RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 DDX12PQ92771 950 aa15.17■□□□□ 0.02
LDLR-213ENST00000560502 C18orf25Q96B23 403 aaPredicted RBP15.17■□□□□ 0.02
LDLR-213ENST00000560502 TCEAL4Q96EI5 215 aa15.17■□□□□ 0.02
LDLR-213ENST00000560502 DHTKD1Q96HY7 919 aaPredicted RBP15.17■□□□□ 0.02
LDLR-213ENST00000560502 SUSD3Q96L08 255 aa15.17■□□□□ 0.02
LDLR-213ENST00000560502 HEBP1Q9NRV9 189 aa15.17■□□□□ 0.02
LDLR-213ENST00000560502 SPTBN2O15020 2390 aa15.17■□□□□ 0.02
LDLR-213ENST00000560502 BICDL2A1A5D9 508 aa15.16■□□□□ 0.02
LDLR-213ENST00000560502 FRMD3A2A2Y4 597 aa15.16■□□□□ 0.02
LDLR-213ENST00000560502 PPP1R3GB7ZBB8 358 aa15.16■□□□□ 0.02
LDLR-213ENST00000560502 H7C4K7 107 aa15.16■□□□□ 0.02
LDLR-213ENST00000560502 PRRG1O14668 218 aa15.16■□□□□ 0.02
LDLR-213ENST00000560502 ADCY5O95622 1261 aa15.16■□□□□ 0.02
LDLR-213ENST00000560502 CASP1P29466 404 aa15.16■□□□□ 0.02
LDLR-213ENST00000560502 CSTF1Q05048 431 aaKnown RBP15.16■□□□□ 0.02
LDLR-213ENST00000560502 EHHADHQ08426 723 aa15.16■□□□□ 0.02
LDLR-213ENST00000560502 PUM1Q14671 1186 aaKnown RBP eCLIP15.16■□□□□ 0.02
LDLR-213ENST00000560502 HS1BP3Q53T59 392 aa15.16■□□□□ 0.02
LDLR-213ENST00000560502 FAM78AQ5JUQ0 283 aa15.16■□□□□ 0.02
LDLR-213ENST00000560502 SPATA1Q5VX52 437 aa15.16■□□□□ 0.02
LDLR-213ENST00000560502 RINT1Q6NUQ1 792 aa15.16■□□□□ 0.02
LDLR-213ENST00000560502 ZNF852Q6ZMS4 543 aa15.16■□□□□ 0.02
LDLR-213ENST00000560502 DGLUCYQ7Z3D6 616 aa15.16■□□□□ 0.02
LDLR-213ENST00000560502 GPBP1Q86WP2 473 aa15.16■□□□□ 0.02
LDLR-213ENST00000560502 MRFAP1L1Q96HT8 127 aa15.16■□□□□ 0.02
LDLR-213ENST00000560502 DRC1Q96MC2 740 aa15.16■□□□□ 0.02
LDLR-213ENST00000560502 ACAP3Q96P50 834 aa15.16■□□□□ 0.02
LDLR-213ENST00000560502 HINFPQ9BQA5 517 aa15.16■□□□□ 0.02
LDLR-213ENST00000560502 CORO1BQ9BR76 489 aa15.16■□□□□ 0.02
LDLR-213ENST00000560502 TIPINQ9BVW5 301 aa15.16■□□□□ 0.02
LDLR-213ENST00000560502 EPC1Q9H2F5 836 aa15.16■□□□□ 0.02
LDLR-213ENST00000560502 C17orf75Q9HAS0 396 aa15.16■□□□□ 0.02
LDLR-213ENST00000560502 CYP4F11Q9HBI6 524 aa15.16■□□□□ 0.02
LDLR-213ENST00000560502 KMT5AQ9NQR1 393 aa15.16■□□□□ 0.02
LDLR-213ENST00000560502 ZSCAN32Q9NX65 697 aa15.16■□□□□ 0.02
LDLR-213ENST00000560502 ZNF197O14709 1029 aa15.15■□□□□ 0.02
LDLR-213ENST00000560502 NCAM2O15394 837 aa15.15■□□□□ 0.02
LDLR-213ENST00000560502 MOSPD3O75425 235 aa15.15■□□□□ 0.02
LDLR-213ENST00000560502 ELF1P32519 619 aa15.15■□□□□ 0.02
LDLR-213ENST00000560502 EPHA5P54756 1037 aa15.15■□□□□ 0.02
LDLR-213ENST00000560502 CTXN3Q4LDR2 81 aa15.15■□□□□ 0.02
LDLR-213ENST00000560502 NOC3LQ8WTT2 800 aaKnown RBP15.15■□□□□ 0.02
LDLR-213ENST00000560502 DNAJC19Q96DA6 116 aa15.15■□□□□ 0.02
LDLR-213ENST00000560502 ZBTB45Q96K62 511 aaPredicted RBP15.15■□□□□ 0.02
LDLR-213ENST00000560502 ASB16Q96NS5 453 aa15.15■□□□□ 0.02
LDLR-213ENST00000560502 NTPCRQ9BSD7 190 aaKnown RBP15.15■□□□□ 0.02
LDLR-213ENST00000560502 ZFP14Q9HCL3 533 aa15.15■□□□□ 0.02
LDLR-213ENST00000560502 AFF4Q9UHB7 1163 aaKnown RBP15.15■□□□□ 0.02
LDLR-213ENST00000560502 MAFFQ9ULX9 164 aa15.15■□□□□ 0.02
LDLR-213ENST00000560502 MRPS17Q9Y2R5 130 aaKnown RBP15.15■□□□□ 0.02
LDLR-213ENST00000560502 NUB1Q9Y5A7 615 aa15.15■□□□□ 0.02
LDLR-213ENST00000560502 TSC2P49815 1807 aa15.15■□□□□ 0.02
LDLR-213ENST00000560502 GOLGA6L6A8MZA4 724 aa15.14■□□□□ 0.01
LDLR-213ENST00000560502 SLC16A4O15374 487 aa15.14■□□□□ 0.01
LDLR-213ENST00000560502 CBFA2T2O43439 604 aa15.14■□□□□ 0.01
LDLR-213ENST00000560502 KRT18P05783 430 aaKnown RBP15.14■□□□□ 0.01
LDLR-213ENST00000560502 TPM3P06753 285 aa15.14■□□□□ 0.01
LDLR-213ENST00000560502 TDGF1P13385 188 aa15.14■□□□□ 0.01
LDLR-213ENST00000560502 GAP43P17677 238 aa15.14■□□□□ 0.01
LDLR-213ENST00000560502 GUCY2CP25092 1073 aa15.14■□□□□ 0.01
LDLR-213ENST00000560502 ARPP19P56211 112 aa15.14■□□□□ 0.01
LDLR-213ENST00000560502 SPAG1Q07617 926 aa15.14■□□□□ 0.01
LDLR-213ENST00000560502 ADCY1Q08828 1119 aa15.14■□□□□ 0.01
LDLR-213ENST00000560502 GRM2Q14416 872 aa15.14■□□□□ 0.01
LDLR-213ENST00000560502 DHX8Q14562 1220 aaKnown RBP15.14■□□□□ 0.01
LDLR-213ENST00000560502 NOLC1Q14978 699 aaKnown RBP eCLIP15.14■□□□□ 0.01
LDLR-213ENST00000560502 SLC10A6Q3KNW5 377 aa15.14■□□□□ 0.01
LDLR-213ENST00000560502 ZNF280DQ6N043 979 aa15.14■□□□□ 0.01
LDLR-213ENST00000560502 PDZD4Q76G19 769 aaPredicted RBP15.14■□□□□ 0.01
LDLR-213ENST00000560502 MAP4K3Q8IVH8 894 aa15.14■□□□□ 0.01
LDLR-213ENST00000560502 GUF1Q8N442 669 aaKnown RBP15.14■□□□□ 0.01
LDLR-213ENST00000560502 SPIRE2Q8WWL2 714 aa15.14■□□□□ 0.01
LDLR-213ENST00000560502 TRIM5Q9C035 493 aa15.14■□□□□ 0.01
LDLR-213ENST00000560502 CHRDQ9H2X0 955 aa15.14■□□□□ 0.01
LDLR-213ENST00000560502 TRPV5Q9NQA5 729 aa15.14■□□□□ 0.01
LDLR-213ENST00000560502 CEP72Q9P209 647 aa15.14■□□□□ 0.01
LDLR-213ENST00000560502 SEL1LQ9UBV2 794 aa15.14■□□□□ 0.01
LDLR-213ENST00000560502 TUBGCP4Q9UGJ1 667 aa15.14■□□□□ 0.01
LDLR-213ENST00000560502 ODF2LQ9ULJ1 636 aa15.14■□□□□ 0.01
LDLR-213ENST00000560502 PCDHB8Q9UN66 801 aa15.14■□□□□ 0.01
LDLR-213ENST00000560502 NFE2L3Q9Y4A8 694 aa15.14■□□□□ 0.01
LDLR-213ENST00000560502 TPRP12270 2363 aaKnown RBP15.14■□□□□ 0.01
LDLR-213ENST00000560502 ANK1P16157 1881 aa15.14■□□□□ 0.01
LDLR-213ENST00000560502 NUP210Q8TEM1 1887 aaPredicted RBP15.14■□□□□ 0.01
LDLR-213ENST00000560502 NCANO14594 1321 aa15.14■□□□□ 0.01
LDLR-213ENST00000560502 TOM1L1O75674 476 aa15.13■□□□□ 0.01
LDLR-213ENST00000560502 VNN2O95498 520 aa15.13■□□□□ 0.01
LDLR-213ENST00000560502 MAPTP10636 758 aaKnown RBP15.13■□□□□ 0.01
LDLR-213ENST00000560502 HARSP12081 509 aaKnown RBP15.13■□□□□ 0.01
LDLR-213ENST00000560502 IDEP14735 1019 aa15.13■□□□□ 0.01
LDLR-213ENST00000560502 CD44P16070 742 aaKnown RBP15.13■□□□□ 0.01
LDLR-213ENST00000560502 ZNF18P17022 549 aa15.13■□□□□ 0.01
LDLR-213ENST00000560502 PRCPP42785 496 aa15.13■□□□□ 0.01
LDLR-213ENST00000560502 ZNF75DP51815 510 aa15.13■□□□□ 0.01
LDLR-213ENST00000560502 PLCB2Q00722 1185 aa15.13■□□□□ 0.01
LDLR-213ENST00000560502 MTAPQ13126 283 aa15.13■□□□□ 0.01
LDLR-213ENST00000560502 FAM26FQ5R3K3 315 aa15.13■□□□□ 0.01
LDLR-213ENST00000560502 TSSK4Q6SA08 328 aa15.13■□□□□ 0.01
LDLR-213ENST00000560502 VITQ6UXI7 678 aa15.13■□□□□ 0.01
LDLR-213ENST00000560502 ZPBP2Q6X784 338 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms