RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 CYP26C1Q6V0L0 522 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 GPR65Q8IYL9 337 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 FAM71AQ8IYT1 594 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 TXLNBQ8N3L3 684 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 CCDC42Q96M95 316 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 KREMEN1Q96MU8 473 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 MRPL45Q9BRJ2 306 aaKnown RBP10.75□□□□□ -0.69
CD44-207ENST00000425428 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.75□□□□□ -0.69
CD44-207ENST00000425428 NKX2-4Q9H2Z4 354 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 ABHD10Q9NUJ1 306 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 MARCH5Q9NX47 278 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 AIPL1Q9NZN9 384 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 STXBP5LQ9Y2K9 1186 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 TIMM13Q9Y5L4 95 aaPredicted RBP10.75□□□□□ -0.69
CD44-207ENST00000425428 LCHNA4D1U4 455 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 C5orf67F2Z3F1 127 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 C2CD2LO14523 706 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 CYP26A1O43174 497 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 OAZ2O95190 189 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 ITGB1P05556 798 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 TNFAIP3P21580 790 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 DNAJB2P25686 324 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 ELF1P32519 619 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 CYLC1P35663 651 aaPredicted RBP10.75□□□□□ -0.69
CD44-207ENST00000425428 JAM2P57087 298 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 ERVK-21P61565 698 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 APBA1Q02410 837 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 TBX2Q13207 712 aaPredicted RBP10.75□□□□□ -0.69
CD44-207ENST00000425428 SMC1AQ14683 1233 aaKnown RBP10.75□□□□□ -0.69
CD44-207ENST00000425428 PSMD5Q16401 504 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 PRPF38BQ5VTL8 546 aaKnown RBP10.75□□□□□ -0.69
CD44-207ENST00000425428 CCDC186Q7Z3E2 898 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 SPATA2LQ8IUW3 424 aaPredicted RBP10.75□□□□□ -0.69
CD44-207ENST00000425428 B3GALNT2Q8NCR0 500 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 ELMO3Q96BJ8 720 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 NOX5Q96PH1 765 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 ARID3AQ99856 593 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 SYT15Q9BQS2 421 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 GPR62Q9BZJ7 368 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 TTYH3Q9C0H2 523 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 LMAN2LQ9H0V9 348 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 TLR9Q9NR96 1032 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 HCSTQ9UBK5 93 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 DPP7Q9UHL4 492 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 MYO9BQ13459 2157 aa10.74□□□□□ -0.69
CD44-207ENST00000425428 GABRDO14764 452 aa10.74□□□□□ -0.69
CD44-207ENST00000425428 EPHB6O15197 1021 aa10.74□□□□□ -0.69
CD44-207ENST00000425428 CXCL14O95715 111 aa10.74□□□□□ -0.69
CD44-207ENST00000425428 MYOGP15173 224 aa10.74□□□□□ -0.69
CD44-207ENST00000425428 PTPN1P18031 435 aaKnown RBP10.74□□□□□ -0.69
CD44-207ENST00000425428 ANXA13P27216 316 aa10.74□□□□□ -0.69
CD44-207ENST00000425428 FXR1P51114 621 aaKnown RBP eCLIP10.74□□□□□ -0.69
CD44-207ENST00000425428 ARPP19P56211 112 aa10.74□□□□□ -0.69
CD44-207ENST00000425428 CYP27A1Q02318 531 aa10.74□□□□□ -0.69
CD44-207ENST00000425428 DSG1Q02413 1049 aa10.74□□□□□ -0.69
CD44-207ENST00000425428 TRIM72Q6ZMU5 477 aa10.74□□□□□ -0.69
CD44-207ENST00000425428 ACOT1Q86TX2 421 aa10.74□□□□□ -0.69
CD44-207ENST00000425428 TMTC1Q8IUR5 882 aa10.74□□□□□ -0.69
CD44-207ENST00000425428 C2orf15Q8WU43 125 aaKnown RBP10.74□□□□□ -0.69
CD44-207ENST00000425428 POF1BQ8WVV4 589 aa10.74□□□□□ -0.69
CD44-207ENST00000425428 ARNTL2Q8WYA1 636 aa10.74□□□□□ -0.69
CD44-207ENST00000425428 PIK3R5Q8WYR1 880 aa10.74□□□□□ -0.69
CD44-207ENST00000425428 BAP1Q92560 729 aa10.74□□□□□ -0.69
CD44-207ENST00000425428 KAT5Q92993 513 aa10.74□□□□□ -0.69
CD44-207ENST00000425428 DNAJC7Q99615 494 aa10.74□□□□□ -0.69
CD44-207ENST00000425428 TCF25Q9BQ70 676 aa10.74□□□□□ -0.69
CD44-207ENST00000425428 C17orf80Q9BSJ5 609 aa10.74□□□□□ -0.69
CD44-207ENST00000425428 MIS12Q9H081 205 aa10.74□□□□□ -0.69
CD44-207ENST00000425428 BACE2Q9Y5Z0 518 aa10.74□□□□□ -0.69
CD44-207ENST00000425428 SPDYE4A6NLX3 237 aa10.73□□□□□ -0.69
CD44-207ENST00000425428 AKR1B10O60218 316 aa10.73□□□□□ -0.69
CD44-207ENST00000425428 B4GALT3O60512 393 aa10.73□□□□□ -0.69
CD44-207ENST00000425428 ADH1AP07327 375 aa10.73□□□□□ -0.69
CD44-207ENST00000425428 CTSAP10619 480 aa10.73□□□□□ -0.69
CD44-207ENST00000425428 TAP1Q03518 808 aa10.73□□□□□ -0.69
CD44-207ENST00000425428 SPA17Q15506 151 aa10.73□□□□□ -0.69
CD44-207ENST00000425428 LRIT3Q3SXY7 679 aa10.73□□□□□ -0.69
CD44-207ENST00000425428 INTS6LQ5JSJ4 861 aaKnown RBP10.73□□□□□ -0.69
CD44-207ENST00000425428 CRYBG2Q8N1P7 616 aa10.73□□□□□ -0.69
CD44-207ENST00000425428 BAG1Q99933 345 aaPredicted RBP10.73□□□□□ -0.69
CD44-207ENST00000425428 ALG13Q9NP73 1137 aaKnown RBP10.73□□□□□ -0.69
CD44-207ENST00000425428 CNTN6Q9UQ52 1028 aa10.73□□□□□ -0.69
CD44-207ENST00000425428 PLXNA4Q9HCM2 1894 aa10.73□□□□□ -0.69
CD44-207ENST00000425428 TMEM265A0A087WTH1 108 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.72□□□□□ -0.69
CD44-207ENST00000425428 F8W810 466 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 H3BNC9 293 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 RBAK-RBAKDNI3L0D1 243 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 CYP11B1P15538 503 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 ACO1P21399 889 aaKnown RBP10.72□□□□□ -0.69
CD44-207ENST00000425428 ACAT1P24752 427 aaKnown RBP10.72□□□□□ -0.69
CD44-207ENST00000425428 KLRC2P26717 231 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 PBX2P40425 430 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 NDUFV1P49821 464 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 RAD23BP54727 409 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 MDH1BQ5I0G3 518 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 FAM109BQ6ICB4 259 aaPredicted RBP10.72□□□□□ -0.69
CD44-207ENST00000425428 LIMS2Q7Z4I7 341 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 TMEM173Q86WV6 379 aaPredicted RBP10.72□□□□□ -0.69
CD44-207ENST00000425428 CCDC170Q8IYT3 715 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms