RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 ACP6Q9NPH0 428 aa19.25■□□□□ 0.67
SDC1-203ENST00000403076 H7C4K7 107 aa19.24■□□□□ 0.67
SDC1-203ENST00000403076 SOD2P04179 222 aa19.24■□□□□ 0.67
SDC1-203ENST00000403076 CYP11B1P15538 503 aa19.24■□□□□ 0.67
SDC1-203ENST00000403076 PRKCIP41743 596 aa19.24■□□□□ 0.67
SDC1-203ENST00000403076 CTXN3Q4LDR2 81 aa19.24■□□□□ 0.67
SDC1-203ENST00000403076 ZNF280DQ6N043 979 aa19.24■□□□□ 0.67
SDC1-203ENST00000403076 WDR59Q6PJI9 974 aa19.24■□□□□ 0.67
SDC1-203ENST00000403076 CYP26C1Q6V0L0 522 aa19.24■□□□□ 0.67
SDC1-203ENST00000403076 VPS52Q8N1B4 723 aa19.24■□□□□ 0.67
SDC1-203ENST00000403076 RIN2Q8WYP3 895 aaPredicted RBP19.24■□□□□ 0.67
SDC1-203ENST00000403076 TGS1Q96RS0 853 aaKnown RBP19.24■□□□□ 0.67
SDC1-203ENST00000403076 SYT15Q9BQS2 421 aa19.24■□□□□ 0.67
SDC1-203ENST00000403076 PLVAPQ9BX97 442 aa19.24■□□□□ 0.67
SDC1-203ENST00000403076 PDCL3Q9H2J4 239 aa19.24■□□□□ 0.67
SDC1-203ENST00000403076 NKX2-4Q9H2Z4 354 aa19.24■□□□□ 0.67
SDC1-203ENST00000403076 DPEP3Q9H4B8 488 aa19.24■□□□□ 0.67
SDC1-203ENST00000403076 STK39Q9UEW8 545 aa19.24■□□□□ 0.67
SDC1-203ENST00000403076 NME7Q9Y5B8 376 aa19.24■□□□□ 0.67
SDC1-203ENST00000403076 ARHGEF15O94989 841 aa19.23■□□□□ 0.67
SDC1-203ENST00000403076 OAZ2O95190 189 aa19.23■□□□□ 0.67
SDC1-203ENST00000403076 VDRP11473 427 aa19.23■□□□□ 0.67
SDC1-203ENST00000403076 BRD2P25440 801 aaKnown RBP19.23■□□□□ 0.67
SDC1-203ENST00000403076 PSMC1P62191 440 aaKnown RBP19.23■□□□□ 0.67
SDC1-203ENST00000403076 TSPY1Q01534 308 aa19.23■□□□□ 0.67
SDC1-203ENST00000403076 PLCB3Q01970 1234 aa19.23■□□□□ 0.67
SDC1-203ENST00000403076 MEA1Q16626 185 aa19.23■□□□□ 0.67
SDC1-203ENST00000403076 SGO2Q562F6 1265 aa19.23■□□□□ 0.67
SDC1-203ENST00000403076 RTP2Q5QGT7 225 aa19.23■□□□□ 0.67
SDC1-203ENST00000403076 TAF3Q5VWG9 929 aa19.23■□□□□ 0.67
SDC1-203ENST00000403076 HGSNATQ68CP4 663 aa19.23■□□□□ 0.67
SDC1-203ENST00000403076 ANKS3Q6ZW76 656 aa19.23■□□□□ 0.67
SDC1-203ENST00000403076 VPS36Q86VN1 386 aa19.23■□□□□ 0.67
SDC1-203ENST00000403076 TMTC1Q8IUR5 882 aa19.23■□□□□ 0.67
SDC1-203ENST00000403076 CRYBG2Q8N1P7 616 aa19.23■□□□□ 0.67
SDC1-203ENST00000403076 CCDC112Q8NEF3 446 aa19.23■□□□□ 0.67
SDC1-203ENST00000403076 SAMD11Q96NU1 681 aa19.23■□□□□ 0.67
SDC1-203ENST00000403076 CHP1Q99653 195 aa19.23■□□□□ 0.67
SDC1-203ENST00000403076 ACBD6Q9BR61 282 aa19.23■□□□□ 0.67
SDC1-203ENST00000403076 HERC2P3Q9BVR0 1158 aa19.23■□□□□ 0.67
SDC1-203ENST00000403076 VN1R3Q9BXE9 311 aa19.23■□□□□ 0.67
SDC1-203ENST00000403076 DEF6Q9H4E7 631 aa19.23■□□□□ 0.67
SDC1-203ENST00000403076 SEPT11Q9NVA2 429 aaKnown RBP19.23■□□□□ 0.67
SDC1-203ENST00000403076 CDH9Q9ULB4 789 aa19.23■□□□□ 0.67
SDC1-203ENST00000403076 KIAA1257Q9ULG3 409 aa19.23■□□□□ 0.67
SDC1-203ENST00000403076 C2CD2LO14523 706 aa19.22■□□□□ 0.67
SDC1-203ENST00000403076 URODP06132 367 aa19.22■□□□□ 0.67
SDC1-203ENST00000403076 PTPN1P18031 435 aaKnown RBP19.22■□□□□ 0.67
SDC1-203ENST00000403076 TNFAIP3P21580 790 aa19.22■□□□□ 0.67
SDC1-203ENST00000403076 CA8P35219 290 aa19.22■□□□□ 0.67
SDC1-203ENST00000403076 EIF4A3P38919 411 aaKnown RBP19.22■□□□□ 0.67
SDC1-203ENST00000403076 GLUD2P49448 558 aa19.22■□□□□ 0.67
SDC1-203ENST00000403076 TAP1Q03518 808 aa19.22■□□□□ 0.67
SDC1-203ENST00000403076 PRSS55Q6UWB4 352 aaPredicted RBP19.22■□□□□ 0.67
SDC1-203ENST00000403076 NOP9Q86U38 636 aaKnown RBP19.22■□□□□ 0.67
SDC1-203ENST00000403076 B3GALNT2Q8NCR0 500 aa19.22■□□□□ 0.67
SDC1-203ENST00000403076 EPS8L1Q8TE68 723 aa19.22■□□□□ 0.67
SDC1-203ENST00000403076 C11orf84Q9BUA3 381 aaPredicted RBP19.22■□□□□ 0.67
SDC1-203ENST00000403076 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP19.22■□□□□ 0.67
SDC1-203ENST00000403076 SLC28A3Q9HAS3 691 aa19.22■□□□□ 0.67
SDC1-203ENST00000403076 ARHGAP20Q9P2F6 1191 aa19.22■□□□□ 0.67
SDC1-203ENST00000403076 KIAA1671Q9BY89 1806 aa19.22■□□□□ 0.67
SDC1-203ENST00000403076 MED7O43513 233 aa19.21■□□□□ 0.67
SDC1-203ENST00000403076 ATP2C2O75185 946 aa19.21■□□□□ 0.67
SDC1-203ENST00000403076 EFEMP2O95967 443 aa19.21■□□□□ 0.67
SDC1-203ENST00000403076 RB1P06400 928 aa19.21■□□□□ 0.67
SDC1-203ENST00000403076 PLEKP08567 350 aaPredicted RBP19.21■□□□□ 0.67
SDC1-203ENST00000403076 CDK17Q00537 523 aa19.21■□□□□ 0.67
SDC1-203ENST00000403076 PSMD5Q16401 504 aa19.21■□□□□ 0.67
SDC1-203ENST00000403076 PPP2R2DQ66LE6 453 aa19.21■□□□□ 0.67
SDC1-203ENST00000403076 RNF168Q8IYW5 571 aaPredicted RBP19.21■□□□□ 0.67
SDC1-203ENST00000403076 C12orf29Q8N999 325 aa19.21■□□□□ 0.67
SDC1-203ENST00000403076 SLC20A1Q8WUM9 679 aa19.21■□□□□ 0.67
SDC1-203ENST00000403076 ZNF606Q8WXB4 792 aa19.21■□□□□ 0.67
SDC1-203ENST00000403076 CCDC42Q96M95 316 aa19.21■□□□□ 0.67
SDC1-203ENST00000403076 AGPAT1Q99943 283 aa19.21■□□□□ 0.67
SDC1-203ENST00000403076 LPIN3Q9BQK8 851 aa19.21■□□□□ 0.67
SDC1-203ENST00000403076 RTP3Q9BQQ7 232 aa19.21■□□□□ 0.67
SDC1-203ENST00000403076 ALG13Q9NP73 1137 aaKnown RBP19.21■□□□□ 0.67
SDC1-203ENST00000403076 CHST7Q9NS84 486 aa19.21■□□□□ 0.67
SDC1-203ENST00000403076 FAM49BQ9NUQ9 324 aa19.21■□□□□ 0.67
SDC1-203ENST00000403076 AKR1B10O60218 316 aa19.2■□□□□ 0.66
SDC1-203ENST00000403076 DNAJB2P25686 324 aa19.2■□□□□ 0.66
SDC1-203ENST00000403076 ARPP19P56211 112 aa19.2■□□□□ 0.66
SDC1-203ENST00000403076 ERVK-21P61565 698 aa19.2■□□□□ 0.66
SDC1-203ENST00000403076 DSG1Q02413 1049 aa19.2■□□□□ 0.66
SDC1-203ENST00000403076 MRPL58Q14197 206 aaKnown RBP19.2■□□□□ 0.66
SDC1-203ENST00000403076 BMS1Q14692 1282 aaKnown RBP19.2■□□□□ 0.66
SDC1-203ENST00000403076 MDH1BQ5I0G3 518 aa19.2■□□□□ 0.66
SDC1-203ENST00000403076 INTS6LQ5JSJ4 861 aaKnown RBP19.2■□□□□ 0.66
SDC1-203ENST00000403076 ZNF571Q7Z3V5 609 aaPredicted RBP19.2■□□□□ 0.66
SDC1-203ENST00000403076 SPRED2Q7Z698 418 aa19.2■□□□□ 0.66
SDC1-203ENST00000403076 ZNF677Q86XU0 584 aa19.2■□□□□ 0.66
SDC1-203ENST00000403076 DCP1BQ8IZD4 617 aaKnown RBP19.2■□□□□ 0.66
SDC1-203ENST00000403076 FBXO22Q8NEZ5 403 aa19.2■□□□□ 0.66
SDC1-203ENST00000403076 OR10T2Q8NGX3 314 aa19.2■□□□□ 0.66
SDC1-203ENST00000403076 PIK3R5Q8WYR1 880 aa19.2■□□□□ 0.66
SDC1-203ENST00000403076 TFAP2BQ92481 460 aa19.2■□□□□ 0.66
SDC1-203ENST00000403076 CYFIP2Q96F07 1278 aa19.2■□□□□ 0.66
SDC1-203ENST00000403076 ZNF830Q96NB3 372 aaPredicted RBP19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms