RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 FIZ1Q96SL8 496 aa9.23□□□□□ -0.93
VPS4B-201ENST00000238497 FAM118BQ9BPY3 351 aa9.23□□□□□ -0.93
VPS4B-201ENST00000238497 APOL5Q9BWW9 433 aa9.23□□□□□ -0.93
VPS4B-201ENST00000238497 TLE6Q9H808 572 aa9.23□□□□□ -0.93
VPS4B-201ENST00000238497 PRG3Q9Y2Y8 225 aaPredicted RBP9.23□□□□□ -0.93
VPS4B-201ENST00000238497 TLDC2A0PJX2 215 aa9.22□□□□□ -0.93
VPS4B-201ENST00000238497 GAS2O43903 313 aaKnown RBP9.22□□□□□ -0.93
VPS4B-201ENST00000238497 MMEP08473 750 aa9.22□□□□□ -0.93
VPS4B-201ENST00000238497 CCDC172P0C7W6 258 aa9.22□□□□□ -0.93
VPS4B-201ENST00000238497 NRIP1P48552 1158 aa9.22□□□□□ -0.93
VPS4B-201ENST00000238497 SNX1Q13596 522 aa9.22□□□□□ -0.93
VPS4B-201ENST00000238497 DSC3Q14574 896 aa9.22□□□□□ -0.93
VPS4B-201ENST00000238497 IFI16Q16666 785 aaKnown RBP9.22□□□□□ -0.93
VPS4B-201ENST00000238497 ASTE1Q2TB18 679 aaPredicted RBP9.22□□□□□ -0.93
VPS4B-201ENST00000238497 ODF2Q5BJF6 829 aa9.22□□□□□ -0.93
VPS4B-201ENST00000238497 KCNT2Q6UVM3 1135 aa9.22□□□□□ -0.93
VPS4B-201ENST00000238497 MCPH1Q8NEM0 835 aa9.22□□□□□ -0.93
VPS4B-201ENST00000238497 EDEM3Q9BZQ6 932 aa9.22□□□□□ -0.93
VPS4B-201ENST00000238497 FAM204AQ9H8W3 233 aa9.22□□□□□ -0.93
VPS4B-201ENST00000238497 IFT122Q9HBG6 1241 aa9.22□□□□□ -0.93
VPS4B-201ENST00000238497 SIX2Q9NPC8 291 aa9.22□□□□□ -0.93
VPS4B-201ENST00000238497 BZW2Q9Y6E2 419 aaKnown RBP9.22□□□□□ -0.93
VPS4B-201ENST00000238497 LOXHD1Q8IVV2 1947 aa9.22□□□□□ -0.93
VPS4B-201ENST00000238497 MYH11P35749 1972 aa9.22□□□□□ -0.93
VPS4B-201ENST00000238497 SPTBN5Q9NRC6 3674 aaKnown RBP9.22□□□□□ -0.93
VPS4B-201ENST00000238497 SLC16A3O15427 465 aaKnown RBP9.22□□□□□ -0.93
VPS4B-201ENST00000238497 LAG3P18627 525 aa9.22□□□□□ -0.93
VPS4B-201ENST00000238497 GLRA2P23416 452 aa9.22□□□□□ -0.93
VPS4B-201ENST00000238497 HPDP32754 393 aaPredicted RBP9.22□□□□□ -0.93
VPS4B-201ENST00000238497 CAPSQ13938 189 aa9.22□□□□□ -0.93
VPS4B-201ENST00000238497 CCNI2Q6ZMN8 369 aaPredicted RBP9.22□□□□□ -0.93
VPS4B-201ENST00000238497 TAB3Q8N5C8 712 aaPredicted RBP9.22□□□□□ -0.93
VPS4B-201ENST00000238497 SPPL3Q8TCT6 385 aa9.22□□□□□ -0.93
VPS4B-201ENST00000238497 URGCPQ8TCY9 931 aa9.22□□□□□ -0.93
VPS4B-201ENST00000238497 UBLCP1Q8WVY7 318 aaPredicted RBP9.22□□□□□ -0.93
VPS4B-201ENST00000238497 SEMA4DQ92854 862 aa9.22□□□□□ -0.93
VPS4B-201ENST00000238497 ZNF653Q96CK0 615 aa9.22□□□□□ -0.93
VPS4B-201ENST00000238497 PGBD4Q96DM1 585 aa9.22□□□□□ -0.93
VPS4B-201ENST00000238497 NT5C1BQ96P26 610 aa9.22□□□□□ -0.93
VPS4B-201ENST00000238497 RNF40O75150 1001 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 KIF4AO95239 1232 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 FAM153BP0C7A2 387 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 ADSSP30520 456 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 PIK3CAP42336 1068 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 TFAMQ00059 246 aaKnown RBP9.21□□□□□ -0.93
VPS4B-201ENST00000238497 MAPK8IP2Q13387 824 aaPredicted RBP9.21□□□□□ -0.93
VPS4B-201ENST00000238497 FAM153CQ494X1 144 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 WDR44Q5JSH3 913 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 CLLU1OSQ5K130 101 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 ZBTB41Q5SVQ8 909 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 CCDC50Q8IVM0 306 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 CLP1Q92989 425 aaKnown RBP9.21□□□□□ -0.93
VPS4B-201ENST00000238497 AGPAT1Q99943 283 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 MSTO1Q9BUK6 570 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 CHST12Q9NRB3 414 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 DNAJC17Q9NVM6 304 aaKnown RBP9.21□□□□□ -0.93
VPS4B-201ENST00000238497 LMCD1Q9NZU5 365 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 KLK14Q9P0G3 267 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 STIM2Q9P246 746 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 NXF1Q9UBU9 619 aaKnown RBP9.21□□□□□ -0.93
VPS4B-201ENST00000238497 FAM153AQ9UHL3 310 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 REV3LO60673 3130 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 ZNF233A6NK53 670 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 B4GALT5O43286 388 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 RAD51CO43502 376 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 SKIP12755 728 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 PTENP60484 403 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 ORC1Q13415 861 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 NOMO2Q5JPE7 1267 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 NOTUMQ6P988 496 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 SV2AQ7L0J3 742 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 HACE1Q8IYU2 909 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 RNF10Q8N5U6 811 aaKnown RBP9.21□□□□□ -0.93
VPS4B-201ENST00000238497 COLGALT1Q8NBJ5 622 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 MSANTD4Q8NCY6 345 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 TMEM161BQ8NDZ6 487 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 TPCN2Q8NHX9 752 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 TCF25Q9BQ70 676 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 PLVAPQ9BX97 442 aa9.21□□□□□ -0.93
VPS4B-201ENST00000238497 HSF2BPO75031 334 aa9.21□□□□□ -0.94
VPS4B-201ENST00000238497 GJB6O95452 261 aa9.21□□□□□ -0.94
VPS4B-201ENST00000238497 NPTXRO95502 500 aa9.21□□□□□ -0.94
VPS4B-201ENST00000238497 EOMESO95936 686 aa9.21□□□□□ -0.94
VPS4B-201ENST00000238497 KRT14P02533 472 aa9.21□□□□□ -0.94
VPS4B-201ENST00000238497 AKAP5P24588 427 aa9.21□□□□□ -0.94
VPS4B-201ENST00000238497 TNNC1P63316 161 aa9.21□□□□□ -0.94
VPS4B-201ENST00000238497 DMTNQ08495 405 aa9.21□□□□□ -0.94
VPS4B-201ENST00000238497 TRIP13Q15645 432 aaPredicted RBP9.21□□□□□ -0.94
VPS4B-201ENST00000238497 KRT39Q6A163 491 aa9.21□□□□□ -0.94
VPS4B-201ENST00000238497 PTCRAQ6ISU1 281 aaPredicted RBP9.21□□□□□ -0.94
VPS4B-201ENST00000238497 TMEM270Q6UE05 265 aa9.21□□□□□ -0.94
VPS4B-201ENST00000238497 TMEM130Q8N3G9 435 aa9.21□□□□□ -0.94
VPS4B-201ENST00000238497 SH2D3CQ8N5H7 860 aa9.21□□□□□ -0.94
VPS4B-201ENST00000238497 OR2W6PQ8NHA6 318 aa9.21□□□□□ -0.94
VPS4B-201ENST00000238497 GAD1Q99259 594 aa9.21□□□□□ -0.94
VPS4B-201ENST00000238497 TRIM51Q9BSJ1 452 aa9.21□□□□□ -0.94
VPS4B-201ENST00000238497 EIF2AQ9BY44 585 aaKnown RBP9.21□□□□□ -0.94
VPS4B-201ENST00000238497 MRPL9Q9BYD2 267 aaKnown RBP9.21□□□□□ -0.94
VPS4B-201ENST00000238497 RSAD1Q9HA92 442 aa9.21□□□□□ -0.94
VPS4B-201ENST00000238497 TLR9Q9NR96 1032 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms