RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 ASB16Q96NS5 453 aa11.34□□□□□ -0.59
LIG1-213ENST00000596672 ACCSQ96QU6 501 aa11.34□□□□□ -0.59
LIG1-213ENST00000596672 PKMYT1Q99640 499 aa11.34□□□□□ -0.59
LIG1-213ENST00000596672 LPIN3Q9BQK8 851 aa11.34□□□□□ -0.59
LIG1-213ENST00000596672 ZCWPW1Q9H0M4 648 aa11.34□□□□□ -0.59
LIG1-213ENST00000596672 BLZF1Q9H2G9 400 aa11.34□□□□□ -0.59
LIG1-213ENST00000596672 IL21Q9HBE4 155 aa11.34□□□□□ -0.59
LIG1-213ENST00000596672 SEL1LQ9UBV2 794 aa11.34□□□□□ -0.59
LIG1-213ENST00000596672 DERAQ9Y315 318 aa11.34□□□□□ -0.59
LIG1-213ENST00000596672 C2CD2Q9Y426 696 aa11.34□□□□□ -0.59
LIG1-213ENST00000596672 ANAPC1Q9H1A4 1944 aa11.34□□□□□ -0.59
LIG1-213ENST00000596672 OR6C75A6NL08 312 aa11.33□□□□□ -0.6
LIG1-213ENST00000596672 ARNTLO00327 626 aa11.33□□□□□ -0.6
LIG1-213ENST00000596672 CYB561D2O14569 222 aa11.33□□□□□ -0.6
LIG1-213ENST00000596672 ECI2O75521 394 aa11.33□□□□□ -0.6
LIG1-213ENST00000596672 YEATS4O95619 227 aa11.33□□□□□ -0.6
LIG1-213ENST00000596672 MYL4P12829 197 aa11.33□□□□□ -0.6
LIG1-213ENST00000596672 SCP2P22307 547 aa11.33□□□□□ -0.6
LIG1-213ENST00000596672 HOXC13P31276 330 aa11.33□□□□□ -0.6
LIG1-213ENST00000596672 ELF1P32519 619 aa11.33□□□□□ -0.6
LIG1-213ENST00000596672 NBL1P41271 181 aa11.33□□□□□ -0.6
LIG1-213ENST00000596672 GPR15P49685 360 aa11.33□□□□□ -0.6
LIG1-213ENST00000596672 NUBP1P53384 320 aa11.33□□□□□ -0.6
LIG1-213ENST00000596672 DNM1Q05193 864 aaKnown RBP11.33□□□□□ -0.6
LIG1-213ENST00000596672 ANGPT1Q15389 498 aa11.33□□□□□ -0.6
LIG1-213ENST00000596672 KYAT1Q16773 422 aa11.33□□□□□ -0.6
LIG1-213ENST00000596672 SLFN12LQ6IEE8 588 aa11.33□□□□□ -0.6
LIG1-213ENST00000596672 CNNM4Q6P4Q7 775 aa11.33□□□□□ -0.6
LIG1-213ENST00000596672 CBWD2Q8IUF1 395 aa11.33□□□□□ -0.6
LIG1-213ENST00000596672 PLEKHO2Q8TD55 490 aa11.33□□□□□ -0.6
LIG1-213ENST00000596672 TSPAN18Q96SJ8 248 aa11.33□□□□□ -0.6
LIG1-213ENST00000596672 PRRX2Q99811 253 aa11.33□□□□□ -0.6
LIG1-213ENST00000596672 PYM1Q9BRP8 204 aaKnown RBP11.33□□□□□ -0.6
LIG1-213ENST00000596672 GDE1Q9NZC3 331 aa11.33□□□□□ -0.6
LIG1-213ENST00000596672 L1RE1Q9UN81 338 aa11.33□□□□□ -0.6
LIG1-213ENST00000596672 NCOR2Q9Y618 2525 aa11.33□□□□□ -0.6
LIG1-213ENST00000596672 PTPRDP23468 1912 aa11.33□□□□□ -0.6
LIG1-213ENST00000596672 NUP210Q8TEM1 1887 aaPredicted RBP11.32□□□□□ -0.6
LIG1-213ENST00000596672 A0A1W2PRU2 124 aa11.32□□□□□ -0.6
LIG1-213ENST00000596672 KLRC4O43908 158 aa11.32□□□□□ -0.6
LIG1-213ENST00000596672 EXTL3O43909 919 aa11.32□□□□□ -0.6
LIG1-213ENST00000596672 CUTAO60888 179 aa11.32□□□□□ -0.6
LIG1-213ENST00000596672 MICAL2O94851 1124 aa11.32□□□□□ -0.6
LIG1-213ENST00000596672 GARTP22102 1010 aa11.32□□□□□ -0.6
LIG1-213ENST00000596672 TARSP26639 723 aaKnown RBP11.32□□□□□ -0.6
LIG1-213ENST00000596672 POLR2BP30876 1174 aaKnown RBP11.32□□□□□ -0.6
LIG1-213ENST00000596672 POU5F1Q01860 360 aaKnown RBP11.32□□□□□ -0.6
LIG1-213ENST00000596672 CUL4BQ13620 913 aa11.32□□□□□ -0.6
LIG1-213ENST00000596672 MYBPC2Q14324 1141 aa11.32□□□□□ -0.6
LIG1-213ENST00000596672 MLF2Q15773 248 aaPredicted RBP11.32□□□□□ -0.6
LIG1-213ENST00000596672 SLC39A12Q504Y0 691 aa11.32□□□□□ -0.6
LIG1-213ENST00000596672 SDHAF4Q5VUM1 108 aa11.32□□□□□ -0.6
LIG1-213ENST00000596672 RESP18Q5W5W9 173 aa11.32□□□□□ -0.6
LIG1-213ENST00000596672 LIMS2Q7Z4I7 341 aa11.32□□□□□ -0.6
LIG1-213ENST00000596672 DNAJB7Q7Z6W7 309 aaPredicted RBP11.32□□□□□ -0.6
LIG1-213ENST00000596672 PDCL2Q8N4E4 241 aa11.32□□□□□ -0.6
LIG1-213ENST00000596672 PJA1Q8NG27 643 aa11.32□□□□□ -0.6
LIG1-213ENST00000596672 RIN3Q8TB24 985 aa11.32□□□□□ -0.6
LIG1-213ENST00000596672 ZNF507Q8TCN5 953 aa11.32□□□□□ -0.6
LIG1-213ENST00000596672 SCFD1Q8WVM8 642 aa11.32□□□□□ -0.6
LIG1-213ENST00000596672 ELSPBP1Q96BH3 223 aa11.32□□□□□ -0.6
LIG1-213ENST00000596672 C7orf25Q9BPX7 421 aa11.32□□□□□ -0.6
LIG1-213ENST00000596672 HEBP1Q9NRV9 189 aa11.32□□□□□ -0.6
LIG1-213ENST00000596672 RCOR1Q9UKL0 485 aa11.32□□□□□ -0.6
LIG1-213ENST00000596672 AGAP1Q9UPQ3 857 aa11.32□□□□□ -0.6
LIG1-213ENST00000596672 ZNF638Q14966 1978 aaKnown RBP11.32□□□□□ -0.6
LIG1-213ENST00000596672 PRR23AA6NEV1 266 aa11.31□□□□□ -0.6
LIG1-213ENST00000596672 KPNA7A9QM74 516 aa11.31□□□□□ -0.6
LIG1-213ENST00000596672 POLR2DO15514 142 aaKnown RBP11.31□□□□□ -0.6
LIG1-213ENST00000596672 GFRA3O60609 400 aa11.31□□□□□ -0.6
LIG1-213ENST00000596672 ITGB3P05106 788 aa11.31□□□□□ -0.6
LIG1-213ENST00000596672 ODC1P11926 461 aa11.31□□□□□ -0.6
LIG1-213ENST00000596672 HMGA1P17096 107 aaKnown RBP11.31□□□□□ -0.6
LIG1-213ENST00000596672 ACAT1P24752 427 aaKnown RBP11.31□□□□□ -0.6
LIG1-213ENST00000596672 TAF6P49848 677 aa11.31□□□□□ -0.6
LIG1-213ENST00000596672 TFAMQ00059 246 aaKnown RBP11.31□□□□□ -0.6
LIG1-213ENST00000596672 MTSS1LQ765P7 747 aa11.31□□□□□ -0.6
LIG1-213ENST00000596672 PDZD4Q76G19 769 aaPredicted RBP11.31□□□□□ -0.6
LIG1-213ENST00000596672 USP37Q86T82 979 aa11.31□□□□□ -0.6
LIG1-213ENST00000596672 ZSCAN18Q8TBC5 510 aaPredicted RBP11.31□□□□□ -0.6
LIG1-213ENST00000596672 GIPC2Q8TF65 315 aa11.31□□□□□ -0.6
LIG1-213ENST00000596672 ZNF516Q92618 1163 aa11.31□□□□□ -0.6
LIG1-213ENST00000596672 SMARCD2Q92925 531 aa11.31□□□□□ -0.6
LIG1-213ENST00000596672 ELMO3Q96BJ8 720 aa11.31□□□□□ -0.6
LIG1-213ENST00000596672 ZNF512Q96ME7 567 aaPredicted RBP11.31□□□□□ -0.6
LIG1-213ENST00000596672 MTMR12Q9C0I1 747 aa11.31□□□□□ -0.6
LIG1-213ENST00000596672 SMG9Q9H0W8 520 aaKnown RBP11.31□□□□□ -0.6
LIG1-213ENST00000596672 TNMDQ9H2S6 317 aa11.31□□□□□ -0.6
LIG1-213ENST00000596672 TRPV4Q9HBA0 871 aa11.31□□□□□ -0.6
LIG1-213ENST00000596672 LTB4R2Q9NPC1 389 aa11.31□□□□□ -0.6
LIG1-213ENST00000596672 RBAKQ9NYW8 714 aaPredicted RBP11.31□□□□□ -0.6
LIG1-213ENST00000596672 MAFFQ9ULX9 164 aa11.31□□□□□ -0.6
LIG1-213ENST00000596672 SIT1Q9Y3P8 196 aa11.31□□□□□ -0.6
LIG1-213ENST00000596672 PCDHB13Q9Y5F0 798 aa11.31□□□□□ -0.6
LIG1-213ENST00000596672 R4GN57 208 aa11.31□□□□□ -0.6
LIG1-213ENST00000596672 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.3□□□□□ -0.6
LIG1-213ENST00000596672 KANSL1LA0AUZ9 987 aa11.3□□□□□ -0.6
LIG1-213ENST00000596672 STK25O00506 426 aa11.3□□□□□ -0.6
LIG1-213ENST00000596672 CLIC2O15247 247 aa11.3□□□□□ -0.6
LIG1-213ENST00000596672 XPOTO43592 962 aaKnown RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms