RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 USP20Q9Y2K6 914 aa13.61□□□□□ -0.23
SHMT2-230ENST00000557427 FREM2Q5SZK8 3169 aa13.6□□□□□ -0.23
SHMT2-230ENST00000557427 C4orf47A7E2U8 309 aa13.6□□□□□ -0.23
SHMT2-230ENST00000557427 NPTXRO95502 500 aa13.6□□□□□ -0.23
SHMT2-230ENST00000557427 ARF4P18085 180 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-230ENST00000557427 AXLP30530 894 aa13.6□□□□□ -0.23
SHMT2-230ENST00000557427 LONP1P36776 959 aaKnown RBP13.6□□□□□ -0.23
SHMT2-230ENST00000557427 MPLP40238 635 aa13.6□□□□□ -0.23
SHMT2-230ENST00000557427 TPM4P67936 248 aa13.6□□□□□ -0.23
SHMT2-230ENST00000557427 PCBP1Q15365 356 aaKnown RBP eCLIP13.6□□□□□ -0.23
SHMT2-230ENST00000557427 AMHR2Q16671 573 aa13.6□□□□□ -0.23
SHMT2-230ENST00000557427 IGSF10Q6WRI0 2623 aa13.6□□□□□ -0.23
SHMT2-230ENST00000557427 CACNA2D4Q7Z3S7 1137 aa13.6□□□□□ -0.23
SHMT2-230ENST00000557427 IFNLR1Q8IU57 520 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-230ENST00000557427 ZBTB8OSQ8IWT0 167 aa13.6□□□□□ -0.23
SHMT2-230ENST00000557427 AOPEPQ8N6M6 819 aa13.6□□□□□ -0.23
SHMT2-230ENST00000557427 MRFAP1L1Q96HT8 127 aa13.6□□□□□ -0.23
SHMT2-230ENST00000557427 IFT74Q96LB3 600 aa13.6□□□□□ -0.23
SHMT2-230ENST00000557427 MMTAG2Q9BU76 263 aaKnown RBP13.6□□□□□ -0.23
SHMT2-230ENST00000557427 TRIM6Q9C030 488 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-230ENST00000557427 TRIM5Q9C035 493 aa13.6□□□□□ -0.23
SHMT2-230ENST00000557427 CXCL16Q9H2A7 254 aa13.6□□□□□ -0.23
SHMT2-230ENST00000557427 PCDHA5Q9Y5H7 936 aa13.6□□□□□ -0.23
SHMT2-230ENST00000557427 ADAMTS20P59510 1910 aa13.6□□□□□ -0.23
SHMT2-230ENST00000557427 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-230ENST00000557427 WDR27A2RRH5 827 aa13.59□□□□□ -0.23
SHMT2-230ENST00000557427 CASTOR2A6NHX0 329 aa13.59□□□□□ -0.23
SHMT2-230ENST00000557427 EXTL3O43909 919 aa13.59□□□□□ -0.23
SHMT2-230ENST00000557427 MOSPD3O75425 235 aa13.59□□□□□ -0.23
SHMT2-230ENST00000557427 RPP40O75818 363 aaKnown RBP13.59□□□□□ -0.23
SHMT2-230ENST00000557427 CAPNS1P04632 268 aa13.59□□□□□ -0.23
SHMT2-230ENST00000557427 SLFN14P0C7P3 912 aa13.59□□□□□ -0.23
SHMT2-230ENST00000557427 PTPN2P17706 415 aa13.59□□□□□ -0.23
SHMT2-230ENST00000557427 GRIK3Q13003 919 aa13.59□□□□□ -0.23
SHMT2-230ENST00000557427 PKN3Q6P5Z2 889 aa13.59□□□□□ -0.23
SHMT2-230ENST00000557427 USP49Q70CQ1 688 aa13.59□□□□□ -0.23
SHMT2-230ENST00000557427 KCNK18Q7Z418 384 aa13.59□□□□□ -0.23
SHMT2-230ENST00000557427 DEPTORQ8TB45 409 aa13.59□□□□□ -0.23
SHMT2-230ENST00000557427 CDK5RAP3Q96JB5 506 aa13.59□□□□□ -0.23
SHMT2-230ENST00000557427 PNMA5Q96PV4 448 aa13.59□□□□□ -0.23
SHMT2-230ENST00000557427 EDEM2Q9BV94 578 aa13.59□□□□□ -0.23
SHMT2-230ENST00000557427 KIFC3Q9BVG8 833 aa13.59□□□□□ -0.23
SHMT2-230ENST00000557427 NFKBIZQ9BYH8 718 aa13.59□□□□□ -0.23
SHMT2-230ENST00000557427 VPS45Q9NRW7 570 aa13.59□□□□□ -0.23
SHMT2-230ENST00000557427 PCDHGA5Q9Y5G8 931 aa13.59□□□□□ -0.23
SHMT2-230ENST00000557427 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.59□□□□□ -0.237e-7■■□□□ 12.7
SHMT2-230ENST00000557427 HELZ2Q9BYK8 2649 aaKnown RBP13.59□□□□□ -0.23
SHMT2-230ENST00000557427 EML5Q05BV3 1969 aa13.58□□□□□ -0.24
SHMT2-230ENST00000557427 A0A1B0GUA9 196 aa13.58□□□□□ -0.24
SHMT2-230ENST00000557427 TTLL13PA6NNM8 815 aa13.58□□□□□ -0.24
SHMT2-230ENST00000557427 SLC38A8A6NNN8 435 aa13.58□□□□□ -0.24
SHMT2-230ENST00000557427 CCDC169A6NNP5 214 aa13.58□□□□□ -0.24
SHMT2-230ENST00000557427 SFI1A8K8P3 1242 aa13.58□□□□□ -0.24
SHMT2-230ENST00000557427 BIN1O00499 593 aa13.58□□□□□ -0.24
SHMT2-230ENST00000557427 MLLT6P55198 1093 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-230ENST00000557427 RAD51AP2Q09MP3 1159 aa13.58□□□□□ -0.24
SHMT2-230ENST00000557427 LRRC32Q14392 662 aa13.58□□□□□ -0.24
SHMT2-230ENST00000557427 CT47A1Q5JQC4 288 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-230ENST00000557427 RINT1Q6NUQ1 792 aa13.58□□□□□ -0.24
SHMT2-230ENST00000557427 KIAA1211LQ6NV74 962 aa13.58□□□□□ -0.24
SHMT2-230ENST00000557427 RTL10Q7L3V2 364 aa13.58□□□□□ -0.24
SHMT2-230ENST00000557427 SPATA20Q8TB22 786 aa13.58□□□□□ -0.24
SHMT2-230ENST00000557427 KIFAP3Q92845 792 aa13.58□□□□□ -0.24
SHMT2-230ENST00000557427 SMARCE1Q969G3 411 aa13.58□□□□□ -0.24
SHMT2-230ENST00000557427 RSPRY1Q96DX4 576 aa13.58□□□□□ -0.24
SHMT2-230ENST00000557427 CCDC51Q96ER9 411 aa13.58□□□□□ -0.24
SHMT2-230ENST00000557427 EPSTI1Q96J88 318 aa13.58□□□□□ -0.24
SHMT2-230ENST00000557427 ZC3H10Q96K80 434 aaKnown RBP13.58□□□□□ -0.24
SHMT2-230ENST00000557427 BBC3Q96PG8 261 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-230ENST00000557427 CORO1BQ9BR76 489 aa13.58□□□□□ -0.24
SHMT2-230ENST00000557427 RUSC1Q9BVN2 902 aa13.58□□□□□ -0.24
SHMT2-230ENST00000557427 C2orf40Q9H1Z8 148 aa13.58□□□□□ -0.24
SHMT2-230ENST00000557427 FZD8Q9H461 694 aa13.58□□□□□ -0.24
SHMT2-230ENST00000557427 PRMT7Q9NVM4 692 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-230ENST00000557427 MTRRQ9UBK8 725 aa13.58□□□□□ -0.24
SHMT2-230ENST00000557427 PARP2Q9UGN5 583 aa13.58□□□□□ -0.24
SHMT2-230ENST00000557427 DACH1Q9UI36 760 aa13.58□□□□□ -0.24
SHMT2-230ENST00000557427 MAN1B1Q9UKM7 699 aa13.58□□□□□ -0.24
SHMT2-230ENST00000557427 CDY1Q9Y6F8 540 aa13.58□□□□□ -0.24
SHMT2-230ENST00000557427 PDCD11Q14690 1871 aaKnown RBP13.58□□□□□ -0.24
SHMT2-230ENST00000557427 A0A087X0B3 334 aa13.57□□□□□ -0.24
SHMT2-230ENST00000557427 ARHGEF37A1IGU5 675 aa13.57□□□□□ -0.24
SHMT2-230ENST00000557427 CYSRT1A8MQ03 144 aa13.57□□□□□ -0.24
SHMT2-230ENST00000557427 ZNF263O14978 683 aa13.57□□□□□ -0.24
SHMT2-230ENST00000557427 HYAL3O43820 417 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-230ENST00000557427 HIP1RO75146 1068 aa13.57□□□□□ -0.24
SHMT2-230ENST00000557427 SMC2O95347 1197 aa13.57□□□□□ -0.24
SHMT2-230ENST00000557427 PRKCBP05771 671 aa13.57□□□□□ -0.24
SHMT2-230ENST00000557427 CEACAM1P13688 526 aa13.57□□□□□ -0.24
SHMT2-230ENST00000557427 FGFR3P22607 806 aa13.57□□□□□ -0.24
SHMT2-230ENST00000557427 TXLNAP40222 546 aa13.57□□□□□ -0.24
SHMT2-230ENST00000557427 UBA7P41226 1012 aa13.57□□□□□ -0.24
SHMT2-230ENST00000557427 NAMPTP43490 491 aa13.57□□□□□ -0.24
SHMT2-230ENST00000557427 PEX3P56589 373 aa13.57□□□□□ -0.24
SHMT2-230ENST00000557427 TUSC3Q13454 348 aa13.57□□□□□ -0.24
SHMT2-230ENST00000557427 PRPF4BQ13523 1007 aaKnown RBP13.57□□□□□ -0.24
SHMT2-230ENST00000557427 CCINQ13939 588 aa13.57□□□□□ -0.24
SHMT2-230ENST00000557427 MORC3Q14149 939 aa13.57□□□□□ -0.24
SHMT2-230ENST00000557427 DHX8Q14562 1220 aaKnown RBP13.57□□□□□ -0.24
SHMT2-230ENST00000557427 NCAPHQ15003 741 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms