RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 CDO1Q16878 200 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 LRRC36Q1X8D7 754 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 NBPF20Q3BBV1 942 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 FAXCQ5TGI0 409 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 MCF2L2Q86YR7 1114 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.26■□□□□ 0.03
VPS35-210ENST00000568784 STK32AQ8WU08 396 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 MAK16Q9BXY0 300 aaKnown RBP15.26■□□□□ 0.03
VPS35-210ENST00000568784 SLC5A4Q9NY91 659 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 SCINQ9Y6U3 715 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 DNALI1O14645 258 aaPredicted RBP15.26■□□□□ 0.03
VPS35-210ENST00000568784 ATP5HO75947 161 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 PTDSS1P48651 473 aaKnown RBP15.26■□□□□ 0.03
VPS35-210ENST00000568784 GPC3P51654 580 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 GALNTL6Q49A17 601 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 BSPRYQ5W0U4 402 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 TXNRD3NBQ6F5E7 133 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 SCYL2Q6P3W7 929 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 CEP128Q6ZU80 1094 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 PDIK1LQ8N165 341 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 NLGN1Q8N2Q7 840 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 PPM1NQ8N819 430 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 LRRN4Q8WUT4 740 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 FAXDC2Q96IV6 333 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 SMG5Q9UPR3 1016 aaKnown RBP15.26■□□□□ 0.03
VPS35-210ENST00000568784 H7C0C1 242 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 RGL2O15211 777 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 ATP5OP48047 213 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 ARL4CP56559 192 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 BIRC2Q13490 618 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 MAMLD1Q13495 774 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 BAATQ14032 418 aaPredicted RBP15.26■□□□□ 0.03
VPS35-210ENST00000568784 MYBPC2Q14324 1141 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 RFWD3Q6PCD5 774 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 RHBDF2Q6PJF5 856 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 EMC1Q8N766 993 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 C12orf50Q8NA57 414 aaPredicted RBP15.26■□□□□ 0.03
VPS35-210ENST00000568784 FBXO36Q8NEA4 188 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 TSSK1BQ9BXA7 367 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 DENND2DQ9H6A0 471 aaPredicted RBP15.26■□□□□ 0.03
VPS35-210ENST00000568784 PARVAQ9NVD7 372 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 SLC17A7Q9P2U7 560 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 MAD1L1Q9Y6D9 718 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 RREB1Q92766 1687 aa15.25■□□□□ 0.03
VPS35-210ENST00000568784 CAPN9O14815 690 aa15.25■□□□□ 0.03
VPS35-210ENST00000568784 ENO1P06733 434 aaKnown RBP15.25■□□□□ 0.03
VPS35-210ENST00000568784 SERPINB3P29508 390 aa15.25■□□□□ 0.03
VPS35-210ENST00000568784 ANKS1BQ7Z6G8 1248 aa15.25■□□□□ 0.03
VPS35-210ENST00000568784 RFWD2Q8NHY2 731 aa15.25■□□□□ 0.03
VPS35-210ENST00000568784 TTC25Q96NG3 672 aa15.25■□□□□ 0.03
VPS35-210ENST00000568784 PAFAH2Q99487 392 aa15.25■□□□□ 0.03
VPS35-210ENST00000568784 ARHGAP42A6NI28 874 aa15.25■□□□□ 0.03
VPS35-210ENST00000568784 NVLO15381 856 aaKnown RBP15.25■□□□□ 0.03
VPS35-210ENST00000568784 MMP14P50281 582 aa15.25■□□□□ 0.03
VPS35-210ENST00000568784 MRPS9P82933 396 aaKnown RBP15.25■□□□□ 0.03
VPS35-210ENST00000568784 NR1H3Q13133 447 aa15.25■□□□□ 0.03
VPS35-210ENST00000568784 ZCCHC9Q8N567 271 aaKnown RBP15.25■□□□□ 0.03
VPS35-210ENST00000568784 CCDC33Q8N5R6 958 aa15.25■□□□□ 0.03
VPS35-210ENST00000568784 FAM71DQ8N9W8 422 aa15.25■□□□□ 0.03
VPS35-210ENST00000568784 ACTL9Q8TC94 416 aa15.25■□□□□ 0.03
VPS35-210ENST00000568784 IP6K2Q9UHH9 426 aa15.25■□□□□ 0.03
VPS35-210ENST00000568784 FEM1BQ9UK73 627 aa15.25■□□□□ 0.03
VPS35-210ENST00000568784 PCDHA10Q9Y5I2 948 aa15.25■□□□□ 0.03
VPS35-210ENST00000568784 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.25■□□□□ 0.03
VPS35-210ENST00000568784 LGR5O75473 907 aa15.25■□□□□ 0.03
VPS35-210ENST00000568784 ATP6V0A1Q93050 837 aa15.25■□□□□ 0.03
VPS35-210ENST00000568784 CYP39A1Q9NYL5 469 aa15.25■□□□□ 0.03
VPS35-210ENST00000568784 STOML1Q9UBI4 398 aa15.25■□□□□ 0.03
VPS35-210ENST00000568784 EDF1O60869 148 aaKnown RBP15.24■□□□□ 0.03
VPS35-210ENST00000568784 KRT36O76013 467 aa15.24■□□□□ 0.03
VPS35-210ENST00000568784 ASMTLO95671 621 aa15.24■□□□□ 0.03
VPS35-210ENST00000568784 UBTFL6P0CB48 400 aaPredicted RBP15.24■□□□□ 0.03
VPS35-210ENST00000568784 BGNP21810 368 aa15.24■□□□□ 0.03
VPS35-210ENST00000568784 PSEN1P49768 467 aa15.24■□□□□ 0.03
VPS35-210ENST00000568784 OTUD4Q01804 1114 aaKnown RBP15.24■□□□□ 0.03
VPS35-210ENST00000568784 KLC1Q07866 573 aa15.24■□□□□ 0.03
VPS35-210ENST00000568784 CUL2Q13617 745 aa15.24■□□□□ 0.03
VPS35-210ENST00000568784 ZBTB41Q5SVQ8 909 aa15.24■□□□□ 0.03
VPS35-210ENST00000568784 C6orf163Q5TEZ5 329 aa15.24■□□□□ 0.03
VPS35-210ENST00000568784 ANO5Q75V66 913 aa15.24■□□□□ 0.03
VPS35-210ENST00000568784 EEPD1Q7L9B9 569 aa15.24■□□□□ 0.03
VPS35-210ENST00000568784 KCTD6Q8NC69 237 aa15.24■□□□□ 0.03
VPS35-210ENST00000568784 SYTL5Q8TDW5 730 aaPredicted RBP15.24■□□□□ 0.03
VPS35-210ENST00000568784 UTP4Q969X6 686 aaKnown RBP15.24■□□□□ 0.03
VPS35-210ENST00000568784 HERC5Q9UII4 1024 aaKnown RBP15.24■□□□□ 0.03
VPS35-210ENST00000568784 ATP8B3O60423 1300 aa15.24■□□□□ 0.03
VPS35-210ENST00000568784 ADGRA3Q8IWK6 1321 aa15.24■□□□□ 0.03
VPS35-210ENST00000568784 I3L4J1 428 aa15.24■□□□□ 0.03
VPS35-210ENST00000568784 CCNE2O96020 404 aa15.24■□□□□ 0.03
VPS35-210ENST00000568784 OAS1P00973 400 aaKnown RBP15.24■□□□□ 0.03
VPS35-210ENST00000568784 KPNB1Q14974 876 aaKnown RBP15.24■□□□□ 0.03
VPS35-210ENST00000568784 THNSL1Q8IYQ7 743 aa15.24■□□□□ 0.03
VPS35-210ENST00000568784 ATP11CQ8NB49 1132 aa15.24■□□□□ 0.03
VPS35-210ENST00000568784 VCXQ9H320 206 aa15.24■□□□□ 0.03
VPS35-210ENST00000568784 MANSC1Q9H8J5 431 aa15.24■□□□□ 0.03
VPS35-210ENST00000568784 MTA2O94776 668 aa15.24■□□□□ 0.03
VPS35-210ENST00000568784 RFC5P40937 340 aa15.24■□□□□ 0.03
VPS35-210ENST00000568784 TMPRSS15P98073 1019 aa15.24■□□□□ 0.03
VPS35-210ENST00000568784 PRKG1Q13976 671 aa15.24■□□□□ 0.03
VPS35-210ENST00000568784 MAPK6Q16659 721 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms