RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 KRT40Q6A162 431 aa3.66□□□□□ -1.82
TRAV28-201ENST00000557548 FAAH2Q6GMR7 532 aa3.66□□□□□ -1.82
TRAV28-201ENST00000557548 OTUD7BQ6GQQ9 843 aa3.66□□□□□ -1.82
TRAV28-201ENST00000557548 TANGO2Q6ICL3 276 aa3.66□□□□□ -1.82
TRAV28-201ENST00000557548 BORAQ6PGQ7 559 aa3.66□□□□□ -1.82
TRAV28-201ENST00000557548 UBE3BQ7Z3V4 1068 aa3.66□□□□□ -1.82
TRAV28-201ENST00000557548 LRRTM4Q86VH4 590 aa3.66□□□□□ -1.82
TRAV28-201ENST00000557548 HEATR4Q86WZ0 1026 aa3.66□□□□□ -1.82
TRAV28-201ENST00000557548 YAF2Q8IY57 180 aa3.66□□□□□ -1.82
TRAV28-201ENST00000557548 SDR16C5Q8N3Y7 309 aa3.66□□□□□ -1.82
TRAV28-201ENST00000557548 PDILTQ8N807 584 aa3.66□□□□□ -1.82
TRAV28-201ENST00000557548 TTLL6Q8N841 843 aa3.66□□□□□ -1.82
TRAV28-201ENST00000557548 LINC00482Q8N8I6 264 aa3.66□□□□□ -1.82
TRAV28-201ENST00000557548 SIMC1Q8NDZ2 872 aa3.66□□□□□ -1.82
TRAV28-201ENST00000557548 SLC30A5Q8TAD4 765 aa3.66□□□□□ -1.82
TRAV28-201ENST00000557548 IPCEF1Q8WWN9 437 aaPredicted RBP3.66□□□□□ -1.82
TRAV28-201ENST00000557548 SLC7A6OSQ96CW6 309 aaPredicted RBP3.66□□□□□ -1.82
TRAV28-201ENST00000557548 BORCS6Q96GS4 357 aa3.66□□□□□ -1.82
TRAV28-201ENST00000557548 PRPF18Q99633 342 aaKnown RBP3.66□□□□□ -1.82
TRAV28-201ENST00000557548 MRI1Q9BV20 369 aa3.66□□□□□ -1.82
TRAV28-201ENST00000557548 KATNAL1Q9BW62 490 aa3.66□□□□□ -1.82
TRAV28-201ENST00000557548 KCNH6Q9H252 994 aa3.66□□□□□ -1.82
TRAV28-201ENST00000557548 MLXIPQ9HAP2 919 aa3.66□□□□□ -1.82
TRAV28-201ENST00000557548 NECTIN3Q9NQS3 549 aa3.66□□□□□ -1.82
TRAV28-201ENST00000557548 SIRT5Q9NXA8 310 aa3.66□□□□□ -1.82
TRAV28-201ENST00000557548 NCDNQ9UBB6 729 aa3.66□□□□□ -1.82
TRAV28-201ENST00000557548 SRP68Q9UHB9 627 aaKnown RBP3.66□□□□□ -1.82
TRAV28-201ENST00000557548 TBC1D30Q9Y2I9 924 aa3.66□□□□□ -1.82
TRAV28-201ENST00000557548 PAXBP1Q9Y5B6 917 aa3.66□□□□□ -1.82
TRAV28-201ENST00000557548 HMX3A6NHT5 357 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 CXorf49A8MYA2 514 aaPredicted RBP3.65□□□□□ -1.83
TRAV28-201ENST00000557548 M0QYG6 137 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 RAB27BO00194 218 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 NRP1O14786 923 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 TIMM44O43615 452 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 SASH1O94885 1247 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 A1BGP04217 495 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 JUNP05412 331 aaKnown RBP3.65□□□□□ -1.83
TRAV28-201ENST00000557548 IFIT1P09914 478 aaKnown RBP3.65□□□□□ -1.83
TRAV28-201ENST00000557548 VSIG10L2P0DP72 767 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 CAPN3P20807 821 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 IGFBP6P24592 240 aaPredicted RBP3.65□□□□□ -1.83
TRAV28-201ENST00000557548 LIFRP42702 1097 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 ZNF135P52742 658 aaPredicted RBP3.65□□□□□ -1.83
TRAV28-201ENST00000557548 COPAP53621 1224 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 RAP2BP61225 183 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 ATP2C1P98194 919 aaPredicted RBP3.65□□□□□ -1.83
TRAV28-201ENST00000557548 APBA1Q02410 837 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 PTH1RQ03431 593 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 TOMM20Q15388 145 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 CRB2Q5IJ48 1285 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 FAM47AQ5JRC9 791 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 ANKRD45Q5TZF3 282 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 VPS53Q5VIR6 699 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 AGBL4Q5VU57 503 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 ZNF529Q6P280 563 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 KLHL17Q6TDP4 642 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 CRTC1Q6UUV9 634 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 SEM1Q6ZVN7 128 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 ZNF365Q70YC5 407 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 TBC1D1Q86TI0 1168 aaPredicted RBP3.65□□□□□ -1.83
TRAV28-201ENST00000557548 GATAD2AQ86YP4 633 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 C2CD5Q86YS7 1000 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 IGDCC3Q8IVU1 814 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 FTSJ3Q8IY81 847 aaKnown RBP3.65□□□□□ -1.83
TRAV28-201ENST00000557548 CCDC89Q8N998 374 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 ANKRD53Q8N9V6 530 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 OR5M3Q8NGP4 307 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 OR14K1Q8NGZ2 314 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 SLC35B2Q8TB61 432 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 MZB1Q8WU39 189 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 RAPGEF4Q8WZA2 1011 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 SPSB4Q96A44 273 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 SNX27Q96L92 541 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 NELL2Q99435 816 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 PYM1Q9BRP8 204 aaKnown RBP3.65□□□□□ -1.83
TRAV28-201ENST00000557548 NDC1Q9BTX1 674 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 TINAGL1Q9GZM7 467 aaPredicted RBP3.65□□□□□ -1.83
TRAV28-201ENST00000557548 MS4A7Q9GZW8 240 aaPredicted RBP3.65□□□□□ -1.83
TRAV28-201ENST00000557548 OSBPL5Q9H0X9 879 aaPredicted RBP3.65□□□□□ -1.83
TRAV28-201ENST00000557548 PCDHAC1Q9H158 963 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 UNC45AQ9H3U1 944 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 UBN1Q9NPG3 1134 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 RIC8AQ9NPQ8 531 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 HEYLQ9NQ87 328 aaPredicted RBP3.65□□□□□ -1.83
TRAV28-201ENST00000557548 WASH6PQ9NQA3 447 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 RASSF1Q9NS23 344 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 RLIMQ9NVW2 624 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 JKAMPQ9P055 326 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 KIF17Q9P2E2 1029 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 MBD1Q9UIS9 605 aaPredicted RBP3.65□□□□□ -1.83
TRAV28-201ENST00000557548 AGAP1Q9UPQ3 857 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 TMX2Q9Y320 296 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 PLEKHM1Q9Y4G2 1056 aa3.65□□□□□ -1.83
TRAV28-201ENST00000557548 A6NLC8 198 aa3.64□□□□□ -1.83
TRAV28-201ENST00000557548 FCHO1O14526 889 aa3.64□□□□□ -1.83
TRAV28-201ENST00000557548 ZNF500O60304 480 aaPredicted RBP3.64□□□□□ -1.83
TRAV28-201ENST00000557548 USP1O94782 785 aa3.64□□□□□ -1.83
TRAV28-201ENST00000557548 GLI1P08151 1106 aa3.64□□□□□ -1.83
TRAV28-201ENST00000557548 ITGA2BP08514 1039 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms