ 1.12
CHD3-204ENST00000439235 OAZ2O95190 189 aa22.02■■□□□ 1.12
CHD3-204ENST00000439235 EFEMP2O95967 443 aa22.02■■□□□ 1.12
CHD3-204ENST00000439235 SOD2P04179 222 aa22.02■■□□□ 1.12
CHD3-204ENST00000439235 TNFAIP3P21580 790 aa22.02■■□□□ 1.12
CHD3-204ENST00000439235 BRD2P25440 801 aaKnown RBP22.02■■□□□ 1.12
CHD3-204ENST00000439235 LMO2P25791 158 aa22.02■■□□□ 1.12
CHD3-204ENST00000439235 CTNNB1P35222 781 aa22.02■■□□□ 1.12
CHD3-204ENST00000439235 KRT17Q04695 432 aa22.02■■□□□ 1.12
CHD3-204ENST00000439235 BMS1Q14692 1282 aaKnown RBP22.02■■□□□ 1.12
CHD3-204ENST00000439235 VARS2Q5ST30 1063 aaKnown RBP22.02■■□□□ 1.12
CHD3-204ENST00000439235 TAF3Q5VWG9 929 aa22.02■■□□□ 1.12
CHD3-204ENST00000439235 ZNF280DQ6N043 979 aa22.02■■□□□ 1.12
CHD3-204ENST00000439235 ANKS3Q6ZW76 656 aa22.02■■□□□ 1.12
CHD3-204ENST00000439235 DDX53Q86TM3 631 aaKnown RBP22.02■■□□□ 1.12
CHD3-204ENST00000439235 B3GALNT2Q8NCR0 500 aa22.02■■□□□ 1.12
CHD3-204ENST00000439235 SLC20A1Q8WUM9 679 aa22.02■■□□□ 1.12
CHD3-204ENST00000439235 SYT11Q9BT88 431 aa22.02■■□□□ 1.12
CHD3-204ENST00000439235 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP22.02■■□□□ 1.12
CHD3-204ENST00000439235 PLVAPQ9BX97 442 aa22.02■■□□□ 1.12
CHD3-204ENST00000439235 PDCL3Q9H2J4 239 aa22.02■■□□□ 1.12
CHD3-204ENST00000439235 HSFX4A0A1B0GTS1 333 aaPredicted RBP22.01■■□□□ 1.11
CHD3-204ENST00000439235 HSFX3A0A1B0GWH4 333 aaPredicted RBP22.01■■□□□ 1.11
CHD3-204ENST00000439235 GRXCR1A8MXD5 290 aa22.01■■□□□ 1.11
CHD3-204ENST00000439235 IPO7O95373 1038 aaKnown RBP22.01■■□□□ 1.11
CHD3-204ENST00000439235 ACAT1P24752 427 aaKnown RBP22.01■■□□□ 1.11
CHD3-204ENST00000439235 BMPR1AP36894 532 aa22.01■■□□□ 1.11
CHD3-204ENST00000439235 KIF11P52732 1056 aa22.01■■□□□ 1.11
CHD3-204ENST00000439235 TSPY1Q01534 308 aa22.01■■□□□ 1.11
CHD3-204ENST00000439235 FAM109BQ6ICB4 259 aaPredicted RBP22.01■■□□□ 1.11
CHD3-204ENST00000439235 ZNF606Q8WXB4 792 aa22.01■■□□□ 1.11
CHD3-204ENST00000439235 DDX1Q92499 740 aaKnown RBP22.01■■□□□ 1.11
CHD3-204ENST00000439235 SAMD11Q96NU1 681 aa22.01■■□□□ 1.11
CHD3-204ENST00000439235 DPEP3Q9H4B8 488 aa22.01■■□□□ 1.11
CHD3-204ENST00000439235 SEPT11Q9NVA2 429 aaKnown RBP22.01■■□□□ 1.11
CHD3-204ENST00000439235 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP22.01■■□□□ 1.11
CHD3-204ENST00000439235 OR6C75A6NL08 312 aa22■■□□□ 1.11
CHD3-204ENST00000439235 HCRTO43612 131 aa22■■□□□ 1.11
CHD3-204ENST00000439235 FGF18O76093 207 aa22■■□□□ 1.11
CHD3-204ENST00000439235 MMEP08473 750 aa22■■□□□ 1.11
CHD3-204ENST00000439235 PTPN1P18031 435 aaKnown RBP22■■□□□ 1.11
CHD3-204ENST00000439235 PLCB3Q01970 1234 aa22■■□□□ 1.11
CHD3-204ENST00000439235 MRPL58Q14197 206 aaKnown RBP22■■□□□ 1.11
CHD3-204ENST00000439235 MAPRE1Q15691 268 aaKnown RBP22■■□□□ 1.11
CHD3-204ENST00000439235 RAB30Q15771 203 aa22■■□□□ 1.11
CHD3-204ENST00000439235 ASTE1Q2TB18 679 aaPredicted RBP22■■□□□ 1.11
CHD3-204ENST00000439235 CTXN3Q4LDR2 81 aa22■■□□□ 1.11
CHD3-204ENST00000439235 INTS6LQ5JSJ4 861 aaKnown RBP22■■□□□ 1.11
CHD3-204ENST00000439235 ARHGAP17Q68EM7 881 aa22■■□□□ 1.11
CHD3-204ENST00000439235 KIAA1841Q6NSI8 718 aa22■■□□□ 1.11
CHD3-204ENST00000439235 RAD9BQ6WBX8 426 aa22■■□□□ 1.11
CHD3-204ENST00000439235 TRIM72Q6ZMU5 477 aa22■■□□□ 1.11
CHD3-204ENST00000439235 TDHQ8IZJ6 230 aa22■■□□□ 1.11
CHD3-204ENST00000439235 RTP3Q9BQQ7 232 aa22■■□□□ 1.11
CHD3-204ENST00000439235 CEP83Q9Y592 693 aa22■■□□□ 1.11
CHD3-204ENST00000439235 KIAA1671Q9BY89 1806 aa22■■□□□ 1.11
CHD3-204ENST00000439235 O00370 1275 aa21.99■■□□□ 1.11
CHD3-204ENST00000439235 NDUFA10O95299 355 aa21.99■■□□□ 1.11
CHD3-204ENST00000439235 CALCAP01258 141 aa21.99■■□□□ 1.11
CHD3-204ENST00000439235 CA3P07451 260 aa21.99■■□□□ 1.11
CHD3-204ENST00000439235 CHRNB2P17787 502 aa21.99■■□□□ 1.11
CHD3-204ENST00000439235 GLUD2P49448 558 aa21.99■■□□□ 1.11
CHD3-204ENST00000439235 PSMC1P62191 440 aaKnown RBP21.99■■□□□ 1.11
CHD3-204ENST00000439235 FMO1Q01740 532 aa21.99■■□□□ 1.11
CHD3-204ENST00000439235 CNGA2Q16280 664 aa21.99■■□□□ 1.11
CHD3-204ENST00000439235 SLC18A3Q16572 532 aa21.99■■□□□ 1.11
CHD3-204ENST00000439235 RTP2Q5QGT7 225 aa21.99■■□□□ 1.11
CHD3-204ENST00000439235 GLYCTKQ8IVS8 523 aa21.99■■□□□ 1.11
CHD3-204ENST00000439235 PIK3R5Q8WYR1 880 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms