RNA–Protein interactions for RNA: ENST00000398417.6

SMAD4-202, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,495 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-202ENST00000398417 IVNS1ABPQ9Y6Y0 642 aa5.19□□□□□ -1.58
SMAD4-202ENST00000398417 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP5.18□□□□□ -1.58
SMAD4-202ENST00000398417 PRPSAP2O60256 369 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 ZBTB48P10074 688 aaPredicted RBP5.18□□□□□ -1.58
SMAD4-202ENST00000398417 PSMA4P25789 261 aaKnown RBP5.18□□□□□ -1.58
SMAD4-202ENST00000398417 ELF1P32519 619 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 ARL1P40616 181 aaPredicted RBP5.18□□□□□ -1.58
SMAD4-202ENST00000398417 RBBP5Q15291 538 aaKnown RBP5.18□□□□□ -1.58
SMAD4-202ENST00000398417 MAPK6Q16659 721 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 SLC24A3Q9HC58 644 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 AVENQ9NQS1 362 aaPredicted RBP5.18□□□□□ -1.58
SMAD4-202ENST00000398417 SATB2Q9UPW6 733 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 LIASO43766 372 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 ZNF862O60290 1169 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 CALB1P05937 261 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 PTPRAP18433 802 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 WDR72Q3MJ13 1102 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 ZNF772Q68DY9 489 aaPredicted RBP5.18□□□□□ -1.58
SMAD4-202ENST00000398417 CASC4Q6P4E1 433 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 VSIG10LQ86VR7 867 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 ZNF677Q86XU0 584 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 ZNF606Q8WXB4 792 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 MFSD14AQ96MC6 490 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 STRA6Q9BX79 667 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 ASNSD1Q9NWL6 643 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.18□□□□□ -1.58
SMAD4-202ENST00000398417 A0A1B0GUA9 196 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 GRXCR2A6NFK2 248 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 TOM1L1O75674 476 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 C4BPAP04003 597 aaKnown RBP5.18□□□□□ -1.58
SMAD4-202ENST00000398417 HNRNPCP07910 306 aaKnown RBP eCLIP5.18□□□□□ -1.58
SMAD4-202ENST00000398417 TBXAS1P24557 533 aaPredicted RBP5.18□□□□□ -1.58
SMAD4-202ENST00000398417 COPS2P61201 443 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 KCNJ2P63252 427 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 GCNT1Q02742 428 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 TAF5Q15542 800 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 ACCSLQ4AC99 568 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 PPP6R3Q5H9R7 873 aaPredicted RBP5.18□□□□□ -1.58
SMAD4-202ENST00000398417 PSPC1Q8WXF1 523 aaKnown RBP5.18□□□□□ -1.58
SMAD4-202ENST00000398417 RAB3IPQ96QF0 476 aaPredicted RBP5.18□□□□□ -1.58
SMAD4-202ENST00000398417 MRPL4Q9BYD3 311 aaKnown RBP5.18□□□□□ -1.58
SMAD4-202ENST00000398417 NIF3L1Q9GZT8 377 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 GGA3Q9NZ52 723 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 WHRNQ9P202 907 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 HEY1Q9Y5J3 304 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 MED7O43513 233 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 CIB2O75838 187 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 PGK2P07205 417 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 RAD23BP54727 409 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 MAMLD1Q13495 774 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 EFTUD2Q15029 972 aaKnown RBP eCLIP5.18□□□□□ -1.586e-8■■■■■ 28.2
SMAD4-202ENST00000398417 KLHL38Q2WGJ6 581 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 CKAP2Q8WWK9 683 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 CCT6BQ92526 530 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 CSADQ9Y600 493 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 SRRM3A6NNA2 597 aaPredicted RBP5.18□□□□□ -1.58
SMAD4-202ENST00000398417 MAPK13O15264 365 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 CST3P01034 146 aaPredicted RBP5.18□□□□□ -1.58
SMAD4-202ENST00000398417 PDGFRAP16234 1089 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 BGNP21810 368 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 ROR1Q01973 937 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 TMEM132BQ14DG7 1078 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 SGSM1Q2NKQ1 1148 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 SPDYCQ5MJ68 293 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 FAM102AQ5T9C2 384 aaPredicted RBP5.18□□□□□ -1.58
SMAD4-202ENST00000398417 APBB1IPQ7Z5R6 666 aaPredicted RBP5.18□□□□□ -1.58
SMAD4-202ENST00000398417 CEP120Q8N960 986 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 HERPUD2Q9BSE4 406 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 MED10Q9BTT4 135 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 MYLK2Q9H1R3 596 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 SDAD1Q9NVU7 687 aaKnown RBP eCLIP5.18□□□□□ -1.58
SMAD4-202ENST00000398417 MYO5BQ9ULV0 1848 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 PLSCR1O15162 318 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 TARSP26639 723 aaKnown RBP5.18□□□□□ -1.58
SMAD4-202ENST00000398417 RPL22P35268 128 aaKnown RBP5.18□□□□□ -1.58
SMAD4-202ENST00000398417 C6orf163Q5TEZ5 329 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 ANKRD22Q5VYY1 191 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 TAS1R3Q7RTX0 852 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 NETO2Q8NC67 525 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 CFAP61Q8NHU2 1237 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 MICAL1Q8TDZ2 1067 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 DDX27Q96GQ7 796 aaKnown RBP5.18□□□□□ -1.58
SMAD4-202ENST00000398417 RILPQ96NA2 401 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 CXorf56Q9H5V9 222 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 ZC4H2Q9NQZ6 224 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 HESX1Q9UBX0 185 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 KDM3BQ7LBC6 1761 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 COPEO14579 308 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 ASAP2O43150 1006 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 MMP13P45452 471 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 CTCFP49711 727 aaPredicted RBP5.18□□□□□ -1.58
SMAD4-202ENST00000398417 CDH6P55285 790 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 OGDHQ02218 1023 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 TFDP2Q14188 446 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 ATF7IP2Q5U623 682 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 YTHDF3Q7Z739 585 aaKnown RBP5.18□□□□□ -1.58
SMAD4-202ENST00000398417 CCDC125Q86Z20 511 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 LMNTD2Q8IXW0 634 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 ATXN2LQ8WWM7 1075 aaKnown RBP5.18□□□□□ -1.58
SMAD4-202ENST00000398417 SGSM3Q96HU1 749 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms