RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 VTA1Q9NP79 307 aa9.09□□□□□ -0.95
NIPBL-201ENST00000282516 RGS18Q9NS28 235 aa9.09□□□□□ -0.95
NIPBL-201ENST00000282516 COQ6Q9Y2Z9 468 aa9.09□□□□□ -0.95
NIPBL-201ENST00000282516 MFN2O95140 757 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 HOXD10P28358 340 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 CRKLP46109 303 aaKnown RBP9.08□□□□□ -0.96
NIPBL-201ENST00000282516 CDC42EP1Q00587 391 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 TTLL9Q3SXZ7 439 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 SPANXN2Q5MJ10 180 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 SNRNP48Q6IEG0 339 aaKnown RBP9.08□□□□□ -0.96
NIPBL-201ENST00000282516 C3orf20Q8ND61 904 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 TRIM51Q9BSJ1 452 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 DGKIO75912 1065 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 KCNJ6P48051 423 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 PLEKHA7Q6IQ23 1121 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 C4orf22Q6V702 233 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 OSBPL5Q9H0X9 879 aaPredicted RBP9.08□□□□□ -0.96
NIPBL-201ENST00000282516 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.08□□□□□ -0.96
NIPBL-201ENST00000282516 PVALEFA0A1B0GWK0 134 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 USP17L3A6NCW0 530 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 USP17L4A6NCW7 530 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 SNRPAP09012 282 aaKnown RBP9.08□□□□□ -0.96
NIPBL-201ENST00000282516 RCAN1P53805 252 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 USP17L2Q6R6M4 530 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 USP17L1Q7RTZ2 530 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 LXNQ9BS40 222 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 MANSC1Q9H8J5 431 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 RAD18Q9NS91 495 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 STAP2Q9UGK3 403 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 ATP7AQ04656 1500 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 EEF2KO00418 725 aaKnown RBP9.08□□□□□ -0.96
NIPBL-201ENST00000282516 ADD2P35612 726 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 CTCFP49711 727 aaPredicted RBP9.08□□□□□ -0.96
NIPBL-201ENST00000282516 NUDT2P50583 147 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 TRIM32Q13049 653 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 C2CD6Q53TS8 623 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 PABPC5Q96DU9 382 aaKnown RBP9.08□□□□□ -0.96
NIPBL-201ENST00000282516 ZCWPW1Q9H0M4 648 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 KDM5CP41229 1560 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 STX4Q12846 297 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 ZNF438Q7Z4V0 828 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 MAGED4Q96JG8 741 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 SPATA33Q96N06 139 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 GPR63Q9BZJ6 419 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 PAK5Q9P286 719 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 HERC5Q9UII4 1024 aaKnown RBP9.08□□□□□ -0.96
NIPBL-201ENST00000282516 SH3GLB1Q9Y371 365 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 POTEMA6NI47 508 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 SKIV2LQ15477 1246 aaKnown RBP9.08□□□□□ -0.96
NIPBL-201ENST00000282516 CLEC16AQ2KHT3 1053 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 L3MBTL3Q96JM7 780 aaPredicted RBP9.08□□□□□ -0.96
NIPBL-201ENST00000282516 C6orf62Q9GZU0 229 aaPredicted RBP9.08□□□□□ -0.96
NIPBL-201ENST00000282516 SLC38A7Q9NVC3 462 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 KCNH4Q9UQ05 1017 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 POLR1DQ9Y2S0 133 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 NDUFB5O43674 189 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 GRK3P35626 688 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 THUMPD3Q9BV44 507 aaKnown RBP9.08□□□□□ -0.96
NIPBL-201ENST00000282516 ADI1Q9BV57 179 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 CYP39A1Q9NYL5 469 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 CRLS1Q9UJA2 301 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 ERN1O75460 977 aaKnown RBP9.08□□□□□ -0.96
NIPBL-201ENST00000282516 PSMC5P62195 406 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 DGKKQ5KSL6 1271 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 IRAK1BP1Q5VVH5 260 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 KDELC2Q7Z4H8 507 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 EPHX4Q8IUS5 362 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 SUGP1Q8IWZ8 645 aaKnown RBP9.08□□□□□ -0.96
NIPBL-201ENST00000282516 RTKN2Q8IZC4 609 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 C18orf8Q96DM3 657 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 ZNF333Q96JL9 665 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 FAM20AQ96MK3 541 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 SERPINB12Q96P63 405 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 MLPHQ9BV36 600 aaPredicted RBP9.08□□□□□ -0.96
NIPBL-201ENST00000282516 KLHL4Q9C0H6 718 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 MTIF3Q9H2K0 278 aaKnown RBP9.08□□□□□ -0.96
NIPBL-201ENST00000282516 SLC25A13Q9UJS0 675 aa9.08□□□□□ -0.96
NIPBL-201ENST00000282516 WDR19Q8NEZ3 1342 aa9.07□□□□□ -0.96
NIPBL-201ENST00000282516 PRR23AA6NEV1 266 aa9.07□□□□□ -0.96
NIPBL-201ENST00000282516 NOS3P29474 1203 aa9.07□□□□□ -0.96
NIPBL-201ENST00000282516 NDUFAF6Q330K2 333 aa9.07□□□□□ -0.96
NIPBL-201ENST00000282516 DALRD3Q5D0E6 543 aaKnown RBP9.07□□□□□ -0.96
NIPBL-201ENST00000282516 FBXO42Q6P3S6 717 aa9.07□□□□□ -0.96
NIPBL-201ENST00000282516 COMMD2Q86X83 199 aa9.07□□□□□ -0.96
NIPBL-201ENST00000282516 TIPINQ9BVW5 301 aa9.07□□□□□ -0.96
NIPBL-201ENST00000282516 CINPQ9BW66 212 aaPredicted RBP9.07□□□□□ -0.96
NIPBL-201ENST00000282516 ASXL2Q76L83 1435 aa9.07□□□□□ -0.96
NIPBL-201ENST00000282516 EMSYQ7Z589 1322 aa9.07□□□□□ -0.96
NIPBL-201ENST00000282516 CCT8L1PA6NM43 557 aa9.07□□□□□ -0.96
NIPBL-201ENST00000282516 DDR2Q16832 855 aa9.07□□□□□ -0.96
NIPBL-201ENST00000282516 STX12Q86Y82 276 aa9.07□□□□□ -0.96
NIPBL-201ENST00000282516 CLYBLQ8N0X4 340 aa9.07□□□□□ -0.96
NIPBL-201ENST00000282516 GREM2Q9H772 168 aa9.07□□□□□ -0.96
NIPBL-201ENST00000282516 FAM220BPB1ANY3 271 aa9.07□□□□□ -0.96
NIPBL-201ENST00000282516 B2RBV5 119 aa9.07□□□□□ -0.96
NIPBL-201ENST00000282516 ITIH2P19823 946 aa9.07□□□□□ -0.96
NIPBL-201ENST00000282516 CSNK2BP67870 215 aa9.07□□□□□ -0.96
NIPBL-201ENST00000282516 ATP8B4Q8TF62 1192 aa9.07□□□□□ -0.96
NIPBL-201ENST00000282516 CCDC126Q96EE4 140 aa9.07□□□□□ -0.96
NIPBL-201ENST00000282516 CEP44Q9C0F1 390 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms