RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 GDF15Q99988 308 aa11.46□□□□□ -0.57
SS18-213ENST00000579640 MRPL45Q9BRJ2 306 aaKnown RBP11.46□□□□□ -0.57
SS18-213ENST00000579640 NT5C1AQ9BXI3 368 aa11.46□□□□□ -0.57
SS18-213ENST00000579640 UBE2OQ9C0C9 1292 aaKnown RBP11.46□□□□□ -0.57
SS18-213ENST00000579640 SNX25Q9H3E2 840 aa11.46□□□□□ -0.57
SS18-213ENST00000579640 MARCH5Q9NX47 278 aa11.46□□□□□ -0.57
SS18-213ENST00000579640 STK39Q9UEW8 545 aa11.46□□□□□ -0.57
SS18-213ENST00000579640 KIAA1257Q9ULG3 409 aa11.46□□□□□ -0.57
SS18-213ENST00000579640 GABRDO14764 452 aa11.46□□□□□ -0.58
SS18-213ENST00000579640 ITGB1P05556 798 aa11.46□□□□□ -0.58
SS18-213ENST00000579640 CLCN1P35523 988 aa11.46□□□□□ -0.58
SS18-213ENST00000579640 GNL1P36915 607 aaPredicted RBP11.46□□□□□ -0.58
SS18-213ENST00000579640 PDE6CP51160 858 aa11.46□□□□□ -0.58
SS18-213ENST00000579640 MAPK8IP2Q13387 824 aaPredicted RBP11.46□□□□□ -0.58
SS18-213ENST00000579640 TDRD12Q587J7 1177 aaKnown RBP11.46□□□□□ -0.58
SS18-213ENST00000579640 C9orf50Q5SZB4 431 aa11.46□□□□□ -0.58
SS18-213ENST00000579640 HGSNATQ68CP4 663 aa11.46□□□□□ -0.58
SS18-213ENST00000579640 VPS36Q86VN1 386 aa11.46□□□□□ -0.58
SS18-213ENST00000579640 ZNF677Q86XU0 584 aa11.46□□□□□ -0.58
SS18-213ENST00000579640 TMEM139Q8IV31 216 aa11.46□□□□□ -0.58
SS18-213ENST00000579640 COLGALT1Q8NBJ5 622 aa11.46□□□□□ -0.58
SS18-213ENST00000579640 OR6B3Q8NGW1 331 aa11.46□□□□□ -0.58
SS18-213ENST00000579640 HASPINQ8TF76 798 aa11.46□□□□□ -0.58
SS18-213ENST00000579640 KBTBD7Q8WVZ9 684 aa11.46□□□□□ -0.58
SS18-213ENST00000579640 TMEM176AQ96HP8 235 aa11.46□□□□□ -0.58
SS18-213ENST00000579640 HCSTQ9UBK5 93 aa11.46□□□□□ -0.58
SS18-213ENST00000579640 RWDD3Q9Y3V2 267 aa11.46□□□□□ -0.58
SS18-213ENST00000579640 MKI67P46013 3256 aaKnown RBP11.45□□□□□ -0.58
SS18-213ENST00000579640 A8MXQ7 604 aa11.45□□□□□ -0.58
SS18-213ENST00000579640 ARHGAP6O43182 974 aa11.45□□□□□ -0.58
SS18-213ENST00000579640 CYP11B1P15538 503 aa11.45□□□□□ -0.58
SS18-213ENST00000579640 IGFBP6P24592 240 aaPredicted RBP11.45□□□□□ -0.58
SS18-213ENST00000579640 NDST1P52848 882 aa11.45□□□□□ -0.58
SS18-213ENST00000579640 RAD23BP54727 409 aa11.45□□□□□ -0.58
SS18-213ENST00000579640 CCZ1BP86790 482 aa11.45□□□□□ -0.58
SS18-213ENST00000579640 CCZ1P86791 482 aaPredicted RBP11.45□□□□□ -0.58
SS18-213ENST00000579640 MLLT1Q03111 559 aaPredicted RBP11.45□□□□□ -0.58
SS18-213ENST00000579640 SHHQ15465 462 aa11.45□□□□□ -0.58
SS18-213ENST00000579640 WSCD1Q658N2 575 aa11.45□□□□□ -0.58
SS18-213ENST00000579640 FUT10Q6P4F1 479 aa11.45□□□□□ -0.58
SS18-213ENST00000579640 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.45□□□□□ -0.58
SS18-213ENST00000579640 CCDC170Q8IYT3 715 aa11.45□□□□□ -0.58
SS18-213ENST00000579640 SLC39A11Q8N1S5 342 aa11.45□□□□□ -0.58
SS18-213ENST00000579640 EPS8L1Q8TE68 723 aa11.45□□□□□ -0.58
SS18-213ENST00000579640 WHAMMQ8TF30 809 aa11.45□□□□□ -0.58
SS18-213ENST00000579640 CLP1Q92989 425 aaKnown RBP11.45□□□□□ -0.58
SS18-213ENST00000579640 IGSF21Q96ID5 467 aa11.45□□□□□ -0.58
SS18-213ENST00000579640 TNIP3Q96KP6 325 aa11.45□□□□□ -0.58
SS18-213ENST00000579640 HAUS4Q9H6D7 363 aa11.45□□□□□ -0.58
SS18-213ENST00000579640 SPG21Q9NZD8 308 aa11.45□□□□□ -0.58
SS18-213ENST00000579640 ARHGAP20Q9P2F6 1191 aa11.45□□□□□ -0.58
SS18-213ENST00000579640 STXBP5LQ9Y2K9 1186 aa11.45□□□□□ -0.58
SS18-213ENST00000579640 PCDHB12Q9Y5F1 795 aa11.45□□□□□ -0.58
SS18-213ENST00000579640 F8W810 466 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 H0YGN5 161 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 I3L4J1 428 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 SKILP12757 684 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 PCSK1P29120 753 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 GNA15P30679 374 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 BMP8BP34820 402 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 CYLC1P35663 651 aaPredicted RBP11.44□□□□□ -0.58
SS18-213ENST00000579640 STILQ15468 1287 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 SLC47A2Q86VL8 602 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 CRYBG2Q8N1P7 616 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 THEM5Q8N1Q8 247 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 SLC4A11Q8NBS3 891 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 TMEM169Q96HH4 297 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 CCDC42Q96M95 316 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 CHP1Q99653 195 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 ELOVL4Q9GZR5 314 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 DEF6Q9H4E7 631 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 NHEJ1Q9H9Q4 299 aaPredicted RBP11.44□□□□□ -0.58
SS18-213ENST00000579640 TSC2P49815 1807 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 NT5C1B-RDH14C9J2C7 533 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 MED7O43513 233 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 CAPN15O75808 1086 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 OAZ2O95190 189 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 EFEMP2O95967 443 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 VDRP11473 427 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 FGFR3P22607 806 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 CDR2Q01850 454 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 YWHAHQ04917 246 aaPredicted RBP11.44□□□□□ -0.58
SS18-213ENST00000579640 BMS1Q14692 1282 aaKnown RBP11.44□□□□□ -0.58
SS18-213ENST00000579640 ZNF394Q53GI3 561 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 FAM171A1Q5VUB5 890 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 OVOS1Q6IE37 1185 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 OSTM1Q86WC4 334 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 RNF168Q8IYW5 571 aaPredicted RBP11.44□□□□□ -0.58
SS18-213ENST00000579640 TWNKQ96RR1 684 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 AGPAT1Q99943 283 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 ACBD6Q9BR61 282 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 OXCT2Q9BYC2 517 aaPredicted RBP11.44□□□□□ -0.58
SS18-213ENST00000579640 GPR62Q9BZJ7 368 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 KCNF1Q9H3M0 494 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 DDX43Q9NXZ2 648 aaKnown RBP11.44□□□□□ -0.58
SS18-213ENST00000579640 NOCTQ9UK39 431 aaKnown RBP11.44□□□□□ -0.58
SS18-213ENST00000579640 CDH9Q9ULB4 789 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 KIAA1671Q9BY89 1806 aa11.44□□□□□ -0.58
SS18-213ENST00000579640 H7C4K7 107 aa11.43□□□□□ -0.58
SS18-213ENST00000579640 AKR1B10O60218 316 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms