RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 MTMR11A4FU01 709 aa20.93■□□□□ 0.94
SS18-209ENST00000578595 TNNC1P63316 161 aa20.93■□□□□ 0.94
SS18-209ENST00000578595 TWF1Q12792 350 aa20.93■□□□□ 0.94
SS18-209ENST00000578595 DUSP4Q13115 394 aa20.93■□□□□ 0.94
SS18-209ENST00000578595 GPR17Q13304 367 aa20.93■□□□□ 0.94
SS18-209ENST00000578595 CAMK4Q16566 473 aa20.93■□□□□ 0.94
SS18-209ENST00000578595 PABPC1LQ4VXU2 614 aaKnown RBP20.93■□□□□ 0.94
SS18-209ENST00000578595 IQCEQ6IPM2 695 aa20.93■□□□□ 0.94
SS18-209ENST00000578595 KLHL10Q6JEL2 608 aa20.93■□□□□ 0.94
SS18-209ENST00000578595 RTL10Q7L3V2 364 aa20.93■□□□□ 0.94
SS18-209ENST00000578595 PARD3BQ8TEW8 1205 aa20.93■□□□□ 0.94
SS18-209ENST00000578595 EEF2KMTQ96G04 330 aa20.93■□□□□ 0.94
SS18-209ENST00000578595 BORCS6Q96GS4 357 aa20.93■□□□□ 0.94
SS18-209ENST00000578595 IPO9Q96P70 1041 aaKnown RBP20.93■□□□□ 0.94
SS18-209ENST00000578595 SEPT5Q99719 369 aaPredicted RBP20.93■□□□□ 0.94
SS18-209ENST00000578595 CORO1BQ9BR76 489 aa20.93■□□□□ 0.94
SS18-209ENST00000578595 RHOBTB2Q9BYZ6 727 aa20.93■□□□□ 0.94
SS18-209ENST00000578595 DDX43Q9NXZ2 648 aaKnown RBP20.93■□□□□ 0.94
SS18-209ENST00000578595 LIMD1Q9UGP4 676 aa20.93■□□□□ 0.94
SS18-209ENST00000578595 MAN1B1Q9UKM7 699 aa20.93■□□□□ 0.94
SS18-209ENST00000578595 ZNF638Q14966 1978 aaKnown RBP20.93■□□□□ 0.94
SS18-209ENST00000578595 PSMA7O14818 248 aa20.92■□□□□ 0.94
SS18-209ENST00000578595 ACAT1P24752 427 aaKnown RBP20.92■□□□□ 0.94
SS18-209ENST00000578595 AP3M2P53677 418 aa20.92■□□□□ 0.94
SS18-209ENST00000578595 DLG4P78352 724 aa20.92■□□□□ 0.94
SS18-209ENST00000578595 ZNF699Q32M78 642 aa20.92■□□□□ 0.94
SS18-209ENST00000578595 DCP1BQ8IZD4 617 aaKnown RBP20.92■□□□□ 0.94
SS18-209ENST00000578595 TMEM86AQ8N2M4 240 aa20.92■□□□□ 0.94
SS18-209ENST00000578595 TOP6BLQ8N6T0 577 aa20.92■□□□□ 0.94
SS18-209ENST00000578595 CXorf38Q8TB03 319 aa20.92■□□□□ 0.94
SS18-209ENST00000578595 FAM200AQ8TCP9 573 aa20.92■□□□□ 0.94
SS18-209ENST00000578595 PLEKHO2Q8TD55 490 aa20.92■□□□□ 0.94
SS18-209ENST00000578595 ING5Q8WYH8 240 aa20.92■□□□□ 0.94
SS18-209ENST00000578595 GDAP2Q9NXN4 497 aa20.92■□□□□ 0.94
SS18-209ENST00000578595 ABI2Q9NYB9 513 aaPredicted RBP20.92■□□□□ 0.94
SS18-209ENST00000578595 NXF1Q9UBU9 619 aaKnown RBP20.92■□□□□ 0.94
SS18-209ENST00000578595 SLC27A5Q9Y2P5 690 aa20.92■□□□□ 0.94
SS18-209ENST00000578595 FAM86C2PA6NEL3 165 aa20.91■□□□□ 0.94
SS18-209ENST00000578595 CETN3O15182 167 aa20.91■□□□□ 0.94
SS18-209ENST00000578595 AKAP3O75969 853 aa20.91■□□□□ 0.94
SS18-209ENST00000578595 CST3P01034 146 aaPredicted RBP20.91■□□□□ 0.94
SS18-209ENST00000578595 ASGR2P07307 311 aa20.91■□□□□ 0.94
SS18-209ENST00000578595 EPB41P11171 864 aaKnown RBP20.91■□□□□ 0.94
SS18-209ENST00000578595 PSMC2P35998 433 aaKnown RBP20.91■□□□□ 0.94
SS18-209ENST00000578595 ALDH1A3P47895 512 aa20.91■□□□□ 0.94
SS18-209ENST00000578595 VAMP7P51809 220 aa20.91■□□□□ 0.94
SS18-209ENST00000578595 MYL6P60660 151 aa20.91■□□□□ 0.94
SS18-209ENST00000578595 PLD1Q13393 1074 aa20.91■□□□□ 0.94
SS18-209ENST00000578595 EDRF1Q3B7T1 1238 aa20.91■□□□□ 0.94
SS18-209ENST00000578595 WDR72Q3MJ13 1102 aa20.91■□□□□ 0.94
SS18-209ENST00000578595 MGAT5BQ3V5L5 792 aa20.91■□□□□ 0.94
SS18-209ENST00000578595 TDRD10Q5VZ19 366 aaKnown RBP20.91■□□□□ 0.94
SS18-209ENST00000578595 INTS8Q75QN2 995 aaKnown RBP20.91■□□□□ 0.94
SS18-209ENST00000578595 ATAD1Q8NBU5 361 aa20.91■□□□□ 0.94
SS18-209ENST00000578595 ZNF516Q92618 1163 aa20.91■□□□□ 0.94
SS18-209ENST00000578595 SYAP1Q96A49 352 aaPredicted RBP20.91■□□□□ 0.94
SS18-209ENST00000578595 ZNF512Q96ME7 567 aaPredicted RBP20.91■□□□□ 0.94
SS18-209ENST00000578595 MYADMQ96S97 322 aa20.91■□□□□ 0.94
SS18-209ENST00000578595 ZCWPW1Q9H0M4 648 aa20.91■□□□□ 0.94
SS18-209ENST00000578595 DNMT3BQ9UBC3 853 aaKnown RBP20.91■□□□□ 0.94
SS18-209ENST00000578595 MAFFQ9ULX9 164 aa20.91■□□□□ 0.94
SS18-209ENST00000578595 MRPS23Q9Y3D9 190 aaKnown RBP20.91■□□□□ 0.94
SS18-209ENST00000578595 PTPRDP23468 1912 aa20.9■□□□□ 0.94
SS18-209ENST00000578595 TRIM49BA6NDI0 452 aa20.9■□□□□ 0.94
SS18-209ENST00000578595 PI4K2BG5E9Z4 385 aa20.9■□□□□ 0.94
SS18-209ENST00000578595 SOAT2O75908 522 aa20.9■□□□□ 0.94
SS18-209ENST00000578595 TRIM49P0CI25 452 aa20.9■□□□□ 0.94
SS18-209ENST00000578595 TRIM49CP0CI26 452 aa20.9■□□□□ 0.94
SS18-209ENST00000578595 PTPN2P17706 415 aa20.9■□□□□ 0.94
SS18-209ENST00000578595 PIK3CAP42336 1068 aa20.9■□□□□ 0.94
SS18-209ENST00000578595 EPHB3P54753 998 aa20.9■□□□□ 0.94
SS18-209ENST00000578595 NCOA4Q13772 614 aa20.9■□□□□ 0.94
SS18-209ENST00000578595 NFIL3Q16649 462 aa20.9■□□□□ 0.94
SS18-209ENST00000578595 PTPN21Q16825 1174 aa20.9■□□□□ 0.94
SS18-209ENST00000578595 SCARA5Q6ZMJ2 495 aa20.9■□□□□ 0.94
SS18-209ENST00000578595 OSTM1Q86WC4 334 aa20.9■□□□□ 0.94
SS18-209ENST00000578595 ELOA2Q8IYF1 753 aaPredicted RBP20.9■□□□□ 0.94
SS18-209ENST00000578595 ZDHHC14Q8IZN3 488 aa20.9■□□□□ 0.94
SS18-209ENST00000578595 TTC9BQ8N6N2 239 aa20.9■□□□□ 0.94
SS18-209ENST00000578595 SPATA20Q8TB22 786 aa20.9■□□□□ 0.94
SS18-209ENST00000578595 TMC2Q8TDI7 906 aa20.9■□□□□ 0.94
SS18-209ENST00000578595 GBP4Q96PP9 640 aa20.9■□□□□ 0.94
SS18-209ENST00000578595 RTP3Q9BQQ7 232 aa20.9■□□□□ 0.94
SS18-209ENST00000578595 C1QTNF1Q9BXJ1 281 aa20.9■□□□□ 0.94
SS18-209ENST00000578595 GZF1Q9H116 711 aaPredicted RBP20.9■□□□□ 0.94
SS18-209ENST00000578595 SNX25Q9H3E2 840 aa20.9■□□□□ 0.94
SS18-209ENST00000578595 N4BP1O75113 896 aaKnown RBP20.89■□□□□ 0.93
SS18-209ENST00000578595 RHOP08100 348 aa20.89■□□□□ 0.93
SS18-209ENST00000578595 POU2F2P09086 479 aa20.89■□□□□ 0.93
SS18-209ENST00000578595 MYL4P12829 197 aa20.89■□□□□ 0.93
SS18-209ENST00000578595 PCSK1P29120 753 aa20.89■□□□□ 0.93
SS18-209ENST00000578595 LHX1P48742 406 aa20.89■□□□□ 0.93
SS18-209ENST00000578595 SOWAHAQ2M3V2 549 aa20.89■□□□□ 0.93
SS18-209ENST00000578595 ZCWPW2Q504Y3 356 aa20.89■□□□□ 0.93
SS18-209ENST00000578595 CYP4A22Q5TCH4 519 aa20.89■□□□□ 0.93
SS18-209ENST00000578595 TCERG1LQ5VWI1 586 aa20.89■□□□□ 0.93
SS18-209ENST00000578595 CENPPQ6IPU0 288 aa20.89■□□□□ 0.93
SS18-209ENST00000578595 PDZD4Q76G19 769 aaPredicted RBP20.89■□□□□ 0.93
SS18-209ENST00000578595 ADSSL1Q8N142 457 aa20.89■□□□□ 0.93
SS18-209ENST00000578595 CRISPLD1Q9H336 500 aa20.89■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms