RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 ZNF397Q8NF99 534 aaPredicted RBP15.34■□□□□ 0.05
UPF1-211ENST00000600868 SPAG5Q96R06 1193 aa15.34■□□□□ 0.05
UPF1-211ENST00000600868 MRPL45Q9BRJ2 306 aaKnown RBP15.34■□□□□ 0.05
UPF1-211ENST00000600868 TTPALQ9BTX7 342 aa15.34■□□□□ 0.05
UPF1-211ENST00000600868 HERC2P3Q9BVR0 1158 aa15.34■□□□□ 0.05
UPF1-211ENST00000600868 GPR88Q9GZN0 384 aa15.34■□□□□ 0.05
UPF1-211ENST00000600868 NKX2-4Q9H2Z4 354 aa15.34■□□□□ 0.05
UPF1-211ENST00000600868 CHST7Q9NS84 486 aa15.34■□□□□ 0.05
UPF1-211ENST00000600868 IMPACTQ9P2X3 320 aa15.34■□□□□ 0.05
UPF1-211ENST00000600868 BARX2Q9UMQ3 279 aaPredicted RBP15.34■□□□□ 0.05
UPF1-211ENST00000600868 LZTS1Q9Y250 596 aa15.34■□□□□ 0.05
UPF1-211ENST00000600868 LUC7L2Q9Y383 392 aaKnown RBP15.34■□□□□ 0.05
UPF1-211ENST00000600868 F8VZ95 297 aa15.33■□□□□ 0.04
UPF1-211ENST00000600868 RNF225M0QZC1 329 aaPredicted RBP15.33■□□□□ 0.04
UPF1-211ENST00000600868 FOXN3O00409 490 aaPredicted RBP15.33■□□□□ 0.04
UPF1-211ENST00000600868 CILPO75339 1184 aa15.33■□□□□ 0.04
UPF1-211ENST00000600868 OAZ2O95190 189 aa15.33■□□□□ 0.04
UPF1-211ENST00000600868 CD58P19256 250 aa15.33■□□□□ 0.04
UPF1-211ENST00000600868 DNAJB2P25686 324 aa15.33■□□□□ 0.04
UPF1-211ENST00000600868 CASP14P31944 242 aa15.33■□□□□ 0.04
UPF1-211ENST00000600868 GNL1P36915 607 aaPredicted RBP15.33■□□□□ 0.04
UPF1-211ENST00000600868 FXR1P51114 621 aaKnown RBP eCLIP15.33■□□□□ 0.04
UPF1-211ENST00000600868 ZBED6P86452 979 aa15.33■□□□□ 0.04
UPF1-211ENST00000600868 UBE3AQ05086 875 aa15.33■□□□□ 0.04
UPF1-211ENST00000600868 MRPL58Q14197 206 aaKnown RBP15.33■□□□□ 0.04
UPF1-211ENST00000600868 PPP2R2DQ66LE6 453 aa15.33■□□□□ 0.04
UPF1-211ENST00000600868 OVOS1Q6IE37 1185 aa15.33■□□□□ 0.04
UPF1-211ENST00000600868 TAS1R1Q7RTX1 841 aa15.33■□□□□ 0.04
UPF1-211ENST00000600868 OSTM1Q86WC4 334 aa15.33■□□□□ 0.04
UPF1-211ENST00000600868 FMNL3Q8IVF7 1028 aa15.33■□□□□ 0.04
UPF1-211ENST00000600868 FAM71AQ8IYT1 594 aa15.33■□□□□ 0.04
UPF1-211ENST00000600868 C11orf84Q9BUA3 381 aaPredicted RBP15.33■□□□□ 0.04
UPF1-211ENST00000600868 NUCKS1Q9H1E3 243 aaKnown RBP15.33■□□□□ 0.04
UPF1-211ENST00000600868 SNX25Q9H3E2 840 aa15.33■□□□□ 0.04
UPF1-211ENST00000600868 SLC28A3Q9HAS3 691 aa15.33■□□□□ 0.04
UPF1-211ENST00000600868 PUF60Q9UHX1 559 aaKnown RBP15.33■□□□□ 0.04
UPF1-211ENST00000600868 COLQQ9Y215 455 aaPredicted RBP15.33■□□□□ 0.04
UPF1-211ENST00000600868 PCDHB4Q9Y5E5 795 aa15.33■□□□□ 0.04
UPF1-211ENST00000600868 TIMM13Q9Y5L4 95 aaPredicted RBP15.33■□□□□ 0.04
UPF1-211ENST00000600868 TSC2P49815 1807 aa15.33■□□□□ 0.04
UPF1-211ENST00000600868 SOX5P35711 763 aa15.32■□□□□ 0.04
UPF1-211ENST00000600868 STAT1P42224 750 aa15.32■□□□□ 0.04
UPF1-211ENST00000600868 ZNF132P52740 706 aa15.32■□□□□ 0.04
UPF1-211ENST00000600868 NDST1P52848 882 aa15.32■□□□□ 0.04
UPF1-211ENST00000600868 DSG1Q02413 1049 aa15.32■□□□□ 0.04
UPF1-211ENST00000600868 YWHAHQ04917 246 aaPredicted RBP15.32■□□□□ 0.04
UPF1-211ENST00000600868 ARID5BQ14865 1188 aa15.32■□□□□ 0.04
UPF1-211ENST00000600868 VARS2Q5ST30 1063 aaKnown RBP15.32■□□□□ 0.04
UPF1-211ENST00000600868 PDXDC1Q6P996 788 aa15.32■□□□□ 0.04
UPF1-211ENST00000600868 TMEM270Q6UE05 265 aa15.32■□□□□ 0.04
UPF1-211ENST00000600868 SPRED2Q7Z698 418 aa15.32■□□□□ 0.04
UPF1-211ENST00000600868 VPS52Q8N1B4 723 aa15.32■□□□□ 0.04
UPF1-211ENST00000600868 THEM5Q8N1Q8 247 aa15.32■□□□□ 0.04
UPF1-211ENST00000600868 OR6B3Q8NGW1 331 aa15.32■□□□□ 0.04
UPF1-211ENST00000600868 SPPL3Q8TCT6 385 aa15.32■□□□□ 0.04
UPF1-211ENST00000600868 WHAMMQ8TF30 809 aa15.32■□□□□ 0.04
UPF1-211ENST00000600868 CPLX3Q8WVH0 158 aa15.32■□□□□ 0.04
UPF1-211ENST00000600868 SYN2Q92777 582 aaPredicted RBP15.32■□□□□ 0.04
UPF1-211ENST00000600868 TIFAQ96CG3 184 aa15.32■□□□□ 0.04
UPF1-211ENST00000600868 OXCT2Q9BYC2 517 aaPredicted RBP15.32■□□□□ 0.04
UPF1-211ENST00000600868 DDX43Q9NXZ2 648 aaKnown RBP15.32■□□□□ 0.04
UPF1-211ENST00000600868 STXBP5LQ9Y2K9 1186 aa15.32■□□□□ 0.04
UPF1-211ENST00000600868 NME7Q9Y5B8 376 aa15.32■□□□□ 0.04
UPF1-211ENST00000600868 VWA8A3KMH1 1905 aa15.32■□□□□ 0.04
UPF1-211ENST00000600868 RANBP2P49792 3224 aaKnown RBP15.32■□□□□ 0.04
UPF1-211ENST00000600868 AKR1B15C9JRZ8 316 aaPredicted RBP15.31■□□□□ 0.04
UPF1-211ENST00000600868 H3BNC9 293 aa15.31■□□□□ 0.04
UPF1-211ENST00000600868 H7C4K7 107 aa15.31■□□□□ 0.04
UPF1-211ENST00000600868 TBC1D4O60343 1298 aa15.31■□□□□ 0.04
UPF1-211ENST00000600868 KRT5P13647 590 aa15.31■□□□□ 0.04
UPF1-211ENST00000600868 LMO2P25791 158 aa15.31■□□□□ 0.04
UPF1-211ENST00000600868 PCSK1P29120 753 aa15.31■□□□□ 0.04
UPF1-211ENST00000600868 KRT9P35527 623 aa15.31■□□□□ 0.04
UPF1-211ENST00000600868 GLUD2P49448 558 aa15.31■□□□□ 0.04
UPF1-211ENST00000600868 RAD23BP54727 409 aa15.31■□□□□ 0.04
UPF1-211ENST00000600868 RTP2Q5QGT7 225 aa15.31■□□□□ 0.04
UPF1-211ENST00000600868 KIAA0319Q5VV43 1072 aa15.31■□□□□ 0.04
UPF1-211ENST00000600868 KIAA1841Q6NSI8 718 aa15.31■□□□□ 0.04
UPF1-211ENST00000600868 ANKS3Q6ZW76 656 aa15.31■□□□□ 0.04
UPF1-211ENST00000600868 CEP57Q86XR8 500 aa15.31■□□□□ 0.04
UPF1-211ENST00000600868 CNGA4Q8IV77 575 aa15.31■□□□□ 0.04
UPF1-211ENST00000600868 CRYBG2Q8N1P7 616 aa15.31■□□□□ 0.04
UPF1-211ENST00000600868 SPC24Q8NBT2 197 aa15.31■□□□□ 0.04
UPF1-211ENST00000600868 RBBP8NLQ8NC74 664 aaPredicted RBP15.31■□□□□ 0.04
UPF1-211ENST00000600868 FBXO22Q8NEZ5 403 aa15.31■□□□□ 0.04
UPF1-211ENST00000600868 LNX1Q8TBB1 728 aaPredicted RBP15.31■□□□□ 0.04
UPF1-211ENST00000600868 PIK3R5Q8WYR1 880 aa15.31■□□□□ 0.04
UPF1-211ENST00000600868 B3GALT6Q96L58 329 aa15.31■□□□□ 0.04
UPF1-211ENST00000600868 RTP3Q9BQQ7 232 aa15.31■□□□□ 0.04
UPF1-211ENST00000600868 ACBD6Q9BR61 282 aa15.31■□□□□ 0.04
UPF1-211ENST00000600868 NT5C1AQ9BXI3 368 aa15.31■□□□□ 0.04
UPF1-211ENST00000600868 DNAI2Q9GZS0 605 aa15.31■□□□□ 0.04
UPF1-211ENST00000600868 ZBP1Q9H171 429 aa15.31■□□□□ 0.04
UPF1-211ENST00000600868 ALG13Q9NP73 1137 aaKnown RBP15.31■□□□□ 0.04
UPF1-211ENST00000600868 AIPL1Q9NZN9 384 aa15.31■□□□□ 0.04
UPF1-211ENST00000600868 MTUS1Q9ULD2 1270 aa15.31■□□□□ 0.04
UPF1-211ENST00000600868 PLXNA4Q9HCM2 1894 aa15.31■□□□□ 0.04
UPF1-211ENST00000600868 LRRC53A6NM62 1247 aa15.3■□□□□ 0.04
UPF1-211ENST00000600868 A8MXQ7 604 aa15.3■□□□□ 0.04
UPF1-211ENST00000600868 GOLGA6L6A8MZA4 724 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms