RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 C1orf54Q8WWF1 131 aa16.75■□□□□ 0.27
HMGA1-202ENST00000347617 CNKSR2Q8WXI2 1034 aa16.75■□□□□ 0.27
HMGA1-202ENST00000347617 LXNQ9BS40 222 aa16.75■□□□□ 0.27
HMGA1-202ENST00000347617 TRABDQ9H4I3 376 aa16.75■□□□□ 0.27
HMGA1-202ENST00000347617 AVENQ9NQS1 362 aaPredicted RBP16.75■□□□□ 0.27
HMGA1-202ENST00000347617 NMRK1Q9NWW6 199 aa16.75■□□□□ 0.27
HMGA1-202ENST00000347617 ZNF212Q9UDV6 495 aa16.75■□□□□ 0.27
HMGA1-202ENST00000347617 FETUBQ9UGM5 382 aa16.75■□□□□ 0.27
HMGA1-202ENST00000347617 ZMYND8Q9ULU4 1186 aaPredicted RBP16.75■□□□□ 0.27
HMGA1-202ENST00000347617 EXOC1LA0A1B0GW35 172 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 GSTTP1A0A1W2PQM5 241 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 SIGLEC16A6NMB1 481 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 A8MXQ7 604 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 WDR64B1ANS9 1081 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 TRIM49P0CI25 452 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 TRIM49CP0CI26 452 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 MYBL1P10243 752 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 OSBPP22059 807 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 ICAM3P32942 547 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 MAGEA4P43358 317 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 MFAP3P55082 362 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 SLC34A1Q06495 639 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 KCNA1Q09470 495 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 KCTD19Q17RG1 926 aaPredicted RBP16.74■□□□□ 0.27
HMGA1-202ENST00000347617 DRAXINQ8NBI3 349 aaPredicted RBP16.74■□□□□ 0.27
HMGA1-202ENST00000347617 SMC1BQ8NDV3 1235 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 CLMNQ96JQ2 1002 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 SPATC1LQ9H0A9 340 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 ASCC2Q9H1I8 757 aaPredicted RBP16.74■□□□□ 0.27
HMGA1-202ENST00000347617 TMEM206Q9H813 350 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 BTBD7Q9P203 1132 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 NEU2Q9Y3R4 380 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 SLC4A7Q9Y6M7 1214 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 ZNFX1Q9P2E3 1918 aaKnown RBP16.74■□□□□ 0.27
HMGA1-202ENST00000347617 SPATA31C2B4DYI2 1134 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 DNAJC3Q13217 504 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 EAPPQ56P03 285 aaPredicted RBP16.74■□□□□ 0.27
HMGA1-202ENST00000347617 DAB2IPQ5VWQ8 1189 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 IZUMO3Q5VZ72 239 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 NLRP9Q7RTR0 991 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 OPTNQ96CV9 577 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 FGD4Q96M96 766 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 PCDHB18PQ96TA0 734 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 PAIP2Q9BPZ3 127 aaKnown RBP16.74■□□□□ 0.27
HMGA1-202ENST00000347617 BTBD10Q9BSF8 475 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 STRA6Q9BX79 667 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 PHACTR1Q9C0D0 580 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 SYNCQ9H7C4 482 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 ANKEF1Q9NU02 776 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 DLGAP2Q9P1A6 1054 aa16.74■□□□□ 0.27
HMGA1-202ENST00000347617 EMSYQ7Z589 1322 aa16.73■□□□□ 0.27
HMGA1-202ENST00000347617 CETPP11597 493 aa16.73■□□□□ 0.27
HMGA1-202ENST00000347617 VAMP7P51809 220 aa16.73■□□□□ 0.27
HMGA1-202ENST00000347617 PSMC5P62195 406 aa16.73■□□□□ 0.27
HMGA1-202ENST00000347617 AP1B1Q10567 949 aa16.73■□□□□ 0.27
HMGA1-202ENST00000347617 SNAPC2Q13487 334 aa16.73■□□□□ 0.27
HMGA1-202ENST00000347617 STXBP2Q15833 593 aa16.73■□□□□ 0.27
HMGA1-202ENST00000347617 TMEM63BQ5T3F8 832 aa16.73■□□□□ 0.27
HMGA1-202ENST00000347617 FAM91A1Q658Y4 838 aa16.73■□□□□ 0.27
HMGA1-202ENST00000347617 ACAD10Q6JQN1 1059 aa16.73■□□□□ 0.27
HMGA1-202ENST00000347617 SYCP3Q8IZU3 236 aa16.73■□□□□ 0.27
HMGA1-202ENST00000347617 SLC17A8Q8NDX2 589 aa16.73■□□□□ 0.27
HMGA1-202ENST00000347617 FIZ1Q96SL8 496 aa16.73■□□□□ 0.27
HMGA1-202ENST00000347617 GORASP1Q9BQQ3 440 aa16.73■□□□□ 0.27
HMGA1-202ENST00000347617 IL1RAPL1Q9NZN1 696 aa16.73■□□□□ 0.27
HMGA1-202ENST00000347617 ANKFY1Q9P2R3 1169 aa16.73■□□□□ 0.27
HMGA1-202ENST00000347617 TBK1Q9UHD2 729 aa16.73■□□□□ 0.27
HMGA1-202ENST00000347617 SLC45A1Q9Y2W3 748 aa16.73■□□□□ 0.27
HMGA1-202ENST00000347617 TESPA1A2RU30 521 aaPredicted RBP16.72■□□□□ 0.27
HMGA1-202ENST00000347617 ARHGEF35A5YM69 484 aa16.72■□□□□ 0.27
HMGA1-202ENST00000347617 DNAJC6O75061 913 aa16.72■□□□□ 0.27
HMGA1-202ENST00000347617 ATP9AO75110 1047 aa16.72■□□□□ 0.27
HMGA1-202ENST00000347617 CETN2P41208 172 aa16.72■□□□□ 0.27
HMGA1-202ENST00000347617 FMO1Q01740 532 aa16.72■□□□□ 0.27
HMGA1-202ENST00000347617 KRT72Q14CN4 511 aa16.72■□□□□ 0.27
HMGA1-202ENST00000347617 TAF1BQ53T94 588 aaPredicted RBP16.72■□□□□ 0.27
HMGA1-202ENST00000347617 SNX30Q5VWJ9 437 aa16.72■□□□□ 0.27
HMGA1-202ENST00000347617 NOP9Q86U38 636 aaKnown RBP16.72■□□□□ 0.27
HMGA1-202ENST00000347617 ARHGEF19Q8IW93 802 aa16.72■□□□□ 0.27
HMGA1-202ENST00000347617 TTC8Q8TAM2 541 aa16.72■□□□□ 0.27
HMGA1-202ENST00000347617 SHC3Q92529 594 aa16.72■□□□□ 0.27
HMGA1-202ENST00000347617 ALKBH8Q96BT7 664 aaKnown RBP16.72■□□□□ 0.27
HMGA1-202ENST00000347617 SLC10A4Q96EP9 437 aa16.72■□□□□ 0.27
HMGA1-202ENST00000347617 POP1Q99575 1024 aaKnown RBP16.72■□□□□ 0.27
HMGA1-202ENST00000347617 VCX3BQ9H321 246 aa16.72■□□□□ 0.27
HMGA1-202ENST00000347617 VCX3AQ9NNX9 186 aa16.72■□□□□ 0.27
HMGA1-202ENST00000347617 CHST7Q9NS84 486 aa16.72■□□□□ 0.27
HMGA1-202ENST00000347617 WRAP73Q9P2S5 460 aaPredicted RBP16.72■□□□□ 0.27
HMGA1-202ENST00000347617 STX18Q9P2W9 335 aaKnown RBP16.72■□□□□ 0.27
HMGA1-202ENST00000347617 ANGPTL2Q9UKU9 493 aa16.72■□□□□ 0.27
HMGA1-202ENST00000347617 PCDHA10Q9Y5I2 948 aa16.72■□□□□ 0.27
HMGA1-202ENST00000347617 MAP3K7O43318 606 aa16.72■□□□□ 0.27
HMGA1-202ENST00000347617 PSTPIP1O43586 416 aa16.72■□□□□ 0.27
HMGA1-202ENST00000347617 RGS20O76081 388 aa16.72■□□□□ 0.27
HMGA1-202ENST00000347617 HAUS5O94927 633 aa16.72■□□□□ 0.27
HMGA1-202ENST00000347617 SGPL1O95470 568 aa16.72■□□□□ 0.27
HMGA1-202ENST00000347617 KCNA2P16389 499 aa16.72■□□□□ 0.27
HMGA1-202ENST00000347617 EDNRBP24530 442 aa16.72■□□□□ 0.27
HMGA1-202ENST00000347617 MAPK4P31152 587 aa16.72■□□□□ 0.27
HMGA1-202ENST00000347617 RCN2Q14257 317 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms