RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 PNMA5Q96PV4 448 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 TUBGCP5Q96RT8 1024 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 ZDHHC7Q9NXF8 308 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 COL20A1Q9P218 1284 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 SH3GLB1Q9Y371 365 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 ATP2A1O14983 1001 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 GYG2O15488 501 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 ZFXP17010 805 aaPredicted RBP11.49□□□□□ -0.57
USP3-206ENST00000558157 RAP1GDS1P52306 607 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 WDR4P57081 412 aaKnown RBP11.49□□□□□ -0.57
USP3-206ENST00000558157 PHEXP78562 749 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 GRM2Q14416 872 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 TMEM119Q4V9L6 283 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 RFWD3Q6PCD5 774 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 SLC30A10Q6XR72 485 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 LBX2Q6XYB7 198 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 NLRP9Q7RTR0 991 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 ZNF554Q86TJ5 538 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 CCDC25Q86WR0 208 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 MCF2L2Q86YR7 1114 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 CCDC105Q8IYK2 499 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 DENND1AQ8TEH3 1009 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 TTC25Q96NG3 672 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 ECSITQ9BQ95 431 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 TEX13BQ9BXU2 312 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 AAASQ9NRG9 546 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 TBCCD1Q9NVR7 557 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 EURLQ9NYK6 297 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 BTBD7Q9P203 1132 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 DDX25Q9UHL0 483 aaKnown RBP11.49□□□□□ -0.57
USP3-206ENST00000558157 BIRC5O15392 142 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 HNRNPRO43390 633 aaKnown RBP11.48□□□□□ -0.57
USP3-206ENST00000558157 ABHD2P08910 425 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 TROVE2P10155 538 aaKnown RBP eCLIP11.48□□□□□ -0.57
USP3-206ENST00000558157 MAN1A1P33908 653 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 COPB2P35606 906 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 STAT1P42224 750 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 PSMD7P51665 324 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 HUNKP57058 714 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 UBXN2AP68543 259 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 GHRHRQ02643 423 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 DNAJC3Q13217 504 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 KRT72Q14CN4 511 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 CALCRLQ16602 461 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 TTC27Q6P3X3 843 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 ADAT2Q7Z6V5 191 aaKnown RBP11.48□□□□□ -0.57
USP3-206ENST00000558157 CCDC65Q8IXS2 484 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 SRRM1Q8IYB3 904 aaKnown RBP11.48□□□□□ -0.57
USP3-206ENST00000558157 ALG3Q92685 438 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 HAUS1Q96CS2 278 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 DGCR14Q96DF8 476 aaKnown RBP11.48□□□□□ -0.57
USP3-206ENST00000558157 PTCD3Q96EY7 689 aaKnown RBP11.48□□□□□ -0.57
USP3-206ENST00000558157 NSL1Q96IY1 281 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 MS4A4AQ96JQ5 239 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 KCTD10Q9H3F6 313 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 LRRC19Q9H756 370 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 OSGEPQ9NPF4 335 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 HSFX1Q9UBD0 423 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 NAALADL1Q9UQQ1 740 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 CCL15-CCL14A0A0B4J2E2 113 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 ANKRD62A6NC57 917 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 DNAJC6O75061 913 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 E2F6O75461 281 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 ZCCHC18P0CG32 403 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 STAT3P40763 770 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 GTF2A2P52657 109 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 XIAPP98170 497 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 LRRC41Q15345 812 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 CCL15Q16663 113 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 KYNUQ16719 465 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 SPRYD7Q5W111 196 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 NSMFQ6X4W1 530 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 SEPT14Q6ZU15 432 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 ADGRG6Q86SQ4 1221 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 VPS52Q8N1B4 723 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 WDR60Q8WVS4 1066 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 DNAJC19Q96DA6 116 aa11.48□□□□□ -0.57
USP3-206ENST00000558157 NAP1L4Q99733 375 aaKnown RBP11.48□□□□□ -0.57
USP3-206ENST00000558157 LCTP09848 1927 aa11.47□□□□□ -0.57
USP3-206ENST00000558157 RASA4BC9J798 803 aa11.47□□□□□ -0.57
USP3-206ENST00000558157 RASA4O43374 803 aa11.47□□□□□ -0.57
USP3-206ENST00000558157 THAP12O43422 761 aa11.47□□□□□ -0.57
USP3-206ENST00000558157 SLC26A4O43511 780 aa11.47□□□□□ -0.57
USP3-206ENST00000558157 EXOC3O60645 756 aa11.47□□□□□ -0.57
USP3-206ENST00000558157 MAGEC1O60732 1142 aa11.47□□□□□ -0.57
USP3-206ENST00000558157 CNMDO75829 334 aa11.47□□□□□ -0.57
USP3-206ENST00000558157 CETPP11597 493 aa11.47□□□□□ -0.57
USP3-206ENST00000558157 SLC9A1P19634 815 aa11.47□□□□□ -0.57
USP3-206ENST00000558157 OSBPP22059 807 aa11.47□□□□□ -0.57
USP3-206ENST00000558157 MAGEA10P43363 369 aaPredicted RBP11.47□□□□□ -0.57
USP3-206ENST00000558157 SERPINB8P50452 374 aa11.47□□□□□ -0.57
USP3-206ENST00000558157 CBX3Q13185 183 aa11.47□□□□□ -0.57
USP3-206ENST00000558157 CYLC2Q14093 348 aaPredicted RBP11.47□□□□□ -0.57
USP3-206ENST00000558157 KRT79Q5XKE5 535 aa11.47□□□□□ -0.57
USP3-206ENST00000558157 FAM91A1Q658Y4 838 aa11.47□□□□□ -0.57
USP3-206ENST00000558157 TDRPQ86YL5 185 aa11.47□□□□□ -0.57
USP3-206ENST00000558157 KBTBD2Q8IY47 623 aa11.47□□□□□ -0.57
USP3-206ENST00000558157 SYTL5Q8TDW5 730 aaPredicted RBP11.47□□□□□ -0.57
USP3-206ENST00000558157 BRI3BPQ8WY22 251 aa11.47□□□□□ -0.57
USP3-206ENST00000558157 MBOAT7Q96N66 472 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms