RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 A0A1W2PRU2 124 aa16.1■□□□□ 0.17
CLN3-222ENST00000566083 MYMKA6NI61 221 aa16.1■□□□□ 0.17
CLN3-222ENST00000566083 KPNA7A9QM74 516 aa16.1■□□□□ 0.17
CLN3-222ENST00000566083 DPYSL4O14531 572 aa16.1■□□□□ 0.17
CLN3-222ENST00000566083 PPEF2O14830 753 aa16.1■□□□□ 0.17
CLN3-222ENST00000566083 CHADO15335 359 aa16.1■□□□□ 0.17
CLN3-222ENST00000566083 LRRN2O75325 713 aa16.1■□□□□ 0.17
CLN3-222ENST00000566083 GCNT3O95395 438 aa16.1■□□□□ 0.17
CLN3-222ENST00000566083 VNN2O95498 520 aa16.1■□□□□ 0.17
CLN3-222ENST00000566083 IDEP14735 1019 aa16.1■□□□□ 0.17
CLN3-222ENST00000566083 CD72P21854 359 aa16.1■□□□□ 0.17
CLN3-222ENST00000566083 TARSP26639 723 aaKnown RBP16.1■□□□□ 0.17
CLN3-222ENST00000566083 WEE1P30291 646 aa16.1■□□□□ 0.17
CLN3-222ENST00000566083 CDC25CP30307 473 aa16.1■□□□□ 0.17
CLN3-222ENST00000566083 TMC8Q8IU68 726 aa16.1■□□□□ 0.17
CLN3-222ENST00000566083 SPATA18Q8TC71 538 aa16.1■□□□□ 0.17
CLN3-222ENST00000566083 CSGALNACT1Q8TDX6 532 aa16.1■□□□□ 0.17
CLN3-222ENST00000566083 FAM3CQ92520 227 aa16.1■□□□□ 0.17
CLN3-222ENST00000566083 RUBCNQ92622 972 aa16.1■□□□□ 0.17
CLN3-222ENST00000566083 DNAJC19Q96DA6 116 aa16.1■□□□□ 0.17
CLN3-222ENST00000566083 CLIC6Q96NY7 704 aa16.1■□□□□ 0.17
CLN3-222ENST00000566083 GCNAQ96QF7 691 aa16.1■□□□□ 0.17
CLN3-222ENST00000566083 PYM1Q9BRP8 204 aaKnown RBP16.1■□□□□ 0.17
CLN3-222ENST00000566083 ZCWPW1Q9H0M4 648 aa16.1■□□□□ 0.17
CLN3-222ENST00000566083 DNAJC25Q9H1X3 360 aa16.1■□□□□ 0.17
CLN3-222ENST00000566083 C8orf33Q9H7E9 229 aaPredicted RBP16.1■□□□□ 0.17
CLN3-222ENST00000566083 SLC27A5Q9Y2P5 690 aa16.1■□□□□ 0.17
CLN3-222ENST00000566083 MTF2Q9Y483 593 aaPredicted RBP16.1■□□□□ 0.17
CLN3-222ENST00000566083 FANCMQ8IYD8 2048 aa16.1■□□□□ 0.17
CLN3-222ENST00000566083 CFAP54Q96N23 3096 aa16.09■□□□□ 0.17
CLN3-222ENST00000566083 HEPACAM2A8MVW5 462 aa16.09■□□□□ 0.17
CLN3-222ENST00000566083 STX6O43752 255 aa16.09■□□□□ 0.17
CLN3-222ENST00000566083 ADSSP30520 456 aa16.09■□□□□ 0.17
CLN3-222ENST00000566083 NRLP54845 237 aa16.09■□□□□ 0.17
CLN3-222ENST00000566083 AMPD3Q01432 767 aa16.09■□□□□ 0.17
CLN3-222ENST00000566083 TSPY1Q01534 308 aa16.09■□□□□ 0.17
CLN3-222ENST00000566083 CEBPZQ03701 1054 aaKnown RBP16.09■□□□□ 0.17
CLN3-222ENST00000566083 CSTF1Q05048 431 aaKnown RBP16.09■□□□□ 0.17
CLN3-222ENST00000566083 FCHO2Q0JRZ9 810 aa16.09■□□□□ 0.17
CLN3-222ENST00000566083 NFE2Q16621 373 aaPredicted RBP16.09■□□□□ 0.17
CLN3-222ENST00000566083 SLC39A12Q504Y0 691 aa16.09■□□□□ 0.17
CLN3-222ENST00000566083 POTEHQ6S545 545 aa16.09■□□□□ 0.17
CLN3-222ENST00000566083 CCDC65Q8IXS2 484 aa16.09■□□□□ 0.17
CLN3-222ENST00000566083 MAML2Q8IZL2 1156 aaPredicted RBP16.09■□□□□ 0.17
CLN3-222ENST00000566083 FAM200AQ8TCP9 573 aa16.09■□□□□ 0.17
CLN3-222ENST00000566083 ATXN3LQ9H3M9 355 aa16.09■□□□□ 0.17
CLN3-222ENST00000566083 CUEDC2Q9H467 287 aa16.09■□□□□ 0.17
CLN3-222ENST00000566083 PANK4Q9NVE7 773 aa16.09■□□□□ 0.17
CLN3-222ENST00000566083 ZSCAN32Q9NX65 697 aa16.09■□□□□ 0.17
CLN3-222ENST00000566083 MTMR6Q9Y217 621 aa16.09■□□□□ 0.17
CLN3-222ENST00000566083 R3HCC1Q9Y3T6 440 aaKnown RBP16.09■□□□□ 0.17
CLN3-222ENST00000566083 PIAS3Q9Y6X2 628 aa16.09■□□□□ 0.17
CLN3-222ENST00000566083 SCN1AP35498 2009 aa16.08■□□□□ 0.17
CLN3-222ENST00000566083 GPR179Q6PRD1 2367 aa16.08■□□□□ 0.16
CLN3-222ENST00000566083 FRMD3A2A2Y4 597 aa16.08■□□□□ 0.16
CLN3-222ENST00000566083 SOBPA7XYQ1 873 aa16.08■□□□□ 0.16
CLN3-222ENST00000566083 K7ELQ4 463 aaPredicted RBP16.08■□□□□ 0.16
CLN3-222ENST00000566083 GJA1P17302 382 aa16.08■□□□□ 0.16
CLN3-222ENST00000566083 VIPR2P41587 438 aa16.08■□□□□ 0.16
CLN3-222ENST00000566083 NASPP49321 788 aaPredicted RBP16.08■□□□□ 0.16
CLN3-222ENST00000566083 PLCB2Q00722 1185 aa16.08■□□□□ 0.16
CLN3-222ENST00000566083 MGAT5BQ3V5L5 792 aa16.08■□□□□ 0.16
CLN3-222ENST00000566083 ARHGAP29Q52LW3 1261 aa16.08■□□□□ 0.16
CLN3-222ENST00000566083 CRELD2Q6UXH1 353 aaPredicted RBP16.08■□□□□ 0.16
CLN3-222ENST00000566083 ERMP1Q7Z2K6 904 aa16.08■□□□□ 0.16
CLN3-222ENST00000566083 ARID3BQ8IVW6 561 aaPredicted RBP16.08■□□□□ 0.16
CLN3-222ENST00000566083 BRSK2Q8IWQ3 736 aa16.08■□□□□ 0.16
CLN3-222ENST00000566083 GPR161Q8N6U8 529 aaKnown RBP16.08■□□□□ 0.16
CLN3-222ENST00000566083 LRRC52Q8N7C0 313 aa16.08■□□□□ 0.16
CLN3-222ENST00000566083 OR10T2Q8NGX3 314 aa16.08■□□□□ 0.16
CLN3-222ENST00000566083 SECISBP2LQ93073 1101 aaKnown RBP16.08■□□□□ 0.16
CLN3-222ENST00000566083 ZNF396Q96N95 335 aaPredicted RBP16.08■□□□□ 0.16
CLN3-222ENST00000566083 USP28Q96RU2 1077 aa16.08■□□□□ 0.16
CLN3-222ENST00000566083 SEPT5Q99719 369 aaPredicted RBP16.08■□□□□ 0.16
CLN3-222ENST00000566083 HINFPQ9BQA5 517 aa16.08■□□□□ 0.16
CLN3-222ENST00000566083 FAM213AQ9BRX8 229 aa16.08■□□□□ 0.16
CLN3-222ENST00000566083 CHRDQ9H2X0 955 aa16.08■□□□□ 0.16
CLN3-222ENST00000566083 CRISPLD1Q9H336 500 aa16.08■□□□□ 0.16
CLN3-222ENST00000566083 TISP43B9A030 160 aa16.07■□□□□ 0.16
CLN3-222ENST00000566083 EXTL3O43909 919 aa16.07■□□□□ 0.16
CLN3-222ENST00000566083 GABRR2P28476 465 aa16.07■□□□□ 0.16
CLN3-222ENST00000566083 TFAMQ00059 246 aaKnown RBP16.07■□□□□ 0.16
CLN3-222ENST00000566083 STK38Q15208 465 aa16.07■□□□□ 0.16
CLN3-222ENST00000566083 SURF1Q15526 300 aa16.07■□□□□ 0.16
CLN3-222ENST00000566083 WSCD1Q658N2 575 aa16.07■□□□□ 0.16
CLN3-222ENST00000566083 GAREM2Q75VX8 874 aa16.07■□□□□ 0.16
CLN3-222ENST00000566083 TMEM86AQ8N2M4 240 aa16.07■□□□□ 0.16
CLN3-222ENST00000566083 TMEM130Q8N3G9 435 aa16.07■□□□□ 0.16
CLN3-222ENST00000566083 TNMDQ9H2S6 317 aa16.07■□□□□ 0.16
CLN3-222ENST00000566083 TASP1Q9H6P5 420 aa16.07■□□□□ 0.16
CLN3-222ENST00000566083 PRMT8Q9NR22 394 aaPredicted RBP16.07■□□□□ 0.16
CLN3-222ENST00000566083 THG1LQ9NWX6 298 aaKnown RBP16.07■□□□□ 0.16
CLN3-222ENST00000566083 RBAKQ9NYW8 714 aaPredicted RBP16.07■□□□□ 0.16
CLN3-222ENST00000566083 TBC1D7Q9P0N9 293 aa16.07■□□□□ 0.16
CLN3-222ENST00000566083 ITGA11Q9UKX5 1188 aa16.07■□□□□ 0.16
CLN3-222ENST00000566083 PCDHB5Q9Y5E4 795 aa16.07■□□□□ 0.16
CLN3-222ENST00000566083 MYO15AQ9UKN7 3530 aa16.07■□□□□ 0.16
CLN3-222ENST00000566083 HUS1O60921 280 aa16.06■□□□□ 0.16
CLN3-222ENST00000566083 PPP6R2O75170 966 aa16.06■□□□□ 0.16
CLN3-222ENST00000566083 DDX6P26196 483 aaKnown RBP eCLIP16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms