RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 UNC93AQ86WB7 457 aa13.04□□□□□ -0.32
DDX55-210ENST00000543016 ADGRF2Q8IZF7 708 aa13.04□□□□□ -0.32
DDX55-210ENST00000543016 PDCL2Q8N4E4 241 aa13.04□□□□□ -0.32
DDX55-210ENST00000543016 ACBD6Q9BR61 282 aa13.04□□□□□ -0.32
DDX55-210ENST00000543016 INTS2Q9H0H0 1204 aaKnown RBP13.04□□□□□ -0.32
DDX55-210ENST00000543016 VPS16Q9H269 839 aa13.04□□□□□ -0.32
DDX55-210ENST00000543016 NSUN3Q9H649 340 aaKnown RBP13.04□□□□□ -0.32
DDX55-210ENST00000543016 L1RE1Q9UN81 338 aa13.04□□□□□ -0.32
DDX55-210ENST00000543016 A0A1B0GTH6 734 aa13.03□□□□□ -0.32
DDX55-210ENST00000543016 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.03□□□□□ -0.32
DDX55-210ENST00000543016 RFXAPO00287 272 aa13.03□□□□□ -0.32
DDX55-210ENST00000543016 PON1P27169 355 aa13.03□□□□□ -0.32
DDX55-210ENST00000543016 GNL1P36915 607 aaPredicted RBP13.03□□□□□ -0.32
DDX55-210ENST00000543016 ASPAP45381 313 aa13.03□□□□□ -0.32
DDX55-210ENST00000543016 FANCCQ00597 558 aa13.03□□□□□ -0.32
DDX55-210ENST00000543016 UBXN1Q04323 297 aa13.03□□□□□ -0.32
DDX55-210ENST00000543016 CUL2Q13617 745 aa13.03□□□□□ -0.32
DDX55-210ENST00000543016 RAB33AQ14088 237 aa13.03□□□□□ -0.32
DDX55-210ENST00000543016 MAPRE1Q15691 268 aaKnown RBP13.03□□□□□ -0.32
DDX55-210ENST00000543016 PLPP4Q5VZY2 271 aa13.03□□□□□ -0.32
DDX55-210ENST00000543016 TPGS2Q68CL5 300 aa13.03□□□□□ -0.32
DDX55-210ENST00000543016 TRIM65Q6PJ69 517 aa13.03□□□□□ -0.32
DDX55-210ENST00000543016 DCP1BQ8IZD4 617 aaKnown RBP13.03□□□□□ -0.32
DDX55-210ENST00000543016 TMEM130Q8N3G9 435 aa13.03□□□□□ -0.32
DDX55-210ENST00000543016 HDAC7Q8WUI4 952 aa13.03□□□□□ -0.32
DDX55-210ENST00000543016 KLHL5Q96PQ7 755 aa13.03□□□□□ -0.32
DDX55-210ENST00000543016 ERGIC2Q96RQ1 377 aa13.03□□□□□ -0.32
DDX55-210ENST00000543016 CDX2Q99626 313 aaPredicted RBP13.03□□□□□ -0.32
DDX55-210ENST00000543016 PI4K2AQ9BTU6 479 aa13.03□□□□□ -0.32
DDX55-210ENST00000543016 SNX25Q9H3E2 840 aa13.03□□□□□ -0.32
DDX55-210ENST00000543016 TLE6Q9H808 572 aa13.03□□□□□ -0.32
DDX55-210ENST00000543016 APOBEC3GQ9HC16 384 aaKnown RBP13.03□□□□□ -0.32
DDX55-210ENST00000543016 PLCB1Q9NQ66 1216 aa13.03□□□□□ -0.32
DDX55-210ENST00000543016 RTN4Q9NQC3 1192 aaKnown RBP13.03□□□□□ -0.32
DDX55-210ENST00000543016 MTMR10Q9NXD2 777 aa13.03□□□□□ -0.32
DDX55-210ENST00000543016 BARX2Q9UMQ3 279 aaPredicted RBP13.03□□□□□ -0.32
DDX55-210ENST00000543016 MTCH2Q9Y6C9 303 aa13.03□□□□□ -0.32
DDX55-210ENST00000543016 A0A1W2PQC6 194 aa13.02□□□□□ -0.33
DDX55-210ENST00000543016 CBFA2T2O43439 604 aa13.02□□□□□ -0.33
DDX55-210ENST00000543016 CNPP09543 421 aaKnown RBP13.02□□□□□ -0.33
DDX55-210ENST00000543016 SRGAP2BP0DMP2 458 aa13.02□□□□□ -0.33
DDX55-210ENST00000543016 IRS1P35568 1242 aa13.02□□□□□ -0.33
DDX55-210ENST00000543016 MFAP3P55082 362 aa13.02□□□□□ -0.33
DDX55-210ENST00000543016 UBASH3AP57075 661 aa13.02□□□□□ -0.33
DDX55-210ENST00000543016 TSPY1Q01534 308 aa13.02□□□□□ -0.33
DDX55-210ENST00000543016 INCA1Q0VD86 236 aa13.02□□□□□ -0.33
DDX55-210ENST00000543016 NFE2Q16621 373 aaPredicted RBP13.02□□□□□ -0.33
DDX55-210ENST00000543016 UVSSAQ2YD98 709 aa13.02□□□□□ -0.33
DDX55-210ENST00000543016 SCARA3Q6AZY7 606 aa13.02□□□□□ -0.33
DDX55-210ENST00000543016 RNF214Q8ND24 703 aa13.02□□□□□ -0.33
DDX55-210ENST00000543016 OR6B3Q8NGW1 331 aa13.02□□□□□ -0.33
DDX55-210ENST00000543016 C2orf15Q8WU43 125 aaKnown RBP13.02□□□□□ -0.33
DDX55-210ENST00000543016 IQCDQ96DY2 449 aa13.02□□□□□ -0.33
DDX55-210ENST00000543016 TNIP3Q96KP6 325 aa13.02□□□□□ -0.33
DDX55-210ENST00000543016 CRACR2AQ9BSW2 395 aa13.02□□□□□ -0.33
DDX55-210ENST00000543016 DDX43Q9NXZ2 648 aaKnown RBP13.02□□□□□ -0.33
DDX55-210ENST00000543016 HSFX1Q9UBD0 423 aa13.02□□□□□ -0.33
DDX55-210ENST00000543016 APEX2Q9UBZ4 518 aa13.02□□□□□ -0.33
DDX55-210ENST00000543016 FBXL5Q9UKA1 691 aa13.02□□□□□ -0.33
DDX55-210ENST00000543016 CDH9Q9ULB4 789 aa13.02□□□□□ -0.33
DDX55-210ENST00000543016 STXBP5LQ9Y2K9 1186 aa13.02□□□□□ -0.33
DDX55-210ENST00000543016 TIMM13Q9Y5L4 95 aaPredicted RBP13.02□□□□□ -0.33
DDX55-210ENST00000543016 LAMA3Q16787 3333 aa13.02□□□□□ -0.33
DDX55-210ENST00000543016 HIDE1A8MVS5 230 aa13.01□□□□□ -0.33
DDX55-210ENST00000543016 C2CD2LO14523 706 aa13.01□□□□□ -0.33
DDX55-210ENST00000543016 TEX28O15482 410 aa13.01□□□□□ -0.33
DDX55-210ENST00000543016 SLC9A1P19634 815 aa13.01□□□□□ -0.33
DDX55-210ENST00000543016 IGFBP4P22692 258 aa13.01□□□□□ -0.33
DDX55-210ENST00000543016 KLRC2P26717 231 aa13.01□□□□□ -0.33
DDX55-210ENST00000543016 CA8P35219 290 aa13.01□□□□□ -0.33
DDX55-210ENST00000543016 KCNMA1Q12791 1236 aa13.01□□□□□ -0.33
DDX55-210ENST00000543016 GPR17Q13304 367 aa13.01□□□□□ -0.33
DDX55-210ENST00000543016 ADGRE1Q14246 886 aa13.01□□□□□ -0.33
DDX55-210ENST00000543016 NR1I3Q14994 352 aa13.01□□□□□ -0.33
DDX55-210ENST00000543016 DUSP6Q16828 381 aa13.01□□□□□ -0.33
DDX55-210ENST00000543016 SPOPLQ6IQ16 392 aa13.01□□□□□ -0.33
DDX55-210ENST00000543016 PRSS55Q6UWB4 352 aaPredicted RBP13.01□□□□□ -0.33
DDX55-210ENST00000543016 PPM1KQ8N3J5 372 aa13.01□□□□□ -0.33
DDX55-210ENST00000543016 ZNF461Q8TAF7 563 aa13.01□□□□□ -0.33
DDX55-210ENST00000543016 KBTBD7Q8WVZ9 684 aa13.01□□□□□ -0.33
DDX55-210ENST00000543016 TATDN2Q93075 761 aa13.01□□□□□ -0.33
DDX55-210ENST00000543016 B3GALT6Q96L58 329 aa13.01□□□□□ -0.33
DDX55-210ENST00000543016 FAM161BQ96MY7 647 aa13.01□□□□□ -0.33
DDX55-210ENST00000543016 CLSTN3Q9BQT9 956 aa13.01□□□□□ -0.33
DDX55-210ENST00000543016 ZCWPW1Q9H0M4 648 aa13.01□□□□□ -0.33
DDX55-210ENST00000543016 SMYD3Q9H7B4 428 aa13.01□□□□□ -0.33
DDX55-210ENST00000543016 KIAA1257Q9ULG3 409 aa13.01□□□□□ -0.33
DDX55-210ENST00000543016 POLIQ9UNA4 740 aa13.01□□□□□ -0.33
DDX55-210ENST00000543016 CDY1Q9Y6F8 540 aa13.01□□□□□ -0.33
DDX55-210ENST00000543016 MYO7AQ13402 2215 aa13□□□□□ -0.33
DDX55-210ENST00000543016 PLXNA4Q9HCM2 1894 aa13□□□□□ -0.33
DDX55-210ENST00000543016 A8MXQ7 604 aa13□□□□□ -0.33
DDX55-210ENST00000543016 CLASP2O75122 1294 aaKnown RBP13□□□□□ -0.33
DDX55-210ENST00000543016 CILPO75339 1184 aa13□□□□□ -0.33
DDX55-210ENST00000543016 ABLIM3O94929 683 aa13□□□□□ -0.33
DDX55-210ENST00000543016 GLUD1P00367 558 aa13□□□□□ -0.33
DDX55-210ENST00000543016 WEE2P0C1S8 567 aa13□□□□□ -0.33
DDX55-210ENST00000543016 FOSL2P15408 326 aa13□□□□□ -0.33
DDX55-210ENST00000543016 OR1D2P34982 312 aa13□□□□□ -0.33
DDX55-210ENST00000543016 LRMPQ12912 555 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms