RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 FAM81BQ96LP2 452 aa12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 TXNDC16Q9P2K2 825 aa12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 BCORQ6W2J9 1755 aa12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 MYH7BA7E2Y1 1941 aa12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 CST3P01034 146 aaPredicted RBP12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 SLC8A1P32418 973 aa12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 PTGIRP43119 386 aa12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 LMNB2Q03252 620 aa12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 GLIS1Q8NBF1 620 aa12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 ACTL9Q8TC94 416 aa12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 DTX3LQ8TDB6 740 aa12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 CRYGNQ8WXF5 182 aa12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 CISHQ9NSE2 258 aa12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 ZDHHC18Q9NUE0 388 aa12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 PAPPAQ13219 1627 aa12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 FAM47DPA6NHR8 397 aa12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 DHX15O43143 795 aaKnown RBP12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 NUMBP49757 651 aa12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 EIF3EP60228 445 aaKnown RBP12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 OTUD4Q01804 1114 aaKnown RBP12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 CCNYQ8ND76 341 aa12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 AGR3Q8TD06 166 aa12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 ARL2BPQ9Y2Y0 163 aa12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 OATP04181 439 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 APRTP07741 180 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 RBP3P10745 1247 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 RNASELQ05823 741 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 KCTD2Q14681 263 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 FOXR2Q6PJQ5 311 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 NME8Q8N427 588 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 SPATA33Q96N06 139 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 HERPUD2Q9BSE4 406 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 ELP3Q9H9T3 547 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 PHLPP1O60346 1717 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 SHANK3Q9BYB0 1731 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 PRPSAP2O60256 369 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 LDHAP00338 332 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 CTCFP49711 727 aaPredicted RBP12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 PEX5P50542 639 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 TFDP1Q14186 410 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 GLRA4Q5JXX5 417 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 VSIG10LQ86VR7 867 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 SLC9A9Q8IVB4 645 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 RNF169Q8NCN4 708 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 LMO3Q8TAP4 145 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 MORC4Q8TE76 937 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 STMN2Q93045 179 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 CYTH2Q99418 400 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 RAB6BQ9NRW1 208 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 FSTL1Q12841 308 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 TAF11Q15544 211 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 TXNRD3NBQ6F5E7 133 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 CCDC62Q6P9F0 684 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 ENOSF1Q7L5Y1 443 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 ABRAQ8N0Z2 381 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 SPATA18Q8TC71 538 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 KIAA1586Q9HCI6 787 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 HOXC10Q9NYD6 342 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 AGAP1Q9UPQ3 857 aa12.8□□□□□ -0.36
CCDC88C-211ENST00000556726 DOCK2Q92608 1830 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 TOM1L1O75674 476 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 FSBPO95073 299 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 ITGB3P05106 788 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 CXCL8P10145 99 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 MAPTP10636 758 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 SLC1A1P43005 524 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 ARL4CP56559 192 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 C1orf220Q5T0J3 134 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 ZNF516Q92618 1163 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 COPS5Q92905 334 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 PGM2Q96G03 612 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 MRPL4Q9BYD3 311 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 PCYOX1Q9UHG3 505 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 ZNF536O15090 1300 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 ARHGAP42A6NI28 874 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 UPP2O95045 317 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 CBX6O95503 412 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 ZBED1O96006 694 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 CYP1A2P05177 515 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 CALB1P05937 261 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 SUPT20HL2P0C7V6 817 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 GLRA2P23416 452 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 TBXAS1P24557 533 aaPredicted RBP12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 PTGER2P43116 358 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 BAG6P46379 1132 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 MAMLD1Q13495 774 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 TMEM132BQ14DG7 1078 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 EFTUD2Q15029 972 aaKnown RBP eCLIP12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 SUPT20HL1Q3ZLR7 823 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 CNPY4Q8N129 248 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 OR6B3Q8NGW1 331 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 NSMCE1Q8WV22 266 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 SHCBP1LQ9BZQ2 653 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 XPNPEP1Q9NQW7 623 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 XPO7Q9UIA9 1087 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 A0A1W2PPM1 405 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 PDGFRBP09619 1106 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 PDGFRAP16234 1089 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 HSD17B4P51659 736 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 STAT4Q14765 748 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms