RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 NGRNQ9NPE2 291 aaKnown RBP13.14□□□□□ -0.31
LINC00339-204ENST00000434233 MRPL17Q9NRX2 175 aaKnown RBP13.14□□□□□ -0.31
LINC00339-204ENST00000434233 AIPL1Q9NZN9 384 aa13.14□□□□□ -0.31
LINC00339-204ENST00000434233 FNIP2Q9P278 1114 aa13.14□□□□□ -0.31
LINC00339-204ENST00000434233 CDH9Q9ULB4 789 aa13.14□□□□□ -0.31
LINC00339-204ENST00000434233 MTUS1Q9ULD2 1270 aa13.14□□□□□ -0.31
LINC00339-204ENST00000434233 KIAA1257Q9ULG3 409 aa13.14□□□□□ -0.31
LINC00339-204ENST00000434233 TMEM265A0A087WTH1 108 aa13.13□□□□□ -0.31
LINC00339-204ENST00000434233 OR6C75A6NL08 312 aa13.13□□□□□ -0.31
LINC00339-204ENST00000434233 AKR1B15C9JRZ8 316 aaPredicted RBP13.13□□□□□ -0.31
LINC00339-204ENST00000434233 F8VZ95 297 aa13.13□□□□□ -0.31
LINC00339-204ENST00000434233 GRM6O15303 877 aa13.13□□□□□ -0.31
LINC00339-204ENST00000434233 CXCL14O95715 111 aa13.13□□□□□ -0.31
LINC00339-204ENST00000434233 URODP06132 367 aa13.13□□□□□ -0.31
LINC00339-204ENST00000434233 PAEPP09466 180 aa13.13□□□□□ -0.31
LINC00339-204ENST00000434233 PDGFRBP09619 1106 aa13.13□□□□□ -0.31
LINC00339-204ENST00000434233 CCDC172P0C7W6 258 aa13.13□□□□□ -0.31
LINC00339-204ENST00000434233 PTPN1P18031 435 aaKnown RBP13.13□□□□□ -0.31
LINC00339-204ENST00000434233 CLCN1P35523 988 aa13.13□□□□□ -0.31
LINC00339-204ENST00000434233 KRT9P35527 623 aa13.13□□□□□ -0.31
LINC00339-204ENST00000434233 USP8P40818 1118 aa13.13□□□□□ -0.31
LINC00339-204ENST00000434233 FXR1P51114 621 aaKnown RBP eCLIP13.13□□□□□ -0.31
LINC00339-204ENST00000434233 ZNF132P52740 706 aa13.13□□□□□ -0.31
LINC00339-204ENST00000434233 ERVFC1P60507 584 aa13.13□□□□□ -0.31
LINC00339-204ENST00000434233 CTXN3Q4LDR2 81 aa13.13□□□□□ -0.31
LINC00339-204ENST00000434233 ZNF280DQ6N043 979 aa13.13□□□□□ -0.31
LINC00339-204ENST00000434233 TMC7Q7Z402 723 aa13.13□□□□□ -0.31
LINC00339-204ENST00000434233 SLC4A11Q8NBS3 891 aa13.13□□□□□ -0.31
LINC00339-204ENST00000434233 OR8K1Q8NGG5 319 aa13.13□□□□□ -0.31
LINC00339-204ENST00000434233 B3GALT6Q96L58 329 aa13.13□□□□□ -0.31
LINC00339-204ENST00000434233 RTP3Q9BQQ7 232 aa13.13□□□□□ -0.31
LINC00339-204ENST00000434233 ELOVL4Q9GZR5 314 aa13.13□□□□□ -0.31
LINC00339-204ENST00000434233 ZNF576Q9H609 170 aa13.13□□□□□ -0.31
LINC00339-204ENST00000434233 CERS4Q9HA82 394 aa13.13□□□□□ -0.31
LINC00339-204ENST00000434233 RXFP1Q9HBX9 757 aa13.13□□□□□ -0.31
LINC00339-204ENST00000434233 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.13□□□□□ -0.31
LINC00339-204ENST00000434233 MTRRQ9UBK8 725 aa13.13□□□□□ -0.31
LINC00339-204ENST00000434233 NME7Q9Y5B8 376 aa13.13□□□□□ -0.31
LINC00339-204ENST00000434233 IRAK3Q9Y616 596 aa13.13□□□□□ -0.31
LINC00339-204ENST00000434233 TSC2P49815 1807 aa13.12□□□□□ -0.31
LINC00339-204ENST00000434233 LRRC53A6NM62 1247 aa13.12□□□□□ -0.31
LINC00339-204ENST00000434233 GOLGA6L6A8MZA4 724 aa13.12□□□□□ -0.31
LINC00339-204ENST00000434233 FSCN2O14926 492 aa13.12□□□□□ -0.31
LINC00339-204ENST00000434233 CYP26A1O43174 497 aa13.12□□□□□ -0.31
LINC00339-204ENST00000434233 VDRP11473 427 aa13.12□□□□□ -0.31
LINC00339-204ENST00000434233 KRT5P13647 590 aa13.12□□□□□ -0.31
LINC00339-204ENST00000434233 FERP16591 822 aa13.12□□□□□ -0.31
LINC00339-204ENST00000434233 DNAJB1P25685 340 aa13.12□□□□□ -0.31
LINC00339-204ENST00000434233 HNRNPH3P31942 346 aaKnown RBP13.12□□□□□ -0.31
LINC00339-204ENST00000434233 CREMQ03060 361 aa13.12□□□□□ -0.31
LINC00339-204ENST00000434233 PTK2Q05397 1052 aa13.12□□□□□ -0.31
LINC00339-204ENST00000434233 CAMK1Q14012 370 aa13.12□□□□□ -0.31
LINC00339-204ENST00000434233 SMC1AQ14683 1233 aaKnown RBP13.12□□□□□ -0.31
LINC00339-204ENST00000434233 PSMD5Q16401 504 aa13.12□□□□□ -0.31
LINC00339-204ENST00000434233 TSR1Q2NL82 804 aaKnown RBP13.12□□□□□ -0.31
LINC00339-204ENST00000434233 ZNF394Q53GI3 561 aa13.12□□□□□ -0.31
LINC00339-204ENST00000434233 SFMBT2Q5VUG0 894 aa13.12□□□□□ -0.31
LINC00339-204ENST00000434233 FAM171BQ6P995 826 aa13.12□□□□□ -0.31
LINC00339-204ENST00000434233 PRSS55Q6UWB4 352 aaPredicted RBP13.12□□□□□ -0.31
LINC00339-204ENST00000434233 IRF2BP2Q7Z5L9 587 aa13.12□□□□□ -0.31
LINC00339-204ENST00000434233 CNGA4Q8IV77 575 aa13.12□□□□□ -0.31
LINC00339-204ENST00000434233 DCP1BQ8IZD4 617 aaKnown RBP13.12□□□□□ -0.31
LINC00339-204ENST00000434233 RBBP8NLQ8NC74 664 aaPredicted RBP13.12□□□□□ -0.31
LINC00339-204ENST00000434233 ARNTL2Q8WYA1 636 aa13.12□□□□□ -0.31
LINC00339-204ENST00000434233 HEXIM2Q96MH2 286 aaKnown RBP13.12□□□□□ -0.31
LINC00339-204ENST00000434233 TWNKQ96RR1 684 aa13.12□□□□□ -0.31
LINC00339-204ENST00000434233 SYT15Q9BQS2 421 aa13.12□□□□□ -0.31
LINC00339-204ENST00000434233 CLSTN3Q9BQT9 956 aa13.12□□□□□ -0.31
LINC00339-204ENST00000434233 ZCWPW1Q9H0M4 648 aa13.12□□□□□ -0.31
LINC00339-204ENST00000434233 TLR9Q9NR96 1032 aa13.12□□□□□ -0.31
LINC00339-204ENST00000434233 MFAP3LO75121 409 aa13.11□□□□□ -0.31
LINC00339-204ENST00000434233 GFPT2O94808 682 aa13.11□□□□□ -0.31
LINC00339-204ENST00000434233 ACAT1P24752 427 aaKnown RBP13.11□□□□□ -0.31
LINC00339-204ENST00000434233 ADKP55263 362 aaKnown RBP13.11□□□□□ -0.31
LINC00339-204ENST00000434233 TSPY1Q01534 308 aa13.11□□□□□ -0.31
LINC00339-204ENST00000434233 SMARCB1Q12824 385 aa13.11□□□□□ -0.31
LINC00339-204ENST00000434233 PTPN14Q15678 1187 aa13.11□□□□□ -0.31
LINC00339-204ENST00000434233 MAPRE1Q15691 268 aaKnown RBP13.11□□□□□ -0.31
LINC00339-204ENST00000434233 INTS6LQ5JSJ4 861 aaKnown RBP13.11□□□□□ -0.31
LINC00339-204ENST00000434233 SLC8B1Q6J4K2 584 aa13.11□□□□□ -0.31
LINC00339-204ENST00000434233 ACOT1Q86TX2 421 aa13.11□□□□□ -0.31
LINC00339-204ENST00000434233 MRPL43Q8N983 215 aaKnown RBP13.11□□□□□ -0.31
LINC00339-204ENST00000434233 SPC24Q8NBT2 197 aa13.11□□□□□ -0.31
LINC00339-204ENST00000434233 B3GALNT2Q8NCR0 500 aa13.11□□□□□ -0.31
LINC00339-204ENST00000434233 MICAL1Q8TDZ2 1067 aa13.11□□□□□ -0.31
LINC00339-204ENST00000434233 PDLIM2Q96JY6 352 aa13.11□□□□□ -0.31
LINC00339-204ENST00000434233 DNAJC7Q99615 494 aa13.11□□□□□ -0.31
LINC00339-204ENST00000434233 TCF25Q9BQ70 676 aa13.11□□□□□ -0.31
LINC00339-204ENST00000434233 DPEP3Q9H4B8 488 aa13.11□□□□□ -0.31
LINC00339-204ENST00000434233 HMGXB4Q9UGU5 601 aa13.11□□□□□ -0.31
LINC00339-204ENST00000434233 BZW2Q9Y6E2 419 aaKnown RBP13.11□□□□□ -0.31
LINC00339-204ENST00000434233 MYBPHLA2RUH7 354 aa13.1□□□□□ -0.31
LINC00339-204ENST00000434233 C2CD2LO14523 706 aa13.1□□□□□ -0.31
LINC00339-204ENST00000434233 HCRTO43612 131 aa13.1□□□□□ -0.31
LINC00339-204ENST00000434233 LPXNO60711 386 aa13.1□□□□□ -0.31
LINC00339-204ENST00000434233 ATP2C2O75185 946 aa13.1□□□□□ -0.31
LINC00339-204ENST00000434233 C1RP00736 705 aa13.1□□□□□ -0.31
LINC00339-204ENST00000434233 PNMA6AP0CW24 399 aaPredicted RBP13.1□□□□□ -0.31
LINC00339-204ENST00000434233 OR1D2P34982 312 aa13.1□□□□□ -0.31
LINC00339-204ENST00000434233 PRKCIP41743 596 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms