RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 LACRTQ9GZZ8 138 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 HMGXB4Q9UGU5 601 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 PUF60Q9UHX1 559 aaKnown RBP11.97□□□□□ -0.49
USP3-218ENST00000560202 TRIP11Q15643 1979 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 KIAA0100Q14667 2235 aaKnown RBP11.96□□□□□ -0.49
USP3-218ENST00000560202 TMCO5BA8MYB1 307 aa11.96□□□□□ -0.5
USP3-218ENST00000560202 PJA2O43164 708 aa11.96□□□□□ -0.5
USP3-218ENST00000560202 HUS1O60921 280 aa11.96□□□□□ -0.5
USP3-218ENST00000560202 TACC1O75410 805 aa11.96□□□□□ -0.5
USP3-218ENST00000560202 DDHD2O94830 711 aa11.96□□□□□ -0.5
USP3-218ENST00000560202 PAEPP09466 180 aa11.96□□□□□ -0.5
USP3-218ENST00000560202 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.96□□□□□ -0.5
USP3-218ENST00000560202 DPH6Q7L8W6 267 aa11.96□□□□□ -0.5
USP3-218ENST00000560202 LIMS2Q7Z4I7 341 aa11.96□□□□□ -0.5
USP3-218ENST00000560202 ZNF280BQ86YH2 543 aa11.96□□□□□ -0.5
USP3-218ENST00000560202 NPAS4Q8IUM7 802 aa11.96□□□□□ -0.5
USP3-218ENST00000560202 TOP6BLQ8N6T0 577 aa11.96□□□□□ -0.5
USP3-218ENST00000560202 SLC4A11Q8NBS3 891 aa11.96□□□□□ -0.5
USP3-218ENST00000560202 C3orf58Q8NDZ4 430 aa11.96□□□□□ -0.5
USP3-218ENST00000560202 APPL2Q8NEU8 664 aa11.96□□□□□ -0.5
USP3-218ENST00000560202 ZNF606Q8WXB4 792 aa11.96□□□□□ -0.5
USP3-218ENST00000560202 TMEM176AQ96HP8 235 aa11.96□□□□□ -0.5
USP3-218ENST00000560202 CASD1Q96PB1 797 aa11.96□□□□□ -0.5
USP3-218ENST00000560202 PACSIN1Q9BY11 444 aa11.96□□□□□ -0.5
USP3-218ENST00000560202 TSGA10Q9BZW7 698 aa11.96□□□□□ -0.5
USP3-218ENST00000560202 TBC1D13Q9NVG8 400 aa11.96□□□□□ -0.5
USP3-218ENST00000560202 TAS2R14Q9NYV8 317 aa11.96□□□□□ -0.5
USP3-218ENST00000560202 TRIM10Q9UDY6 481 aa11.96□□□□□ -0.5
USP3-218ENST00000560202 L1RE1Q9UN81 338 aa11.96□□□□□ -0.5
USP3-218ENST00000560202 SCN5AQ14524 2016 aa11.95□□□□□ -0.5
USP3-218ENST00000560202 ABHD14A-ACY1A0A1B0GW23 586 aa11.95□□□□□ -0.5
USP3-218ENST00000560202 CYB561D2O14569 222 aa11.95□□□□□ -0.5
USP3-218ENST00000560202 KRT86O43790 486 aa11.95□□□□□ -0.5
USP3-218ENST00000560202 B3GAT3O94766 335 aa11.95□□□□□ -0.5
USP3-218ENST00000560202 H2AFZP0C0S5 128 aa11.95□□□□□ -0.5
USP3-218ENST00000560202 FAM163BP0C2L3 166 aa11.95□□□□□ -0.5
USP3-218ENST00000560202 GZMAP12544 262 aa11.95□□□□□ -0.5
USP3-218ENST00000560202 PAX3P23760 479 aa11.95□□□□□ -0.5
USP3-218ENST00000560202 BRD2P25440 801 aaKnown RBP11.95□□□□□ -0.5
USP3-218ENST00000560202 AARSP49588 968 aaKnown RBP eCLIP11.95□□□□□ -0.5
USP3-218ENST00000560202 GATMP50440 423 aa11.95□□□□□ -0.5
USP3-218ENST00000560202 RNASELQ05823 741 aaKnown RBP11.95□□□□□ -0.5
USP3-218ENST00000560202 DSC1Q08554 894 aa11.95□□□□□ -0.5
USP3-218ENST00000560202 ORC1Q13415 861 aa11.95□□□□□ -0.5
USP3-218ENST00000560202 DCLRE1AQ6PJP8 1040 aa11.95□□□□□ -0.5
USP3-218ENST00000560202 H2AFVQ71UI9 128 aa11.95□□□□□ -0.5
USP3-218ENST00000560202 UNC93AQ86WB7 457 aa11.95□□□□□ -0.5
USP3-218ENST00000560202 DNAAF5Q86Y56 855 aa11.95□□□□□ -0.5
USP3-218ENST00000560202 OR6B3Q8NGW1 331 aa11.95□□□□□ -0.5
USP3-218ENST00000560202 KBTBD7Q8WVZ9 684 aa11.95□□□□□ -0.5
USP3-218ENST00000560202 TFAP2BQ92481 460 aa11.95□□□□□ -0.5
USP3-218ENST00000560202 SENP8Q96LD8 212 aa11.95□□□□□ -0.5
USP3-218ENST00000560202 FAM193BQ96PV7 902 aaPredicted RBP11.95□□□□□ -0.5
USP3-218ENST00000560202 ZSWIM1Q9BR11 485 aa11.95□□□□□ -0.5
USP3-218ENST00000560202 NT5C1AQ9BXI3 368 aa11.95□□□□□ -0.5
USP3-218ENST00000560202 ISCUQ9H1K1 167 aa11.95□□□□□ -0.5
USP3-218ENST00000560202 INTUQ9ULD6 942 aa11.95□□□□□ -0.5
USP3-218ENST00000560202 ATP8B3O60423 1300 aa11.95□□□□□ -0.5
USP3-218ENST00000560202 B4GALT3O60512 393 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 RTN2O75298 545 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 FTLP02792 175 aaPredicted RBP11.94□□□□□ -0.5
USP3-218ENST00000560202 PFKMP08237 780 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 CFHP08603 1231 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 CD19P15391 556 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 GNL1P36915 607 aaPredicted RBP11.94□□□□□ -0.5
USP3-218ENST00000560202 GALCP54803 685 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 CLEC16AQ2KHT3 1053 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 CD300LGQ6UXG3 332 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 DSTYKQ6XUX3 929 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 TRIM72Q6ZMU5 477 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 COLGALT2Q8IYK4 626 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 ADGRF2Q8IZF7 708 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 RSPH1Q8WYR4 309 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 HEXIM2Q96MH2 286 aaKnown RBP11.94□□□□□ -0.5
USP3-218ENST00000560202 SNX25Q9H3E2 840 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 PRKAG2Q9UGJ0 569 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 KIAA1257Q9ULG3 409 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 GUCA1BQ9UMX6 200 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 NME7Q9Y5B8 376 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 DUSP10Q9Y6W6 482 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 A8MXQ7 604 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 MED7O43513 233 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 KIF5CO60282 957 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 EFCAB14O75071 495 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 UPP2O95045 317 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 TUBB4AP04350 444 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 CYP1A1P04798 512 aaPredicted RBP11.94□□□□□ -0.5
USP3-218ENST00000560202 ACRP10323 421 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 VDRP11473 427 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 UNGP13051 313 aaPredicted RBP11.94□□□□□ -0.5
USP3-218ENST00000560202 TNNT1P13805 278 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 WARSP23381 471 aaKnown RBP11.94□□□□□ -0.5
USP3-218ENST00000560202 SSTR3P32745 418 aaPredicted RBP11.94□□□□□ -0.5
USP3-218ENST00000560202 ETF1P62495 437 aaKnown RBP11.94□□□□□ -0.5
USP3-218ENST00000560202 PAN2Q504Q3 1202 aaKnown RBP11.94□□□□□ -0.5
USP3-218ENST00000560202 TIGD5Q53EQ6 642 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 WSCD1Q658N2 575 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 ACAD10Q6JQN1 1059 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 CYFIP2Q96F07 1278 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 MRPL9Q9BYD2 267 aaKnown RBP11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms