RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 ACAD10Q6JQN1 1059 aa18.89■□□□□ 0.61
CLIP1-215ENST00000541108 CNKSR3Q6P9H4 555 aa18.89■□□□□ 0.61
CLIP1-215ENST00000541108 UBE2Q1Q7Z7E8 422 aa18.89■□□□□ 0.61
CLIP1-215ENST00000541108 SLC4A11Q8NBS3 891 aa18.89■□□□□ 0.61
CLIP1-215ENST00000541108 KIF18AQ8NI77 898 aa18.89■□□□□ 0.61
CLIP1-215ENST00000541108 SECISBP2LQ93073 1101 aaKnown RBP18.89■□□□□ 0.61
CLIP1-215ENST00000541108 PACSIN1Q9BY11 444 aa18.89■□□□□ 0.61
CLIP1-215ENST00000541108 IRX2Q9BZI1 471 aaPredicted RBP18.89■□□□□ 0.61
CLIP1-215ENST00000541108 DNAI2Q9GZS0 605 aa18.89■□□□□ 0.61
CLIP1-215ENST00000541108 TRIM10Q9UDY6 481 aa18.89■□□□□ 0.61
CLIP1-215ENST00000541108 INPP5FQ9Y2H2 1132 aa18.89■□□□□ 0.61
CLIP1-215ENST00000541108 AARSP49588 968 aaKnown RBP eCLIP18.89■□□□□ 0.61
CLIP1-215ENST00000541108 NDST1P52848 882 aa18.89■□□□□ 0.61
CLIP1-215ENST00000541108 IKBKEQ14164 716 aa18.89■□□□□ 0.61
CLIP1-215ENST00000541108 CTNNBL1Q8WYA6 563 aaPredicted RBP18.89■□□□□ 0.61
CLIP1-215ENST00000541108 ZNF518BQ9C0D4 1074 aa18.89■□□□□ 0.61
CLIP1-215ENST00000541108 ELOVL4Q9GZR5 314 aa18.89■□□□□ 0.61
CLIP1-215ENST00000541108 TAS2R14Q9NYV8 317 aa18.89■□□□□ 0.61
CLIP1-215ENST00000541108 PUF60Q9UHX1 559 aaKnown RBP18.89■□□□□ 0.61
CLIP1-215ENST00000541108 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.88■□□□□ 0.61
CLIP1-215ENST00000541108 TMCO5BA8MYB1 307 aa18.88■□□□□ 0.61
CLIP1-215ENST00000541108 LSM8O95777 96 aaKnown RBP18.88■□□□□ 0.61
CLIP1-215ENST00000541108 VDRP11473 427 aa18.88■□□□□ 0.61
CLIP1-215ENST00000541108 IBSPP21815 317 aaPredicted RBP18.88■□□□□ 0.61
CLIP1-215ENST00000541108 CENPCQ03188 943 aa18.88■□□□□ 0.61
CLIP1-215ENST00000541108 DSC1Q08554 894 aa18.88■□□□□ 0.61
CLIP1-215ENST00000541108 ZNF569Q5MCW4 686 aa18.88■□□□□ 0.61
CLIP1-215ENST00000541108 DCLRE1AQ6PJP8 1040 aa18.88■□□□□ 0.61
CLIP1-215ENST00000541108 SYT10Q6XYQ8 523 aa18.88■□□□□ 0.61
CLIP1-215ENST00000541108 DEFB128Q7Z7B8 93 aa18.88■□□□□ 0.61
CLIP1-215ENST00000541108 ABI1Q8IZP0 508 aa18.88■□□□□ 0.61
CLIP1-215ENST00000541108 TRIM58Q8NG06 486 aa18.88■□□□□ 0.61
CLIP1-215ENST00000541108 CALR3Q96L12 384 aaKnown RBP18.88■□□□□ 0.61
CLIP1-215ENST00000541108 TWNKQ96RR1 684 aa18.88■□□□□ 0.61
CLIP1-215ENST00000541108 MRPL45Q9BRJ2 306 aaKnown RBP18.88■□□□□ 0.61
CLIP1-215ENST00000541108 LRFN2Q9ULH4 789 aa18.88■□□□□ 0.61
CLIP1-215ENST00000541108 PAXBP1Q9Y5B6 917 aa18.88■□□□□ 0.61
CLIP1-215ENST00000541108 MACROD2A1Z1Q3 448 aa18.87■□□□□ 0.61
CLIP1-215ENST00000541108 CASTOR2A6NHX0 329 aa18.87■□□□□ 0.61
CLIP1-215ENST00000541108 CALCAP01258 141 aa18.87■□□□□ 0.61
CLIP1-215ENST00000541108 STILQ15468 1287 aa18.87■□□□□ 0.61
CLIP1-215ENST00000541108 IFI16Q16666 785 aaKnown RBP18.87■□□□□ 0.61
CLIP1-215ENST00000541108 TCTN1Q2MV58 587 aa18.87■□□□□ 0.61
CLIP1-215ENST00000541108 TMEM86AQ8N2M4 240 aa18.87■□□□□ 0.61
CLIP1-215ENST00000541108 KBTBD7Q8WVZ9 684 aa18.87■□□□□ 0.61
CLIP1-215ENST00000541108 TFAP2BQ92481 460 aa18.87■□□□□ 0.61
CLIP1-215ENST00000541108 CYFIP2Q96F07 1278 aa18.87■□□□□ 0.61
CLIP1-215ENST00000541108 VCPIP1Q96JH7 1222 aa18.87■□□□□ 0.61
CLIP1-215ENST00000541108 NOX5Q96PH1 765 aa18.87■□□□□ 0.61
CLIP1-215ENST00000541108 LHX5Q9H2C1 402 aa18.87■□□□□ 0.61
CLIP1-215ENST00000541108 DNAI1Q9UI46 699 aa18.87■□□□□ 0.61
CLIP1-215ENST00000541108 L1RE1Q9UN81 338 aa18.87■□□□□ 0.61
CLIP1-215ENST00000541108 TRIM43BA6NCK2 446 aa18.86■□□□□ 0.61
CLIP1-215ENST00000541108 CYB561D2O14569 222 aa18.86■□□□□ 0.61
CLIP1-215ENST00000541108 B3GAT3O94766 335 aa18.86■□□□□ 0.61
CLIP1-215ENST00000541108 FGFR1P11362 822 aa18.86■□□□□ 0.61
CLIP1-215ENST00000541108 CD19P15391 556 aa18.86■□□□□ 0.61
CLIP1-215ENST00000541108 WARSP23381 471 aaKnown RBP18.86■□□□□ 0.61
CLIP1-215ENST00000541108 BRD2P25440 801 aaKnown RBP18.86■□□□□ 0.61
CLIP1-215ENST00000541108 CDH5P33151 784 aaPredicted RBP18.86■□□□□ 0.61
CLIP1-215ENST00000541108 GNL1P36915 607 aaPredicted RBP18.86■□□□□ 0.61
CLIP1-215ENST00000541108 GPC5P78333 572 aa18.86■□□□□ 0.61
CLIP1-215ENST00000541108 TCEAL1Q15170 157 aa18.86■□□□□ 0.61
CLIP1-215ENST00000541108 CNGA2Q16280 664 aa18.86■□□□□ 0.61
CLIP1-215ENST00000541108 MFSD5Q6N075 450 aa18.86■□□□□ 0.61
CLIP1-215ENST00000541108 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.86■□□□□ 0.61
CLIP1-215ENST00000541108 NPAS4Q8IUM7 802 aa18.86■□□□□ 0.61
CLIP1-215ENST00000541108 CRYBG2Q8N1P7 616 aa18.86■□□□□ 0.61
CLIP1-215ENST00000541108 OR6B3Q8NGW1 331 aa18.86■□□□□ 0.61
CLIP1-215ENST00000541108 SPATA18Q8TC71 538 aa18.86■□□□□ 0.61
CLIP1-215ENST00000541108 TRIM43Q96BQ3 446 aaPredicted RBP18.86■□□□□ 0.61
CLIP1-215ENST00000541108 SENP8Q96LD8 212 aa18.86■□□□□ 0.61
CLIP1-215ENST00000541108 HEXIM2Q96MH2 286 aaKnown RBP18.86■□□□□ 0.61
CLIP1-215ENST00000541108 ZSWIM1Q9BR11 485 aa18.86■□□□□ 0.61
CLIP1-215ENST00000541108 TBC1D13Q9NVG8 400 aa18.86■□□□□ 0.61
CLIP1-215ENST00000541108 HMGXB4Q9UGU5 601 aa18.86■□□□□ 0.61
CLIP1-215ENST00000541108 SALL4Q9UJQ4 1053 aa18.86■□□□□ 0.61
CLIP1-215ENST00000541108 STXBP5LQ9Y2K9 1186 aa18.86■□□□□ 0.61
CLIP1-215ENST00000541108 CEP83Q9Y592 693 aa18.86■□□□□ 0.61
CLIP1-215ENST00000541108 ABHD14A-ACY1A0A1B0GW23 586 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 GABRDO14764 452 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 PFKMP08237 780 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 RAG1P15918 1043 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 EN2P19622 333 aaPredicted RBP18.85■□□□□ 0.61
CLIP1-215ENST00000541108 NSFP46459 744 aaKnown RBP18.85■□□□□ 0.61
CLIP1-215ENST00000541108 NOMO3P69849 1222 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 SGO2Q562F6 1265 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 COLGALT2Q8IYK4 626 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 ADGRF2Q8IZF7 708 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 TMEM199Q8N511 208 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 TMEM35BQ8NCS4 154 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 C3orf58Q8NDZ4 430 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 RFFLQ8WZ73 363 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 VWCEQ96DN2 955 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 TRIM11Q96F44 468 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 ALS2CR12Q96Q35 445 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 WDR24Q96S15 920 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 PAAF1Q9BRP4 392 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 SNX25Q9H3E2 840 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 ARHGEF37A1IGU5 675 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms