RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 CPA6Q8N4T0 437 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 PRPF38AQ8NAV1 312 aaKnown RBP3.76□□□□□ -1.81
VPS35-207ENST00000568191 MYCBPAPQ8TBZ2 947 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 POC1BQ8TC44 478 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 HASPINQ8TF76 798 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 ATRIPQ8WXE1 791 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 FKBP10Q96AY3 582 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 PBKQ96KB5 322 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 SLC29A3Q9BZD2 475 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 CCDC8Q9H0W5 538 aaPredicted RBP3.76□□□□□ -1.81
VPS35-207ENST00000568191 ALG13Q9NP73 1137 aaKnown RBP3.76□□□□□ -1.81
VPS35-207ENST00000568191 EHD3Q9NZN3 535 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 ZDHHC8Q9ULC8 765 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 PADI4Q9UM07 663 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 SLC45A2Q9UMX9 530 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 FRMD4BQ9Y2L6 1034 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 PCDHGA9Q9Y5G4 932 aaKnown RBP3.76□□□□□ -1.81
VPS35-207ENST00000568191 PCDHGA8Q9Y5G5 932 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 PCDHGA7Q9Y5G6 932 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 PCDHGA6Q9Y5G7 932 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 PCDHGA3Q9Y5H0 932 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 RAD54BQ9Y620 910 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 ADM5C9JUS6 153 aa3.75□□□□□ -1.81
VPS35-207ENST00000568191 RBMXL2O75526 392 aaKnown RBP3.75□□□□□ -1.81
VPS35-207ENST00000568191 CD6P30203 668 aa3.75□□□□□ -1.81
VPS35-207ENST00000568191 ABCG1P45844 678 aa3.75□□□□□ -1.81
VPS35-207ENST00000568191 ZNF135P52742 658 aaPredicted RBP3.75□□□□□ -1.81
VPS35-207ENST00000568191 EXOSC10Q01780 885 aaKnown RBP3.75□□□□□ -1.81
VPS35-207ENST00000568191 TXNRD1Q16881 649 aa3.75□□□□□ -1.81
VPS35-207ENST00000568191 AMOTQ4VCS5 1084 aa3.75□□□□□ -1.81
VPS35-207ENST00000568191 ZNF788Q6ZQV5 615 aa3.75□□□□□ -1.81
VPS35-207ENST00000568191 SRRM1Q8IYB3 904 aaKnown RBP3.75□□□□□ -1.81
VPS35-207ENST00000568191 SMG7Q92540 1137 aaKnown RBP3.75□□□□□ -1.81
VPS35-207ENST00000568191 TNPO1Q92973 898 aaKnown RBP3.75□□□□□ -1.81
VPS35-207ENST00000568191 MTFMTQ96DP5 389 aaKnown RBP3.75□□□□□ -1.81
VPS35-207ENST00000568191 MOGAT1Q96PD6 335 aa3.75□□□□□ -1.81
VPS35-207ENST00000568191 ACTRT3Q9BYD9 372 aa3.75□□□□□ -1.81
VPS35-207ENST00000568191 GPR35Q9HC97 309 aa3.75□□□□□ -1.81
VPS35-207ENST00000568191 ST3GAL5Q9UNP4 418 aa3.75□□□□□ -1.81
VPS35-207ENST00000568191 CADPSQ9ULU8 1353 aa3.75□□□□□ -1.81
VPS35-207ENST00000568191 LINC00473A8K010 186 aa3.74□□□□□ -1.81
VPS35-207ENST00000568191 C1QL1O75973 258 aa3.74□□□□□ -1.81
VPS35-207ENST00000568191 IL33O95760 270 aa3.74□□□□□ -1.81
VPS35-207ENST00000568191 FTLP02792 175 aaPredicted RBP3.74□□□□□ -1.81
VPS35-207ENST00000568191 PRKCGP05129 697 aa3.74□□□□□ -1.81
VPS35-207ENST00000568191 FAM163BP0C2L3 166 aa3.74□□□□□ -1.81
VPS35-207ENST00000568191 NR2F6P10588 404 aa3.74□□□□□ -1.81
VPS35-207ENST00000568191 ZFXP17010 805 aaPredicted RBP3.74□□□□□ -1.81
VPS35-207ENST00000568191 PDCP20941 246 aa3.74□□□□□ -1.81
VPS35-207ENST00000568191 CCT8P50990 548 aa3.74□□□□□ -1.81
VPS35-207ENST00000568191 SLC10A2Q12908 348 aaPredicted RBP3.74□□□□□ -1.81
VPS35-207ENST00000568191 KIF22Q14807 665 aa3.74□□□□□ -1.81
VPS35-207ENST00000568191 SRSF7Q16629 238 aaKnown RBP eCLIP3.74□□□□□ -1.81
VPS35-207ENST00000568191 EPHA10Q5JZY3 1008 aa3.74□□□□□ -1.81
VPS35-207ENST00000568191 FCRLBQ6BAA4 426 aa3.74□□□□□ -1.81
VPS35-207ENST00000568191 ZNF551Q7Z340 670 aaPredicted RBP3.74□□□□□ -1.81
VPS35-207ENST00000568191 PSD4Q8NDX1 1056 aa3.74□□□□□ -1.81
VPS35-207ENST00000568191 RGMAQ96B86 450 aa3.74□□□□□ -1.81
VPS35-207ENST00000568191 FAM136AQ96C01 138 aa3.74□□□□□ -1.81
VPS35-207ENST00000568191 SMAD5Q99717 465 aaKnown RBP3.74□□□□□ -1.81
VPS35-207ENST00000568191 CNNM1Q9NRU3 951 aa3.74□□□□□ -1.81
VPS35-207ENST00000568191 PCDHA3Q9Y5H8 950 aa3.74□□□□□ -1.81
VPS35-207ENST00000568191 KAT6AQ92794 2004 aa3.73□□□□□ -1.81
VPS35-207ENST00000568191 WASHC2CQ9Y4E1 1318 aa3.73□□□□□ -1.81
VPS35-207ENST00000568191 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa3.73□□□□□ -1.81
VPS35-207ENST00000568191 INO80B-WBP1J3KQ70 363 aa3.73□□□□□ -1.81
VPS35-207ENST00000568191 TLR5O60602 858 aa3.73□□□□□ -1.81
VPS35-207ENST00000568191 VPS4BO75351 444 aa3.73□□□□□ -1.81
VPS35-207ENST00000568191 ONECUT2O95948 504 aa3.73□□□□□ -1.81
VPS35-207ENST00000568191 EBLN1P0CF75 366 aa3.73□□□□□ -1.81
VPS35-207ENST00000568191 PRDX5P30044 214 aa3.73□□□□□ -1.81
VPS35-207ENST00000568191 CDKN1CP49918 316 aaPredicted RBP3.73□□□□□ -1.81
VPS35-207ENST00000568191 FXR1P51114 621 aaKnown RBP eCLIP3.73□□□□□ -1.81
VPS35-207ENST00000568191 MC2RQ01718 297 aa3.73□□□□□ -1.81
VPS35-207ENST00000568191 DSC2Q02487 901 aa3.73□□□□□ -1.81
VPS35-207ENST00000568191 NOGQ13253 232 aa3.73□□□□□ -1.81
VPS35-207ENST00000568191 GRM1Q13255 1194 aa3.73□□□□□ -1.81
VPS35-207ENST00000568191 TBCCQ15814 346 aa3.73□□□□□ -1.81
VPS35-207ENST00000568191 EZH2Q15910 746 aaKnown RBP3.73□□□□□ -1.81
VPS35-207ENST00000568191 ZNF618Q5T7W0 954 aa3.73□□□□□ -1.81
VPS35-207ENST00000568191 FAM160B1Q5W0V3 765 aa3.73□□□□□ -1.81
VPS35-207ENST00000568191 TMPRSS9Q7Z410 1059 aa3.73□□□□□ -1.81
VPS35-207ENST00000568191 HEATR3Q7Z4Q2 680 aa3.73□□□□□ -1.81
VPS35-207ENST00000568191 ZNF804AQ7Z570 1209 aa3.73□□□□□ -1.81
VPS35-207ENST00000568191 USP37Q86T82 979 aa3.73□□□□□ -1.81
VPS35-207ENST00000568191 RASAL3Q86YV0 1011 aa3.73□□□□□ -1.81
VPS35-207ENST00000568191 CAMKK1Q8N5S9 505 aa3.73□□□□□ -1.81
VPS35-207ENST00000568191 BRIX1Q8TDN6 353 aaKnown RBP3.73□□□□□ -1.81
VPS35-207ENST00000568191 DMRTA2Q96SC8 542 aa3.73□□□□□ -1.81
VPS35-207ENST00000568191 INO80BQ9C086 356 aaPredicted RBP3.73□□□□□ -1.81
VPS35-207ENST00000568191 AMBRA1Q9C0C7 1298 aa3.73□□□□□ -1.81
VPS35-207ENST00000568191 ARHGEF3Q9NR81 526 aa3.73□□□□□ -1.81
VPS35-207ENST00000568191 LMBRD1Q9NUN5 540 aa3.73□□□□□ -1.81
VPS35-207ENST00000568191 ABCF2Q9UG63 623 aa3.73□□□□□ -1.81
VPS35-207ENST00000568191 TNKSO95271 1327 aa3.72□□□□□ -1.81
VPS35-207ENST00000568191 ADGRA2Q96PE1 1338 aa3.72□□□□□ -1.81
VPS35-207ENST00000568191 NT5C1B-RDH14C9J2C7 533 aa3.72□□□□□ -1.81
VPS35-207ENST00000568191 E9PLN8 166 aa3.72□□□□□ -1.81
VPS35-207ENST00000568191 H3BUI4 141 aa3.72□□□□□ -1.81
VPS35-207ENST00000568191 QSOX1O00391 747 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms