RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 YAF2Q8IY57 180 aa14.72□□□□□ -0.05
TRIM28-211ENST00000597968 FAM212AQ96EL1 285 aa14.72□□□□□ -0.05
TRIM28-211ENST00000597968 INTS4Q96HW7 963 aaKnown RBP14.72□□□□□ -0.05
TRIM28-211ENST00000597968 ZNF560Q96MR9 790 aa14.72□□□□□ -0.05
TRIM28-211ENST00000597968 PGLYRP2Q96PD5 576 aa14.72□□□□□ -0.05
TRIM28-211ENST00000597968 ZCWPW1Q9H0M4 648 aa14.72□□□□□ -0.05
TRIM28-211ENST00000597968 DPP3Q9NY33 737 aa14.72□□□□□ -0.05
TRIM28-211ENST00000597968 PCDHB13Q9Y5F0 798 aa14.72□□□□□ -0.05
TRIM28-211ENST00000597968 PIAS3Q9Y6X2 628 aa14.72□□□□□ -0.05
TRIM28-211ENST00000597968 ZNF292O60281 2723 aa14.72□□□□□ -0.05
TRIM28-211ENST00000597968 GVINP1Q7Z2Y8 2422 aa14.71□□□□□ -0.05
TRIM28-211ENST00000597968 A0A1W2PRU2 124 aa14.71□□□□□ -0.05
TRIM28-211ENST00000597968 KIAA0391O15091 583 aaKnown RBP14.71□□□□□ -0.05
TRIM28-211ENST00000597968 PAPSS2O95340 614 aaPredicted RBP14.71□□□□□ -0.05
TRIM28-211ENST00000597968 NFICP08651 508 aa14.71□□□□□ -0.05
TRIM28-211ENST00000597968 OR4Q2P0C623 313 aa14.71□□□□□ -0.05
TRIM28-211ENST00000597968 GARTP22102 1010 aa14.71□□□□□ -0.05
TRIM28-211ENST00000597968 DDX6P26196 483 aaKnown RBP eCLIP14.71□□□□□ -0.05
TRIM28-211ENST00000597968 GRM2Q14416 872 aa14.71□□□□□ -0.05
TRIM28-211ENST00000597968 PUM1Q14671 1186 aaKnown RBP eCLIP14.71□□□□□ -0.05
TRIM28-211ENST00000597968 RRAGBQ5VZM2 374 aa14.71□□□□□ -0.05
TRIM28-211ENST00000597968 RALGPS2Q86X27 583 aaPredicted RBP14.71□□□□□ -0.05
TRIM28-211ENST00000597968 DCP1BQ8IZD4 617 aaKnown RBP14.71□□□□□ -0.05
TRIM28-211ENST00000597968 SYNPOQ8N3V7 929 aa14.71□□□□□ -0.05
TRIM28-211ENST00000597968 CACTINQ8WUQ7 758 aaKnown RBP14.71□□□□□ -0.05
TRIM28-211ENST00000597968 POMGNT1Q8WZA1 660 aa14.71□□□□□ -0.05
TRIM28-211ENST00000597968 GCNAQ96QF7 691 aa14.71□□□□□ -0.05
TRIM28-211ENST00000597968 ACCSQ96QU6 501 aa14.71□□□□□ -0.05
TRIM28-211ENST00000597968 CRISPLD1Q9H336 500 aa14.71□□□□□ -0.05
TRIM28-211ENST00000597968 ZSCAN16Q9H4T2 348 aaPredicted RBP14.71□□□□□ -0.05
TRIM28-211ENST00000597968 MRPL44Q9H9J2 332 aaKnown RBP14.71□□□□□ -0.05
TRIM28-211ENST00000597968 FBXO2Q9UK22 296 aaPredicted RBP14.71□□□□□ -0.05
TRIM28-211ENST00000597968 PATJQ8NI35 1801 aa14.71□□□□□ -0.06
TRIM28-211ENST00000597968 DMXL1Q9Y485 3027 aa14.71□□□□□ -0.06
TRIM28-211ENST00000597968 VPS37CA5D8V6 355 aaPredicted RBP14.7□□□□□ -0.06
TRIM28-211ENST00000597968 KPNA7A9QM74 516 aa14.7□□□□□ -0.06
TRIM28-211ENST00000597968 ANKRD63C9JTQ0 380 aa14.7□□□□□ -0.06
TRIM28-211ENST00000597968 DPYSL4O14531 572 aa14.7□□□□□ -0.06
TRIM28-211ENST00000597968 CYB561D2O14569 222 aa14.7□□□□□ -0.06
TRIM28-211ENST00000597968 PDIA4P13667 645 aaKnown RBP14.7□□□□□ -0.06
TRIM28-211ENST00000597968 CNR2P34972 360 aa14.7□□□□□ -0.06
TRIM28-211ENST00000597968 VIPR2P41587 438 aa14.7□□□□□ -0.06
TRIM28-211ENST00000597968 ACOT2P49753 483 aa14.7□□□□□ -0.06
TRIM28-211ENST00000597968 GRIN1Q05586 938 aa14.7□□□□□ -0.06
TRIM28-211ENST00000597968 MTAPQ13126 283 aa14.7□□□□□ -0.06
TRIM28-211ENST00000597968 NFE2Q16621 373 aaPredicted RBP14.7□□□□□ -0.06
TRIM28-211ENST00000597968 ZC2HC1CQ53FD0 456 aaPredicted RBP14.7□□□□□ -0.06
TRIM28-211ENST00000597968 DGKKQ5KSL6 1271 aa14.7□□□□□ -0.06
TRIM28-211ENST00000597968 L1TD1Q5T7N2 865 aaKnown RBP14.7□□□□□ -0.06
TRIM28-211ENST00000597968 ARID3BQ8IVW6 561 aaPredicted RBP14.7□□□□□ -0.06
TRIM28-211ENST00000597968 CELF5Q8N6W0 485 aaKnown RBP14.7□□□□□ -0.06
TRIM28-211ENST00000597968 ATAD1Q8NBU5 361 aa14.7□□□□□ -0.06
TRIM28-211ENST00000597968 LEO1Q8WVC0 666 aaPredicted RBP14.7□□□□□ -0.06
TRIM28-211ENST00000597968 EPSTI1Q96J88 318 aa14.7□□□□□ -0.06
TRIM28-211ENST00000597968 HINFPQ9BQA5 517 aa14.7□□□□□ -0.06
TRIM28-211ENST00000597968 LRRC27Q9C0I9 530 aa14.7□□□□□ -0.06
TRIM28-211ENST00000597968 ATXN3LQ9H3M9 355 aa14.7□□□□□ -0.06
TRIM28-211ENST00000597968 TASP1Q9H6P5 420 aa14.7□□□□□ -0.06
TRIM28-211ENST00000597968 TMEM206Q9H813 350 aa14.7□□□□□ -0.06
TRIM28-211ENST00000597968 DNAH14Q0VDD8 3507 aa14.7□□□□□ -0.06
TRIM28-211ENST00000597968 FRMD3A2A2Y4 597 aa14.69□□□□□ -0.06
TRIM28-211ENST00000597968 MYBPHLA2RUH7 354 aa14.69□□□□□ -0.06
TRIM28-211ENST00000597968 PPEF2O14830 753 aa14.69□□□□□ -0.06
TRIM28-211ENST00000597968 CHRNB1P11230 501 aa14.69□□□□□ -0.06
TRIM28-211ENST00000597968 GABRR2P28476 465 aa14.69□□□□□ -0.06
TRIM28-211ENST00000597968 ADSSP30520 456 aa14.69□□□□□ -0.06
TRIM28-211ENST00000597968 GUCY2FP51841 1108 aa14.69□□□□□ -0.06
TRIM28-211ENST00000597968 SLC39A12Q504Y0 691 aa14.69□□□□□ -0.06
TRIM28-211ENST00000597968 CRELD2Q6UXH1 353 aaPredicted RBP14.69□□□□□ -0.06
TRIM28-211ENST00000597968 GAREM2Q75VX8 874 aa14.69□□□□□ -0.06
TRIM28-211ENST00000597968 SFR1Q86XK3 245 aa14.69□□□□□ -0.06
TRIM28-211ENST00000597968 TMEM86AQ8N2M4 240 aa14.69□□□□□ -0.06
TRIM28-211ENST00000597968 SPEM1Q8N4L4 309 aa14.69□□□□□ -0.06
TRIM28-211ENST00000597968 LRRC52Q8N7C0 313 aa14.69□□□□□ -0.06
TRIM28-211ENST00000597968 OR10T2Q8NGX3 314 aa14.69□□□□□ -0.06
TRIM28-211ENST00000597968 DNAJC19Q96DA6 116 aa14.69□□□□□ -0.06
TRIM28-211ENST00000597968 MKNK1Q9BUB5 465 aa14.69□□□□□ -0.06
TRIM28-211ENST00000597968 LMAN1LQ9HAT1 526 aa14.69□□□□□ -0.06
TRIM28-211ENST00000597968 ABCB6Q9NP58 842 aa14.69□□□□□ -0.06
TRIM28-211ENST00000597968 THG1LQ9NWX6 298 aaKnown RBP14.69□□□□□ -0.06
TRIM28-211ENST00000597968 DLL3Q9NYJ7 618 aa14.69□□□□□ -0.06
TRIM28-211ENST00000597968 NCDNQ9UBB6 729 aa14.69□□□□□ -0.06
TRIM28-211ENST00000597968 SLC27A5Q9Y2P5 690 aa14.69□□□□□ -0.06
TRIM28-211ENST00000597968 CLIC4Q9Y696 253 aa14.69□□□□□ -0.06
TRIM28-211ENST00000597968 WDR87Q6ZQQ6 2873 aa14.69□□□□□ -0.06
TRIM28-211ENST00000597968 CACNA1IQ9P0X4 2223 aa14.68□□□□□ -0.06
TRIM28-211ENST00000597968 PRR5-ARHGAP8B1AHC4 643 aa14.68□□□□□ -0.06
TRIM28-211ENST00000597968 LRP3O75074 770 aa14.68□□□□□ -0.06
TRIM28-211ENST00000597968 TDGF1P13385 188 aa14.68□□□□□ -0.06
TRIM28-211ENST00000597968 GJA1P17302 382 aa14.68□□□□□ -0.06
TRIM28-211ENST00000597968 SYT1P21579 422 aa14.68□□□□□ -0.06
TRIM28-211ENST00000597968 CXCL12P48061 93 aa14.68□□□□□ -0.06
TRIM28-211ENST00000597968 ARHGAP8P85298 464 aa14.68□□□□□ -0.06
TRIM28-211ENST00000597968 TSPY1Q01534 308 aa14.68□□□□□ -0.06
TRIM28-211ENST00000597968 SLC39A14Q15043 492 aa14.68□□□□□ -0.06
TRIM28-211ENST00000597968 TAF12Q16514 161 aa14.68□□□□□ -0.06
TRIM28-211ENST00000597968 MGAT5BQ3V5L5 792 aa14.68□□□□□ -0.06
TRIM28-211ENST00000597968 STXBP4Q6ZWJ1 553 aa14.68□□□□□ -0.06
TRIM28-211ENST00000597968 DYMQ7RTS9 669 aa14.68□□□□□ -0.06
TRIM28-211ENST00000597968 BRSK2Q8IWQ3 736 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms