RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 ZC2HC1CQ53FD0 456 aaPredicted RBP19.93■□□□□ 0.78
CLN3-241ENST00000635861 ZNF687Q8N1G0 1237 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 THEM5Q8N1Q8 247 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 SUMF1Q8NBK3 374 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 EPSTI1Q96J88 318 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 STRA6Q9BX79 667 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 CHRDQ9H2X0 955 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 CRISPLD1Q9H336 500 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 OBP2AQ9NY56 170 aa19.93■□□□□ 0.78
CLN3-241ENST00000635861 A0A1W2PRU2 124 aa19.92■□□□□ 0.78
CLN3-241ENST00000635861 HEPACAM2A8MVW5 462 aa19.92■□□□□ 0.78
CLN3-241ENST00000635861 NRG2O14511 850 aaPredicted RBP19.92■□□□□ 0.78
CLN3-241ENST00000635861 CHADO15335 359 aa19.92■□□□□ 0.78
CLN3-241ENST00000635861 CSTF1Q05048 431 aaKnown RBP19.92■□□□□ 0.78
CLN3-241ENST00000635861 ALCAMQ13740 583 aa19.92■□□□□ 0.78
CLN3-241ENST00000635861 VEPH1Q14D04 833 aa19.92■□□□□ 0.78
CLN3-241ENST00000635861 SV2BQ7L1I2 683 aa19.92■□□□□ 0.78
CLN3-241ENST00000635861 SFR1Q86XK3 245 aa19.92■□□□□ 0.78
CLN3-241ENST00000635861 YAF2Q8IY57 180 aa19.92■□□□□ 0.78
CLN3-241ENST00000635861 TMEM130Q8N3G9 435 aa19.92■□□□□ 0.78
CLN3-241ENST00000635861 ATRIPQ8WXE1 791 aa19.92■□□□□ 0.78
CLN3-241ENST00000635861 FAM3CQ92520 227 aa19.92■□□□□ 0.78
CLN3-241ENST00000635861 ZCWPW1Q9H0M4 648 aa19.92■□□□□ 0.78
CLN3-241ENST00000635861 OLFML3Q9NRN5 406 aa19.92■□□□□ 0.78
CLN3-241ENST00000635861 DPP3Q9NY33 737 aa19.92■□□□□ 0.78
CLN3-241ENST00000635861 FBXO2Q9UK22 296 aaPredicted RBP19.92■□□□□ 0.78
CLN3-241ENST00000635861 CLIC4Q9Y696 253 aa19.92■□□□□ 0.78
CLN3-241ENST00000635861 PIAS3Q9Y6X2 628 aa19.92■□□□□ 0.78
CLN3-241ENST00000635861 ARNTLO00327 626 aa19.91■□□□□ 0.78
CLN3-241ENST00000635861 LILRB5O75023 590 aa19.91■□□□□ 0.78
CLN3-241ENST00000635861 LDHAP00338 332 aaKnown RBP19.91■□□□□ 0.78
CLN3-241ENST00000635861 GJA1P17302 382 aa19.91■□□□□ 0.78
CLN3-241ENST00000635861 PNPLA4P41247 253 aa19.91■□□□□ 0.78
CLN3-241ENST00000635861 VIPR2P41587 438 aa19.91■□□□□ 0.78
CLN3-241ENST00000635861 SV2CQ496J9 727 aa19.91■□□□□ 0.78
CLN3-241ENST00000635861 ARHGAP15Q53QZ3 475 aa19.91■□□□□ 0.78
CLN3-241ENST00000635861 RRAGBQ5VZM2 374 aa19.91■□□□□ 0.78
CLN3-241ENST00000635861 CCDC73Q6ZRK6 1079 aa19.91■□□□□ 0.78
CLN3-241ENST00000635861 DYMQ7RTS9 669 aa19.91■□□□□ 0.78
CLN3-241ENST00000635861 DNAJB7Q7Z6W7 309 aaPredicted RBP19.91■□□□□ 0.78
CLN3-241ENST00000635861 GPR161Q8N6U8 529 aaKnown RBP19.91■□□□□ 0.78
CLN3-241ENST00000635861 ATAD1Q8NBU5 361 aa19.91■□□□□ 0.78
CLN3-241ENST00000635861 SPPL2BQ8TCT7 592 aa19.91■□□□□ 0.78
CLN3-241ENST00000635861 CSGALNACT1Q8TDX6 532 aa19.91■□□□□ 0.78
CLN3-241ENST00000635861 POMGNT1Q8WZA1 660 aa19.91■□□□□ 0.78
CLN3-241ENST00000635861 ZNF560Q96MR9 790 aa19.91■□□□□ 0.78
CLN3-241ENST00000635861 HINFPQ9BQA5 517 aa19.91■□□□□ 0.78
CLN3-241ENST00000635861 C8orf33Q9H7E9 229 aaPredicted RBP19.91■□□□□ 0.78
CLN3-241ENST00000635861 MRPL44Q9H9J2 332 aaKnown RBP19.91■□□□□ 0.78
CLN3-241ENST00000635861 CYB561D2O14569 222 aa19.9■□□□□ 0.78
CLN3-241ENST00000635861 NRLP54845 237 aa19.9■□□□□ 0.78
CLN3-241ENST00000635861 L1TD1Q5T7N2 865 aaKnown RBP19.9■□□□□ 0.78
CLN3-241ENST00000635861 CRELD2Q6UXH1 353 aaPredicted RBP19.9■□□□□ 0.78
CLN3-241ENST00000635861 OR10T2Q8NGX3 314 aa19.9■□□□□ 0.78
CLN3-241ENST00000635861 INTS4Q96HW7 963 aaKnown RBP19.9■□□□□ 0.78
CLN3-241ENST00000635861 ACCSQ96QU6 501 aa19.9■□□□□ 0.78
CLN3-241ENST00000635861 SLC27A5Q9Y2P5 690 aa19.9■□□□□ 0.78
CLN3-241ENST00000635861 PCDHB13Q9Y5F0 798 aa19.9■□□□□ 0.78
CLN3-241ENST00000635861 GPR179Q6PRD1 2367 aa19.9■□□□□ 0.78
CLN3-241ENST00000635861 CDC25CP30307 473 aa19.89■□□□□ 0.77
CLN3-241ENST00000635861 CCR3P51677 355 aa19.89■□□□□ 0.77
CLN3-241ENST00000635861 MTAPQ13126 283 aa19.89■□□□□ 0.77
CLN3-241ENST00000635861 RESTQ13127 1097 aa19.89■□□□□ 0.77
CLN3-241ENST00000635861 SLC39A12Q504Y0 691 aa19.89■□□□□ 0.77
CLN3-241ENST00000635861 ARHGAP29Q52LW3 1261 aa19.89■□□□□ 0.77
CLN3-241ENST00000635861 USP49Q70CQ1 688 aa19.89■□□□□ 0.77
CLN3-241ENST00000635861 GAREM2Q75VX8 874 aa19.89■□□□□ 0.77
CLN3-241ENST00000635861 ARID3BQ8IVW6 561 aaPredicted RBP19.89■□□□□ 0.77
CLN3-241ENST00000635861 DCP1BQ8IZD4 617 aaKnown RBP19.89■□□□□ 0.77
CLN3-241ENST00000635861 SECISBP2LQ93073 1101 aaKnown RBP19.89■□□□□ 0.77
CLN3-241ENST00000635861 DNAJC19Q96DA6 116 aa19.89■□□□□ 0.77
CLN3-241ENST00000635861 TMEM209Q96SK2 561 aa19.89■□□□□ 0.77
CLN3-241ENST00000635861 PYM1Q9BRP8 204 aaKnown RBP19.89■□□□□ 0.77
CLN3-241ENST00000635861 EPC1Q9H2F5 836 aa19.89■□□□□ 0.77
CLN3-241ENST00000635861 ATXN3LQ9H3M9 355 aa19.89■□□□□ 0.77
CLN3-241ENST00000635861 NDRG2Q9UN36 371 aaKnown RBP19.89■□□□□ 0.77
CLN3-241ENST00000635861 KPNA7A9QM74 516 aa19.88■□□□□ 0.77
CLN3-241ENST00000635861 TISP43B9A030 160 aa19.88■□□□□ 0.77
CLN3-241ENST00000635861 DPYSL4O14531 572 aa19.88■□□□□ 0.77
CLN3-241ENST00000635861 SYT1P21579 422 aa19.88■□□□□ 0.77
CLN3-241ENST00000635861 GARTP22102 1010 aa19.88■□□□□ 0.77
CLN3-241ENST00000635861 GABRR2P28476 465 aa19.88■□□□□ 0.77
CLN3-241ENST00000635861 ADSSP30520 456 aa19.88■□□□□ 0.77
CLN3-241ENST00000635861 PLCB2Q00722 1185 aa19.88■□□□□ 0.77
CLN3-241ENST00000635861 EFCAB13Q8IY85 973 aa19.88■□□□□ 0.77
CLN3-241ENST00000635861 CACTINQ8WUQ7 758 aaKnown RBP19.88■□□□□ 0.77
CLN3-241ENST00000635861 GCNAQ96QF7 691 aa19.88■□□□□ 0.77
CLN3-241ENST00000635861 MKNK1Q9BUB5 465 aa19.88■□□□□ 0.77
CLN3-241ENST00000635861 RALGAPA1Q6GYQ0 2036 aa19.88■□□□□ 0.77
CLN3-241ENST00000635861 FRMD3A2A2Y4 597 aa19.87■□□□□ 0.77
CLN3-241ENST00000635861 MYMKA6NI61 221 aa19.87■□□□□ 0.77
CLN3-241ENST00000635861 SOBPA7XYQ1 873 aa19.87■□□□□ 0.77
CLN3-241ENST00000635861 LRRC32Q14392 662 aa19.87■□□□□ 0.77
CLN3-241ENST00000635861 MGAT5BQ3V5L5 792 aa19.87■□□□□ 0.77
CLN3-241ENST00000635861 BRSK2Q8IWQ3 736 aa19.87■□□□□ 0.77
CLN3-241ENST00000635861 KIAA2013Q8IYS2 634 aa19.87■□□□□ 0.77
CLN3-241ENST00000635861 SPATA18Q8TC71 538 aa19.87■□□□□ 0.77
CLN3-241ENST00000635861 SEPT5Q99719 369 aaPredicted RBP19.87■□□□□ 0.77
CLN3-241ENST00000635861 ZSCAN16Q9H4T2 348 aaPredicted RBP19.87■□□□□ 0.77
CLN3-241ENST00000635861 TASP1Q9H6P5 420 aa19.87■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms