RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 DAW1Q8N136 415 aa3.09□□□□□ -1.92
MCF2-208ENST00000519895 C12orf50Q8NA57 414 aaPredicted RBP3.09□□□□□ -1.92
MCF2-208ENST00000519895 LINC01599Q8WXQ3 324 aa3.09□□□□□ -1.92
MCF2-208ENST00000519895 USP28Q96RU2 1077 aa3.09□□□□□ -1.92
MCF2-208ENST00000519895 ADPGKQ9BRR6 497 aa3.09□□□□□ -1.92
MCF2-208ENST00000519895 IFIH1Q9BYX4 1025 aaKnown RBP3.09□□□□□ -1.92
MCF2-208ENST00000519895 TRIM9Q9C026 710 aa3.09□□□□□ -1.92
MCF2-208ENST00000519895 POLR3FQ9H1D9 316 aaPredicted RBP3.09□□□□□ -1.92
MCF2-208ENST00000519895 TOPORSQ9NS56 1045 aaPredicted RBP3.09□□□□□ -1.92
MCF2-208ENST00000519895 SEPT9Q9UHD8 586 aaPredicted RBP3.09□□□□□ -1.92
MCF2-208ENST00000519895 PADI3Q9ULW8 664 aa3.09□□□□□ -1.92
MCF2-208ENST00000519895 TMA7Q9Y2S6 64 aaKnown RBP3.09□□□□□ -1.92
MCF2-208ENST00000519895 BIRC6Q9NR09 4857 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 KALRNO60229 2985 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 TDRD15B5MCY1 1934 aaKnown RBP3.08□□□□□ -1.92
MCF2-208ENST00000519895 SCN5AQ14524 2016 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 ANO9A1A5B4 782 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 M0QZQ0 153 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 OGTO15294 1046 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 N4BP1O75113 896 aaKnown RBP3.08□□□□□ -1.92
MCF2-208ENST00000519895 HNRNPA1P09651 372 aaKnown RBP eCLIP3.08□□□□□ -1.92
MCF2-208ENST00000519895 THPOP40225 353 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 TECP42680 631 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 USP46P62068 366 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 PSMC6P62333 389 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 DPYDQ12882 1025 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 PLD1Q13393 1074 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 TCEAL1Q15170 157 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 TESK1Q15569 626 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 ARSHQ5FYA8 562 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 PLA2G2CQ5R387 149 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 UTP14CQ5TAP6 766 aaKnown RBP3.08□□□□□ -1.92
MCF2-208ENST00000519895 TPGS2Q68CL5 300 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 SDE2Q6IQ49 451 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 PPP1R2P3Q6NXS1 205 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 PDZRN4Q6ZMN7 1036 aaPredicted RBP3.08□□□□□ -1.92
MCF2-208ENST00000519895 KRBA2Q6ZNG9 492 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 OTOP2Q7RTS6 562 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 FMR1NBQ8N0W7 255 aaPredicted RBP3.08□□□□□ -1.92
MCF2-208ENST00000519895 SLC39A11Q8N1S5 342 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 TMEM86AQ8N2M4 240 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 PRPF31Q8WWY3 499 aaKnown RBP3.08□□□□□ -1.92
MCF2-208ENST00000519895 RIN2Q8WYP3 895 aaPredicted RBP3.08□□□□□ -1.92
MCF2-208ENST00000519895 IPO9Q96P70 1041 aaKnown RBP3.08□□□□□ -1.92
MCF2-208ENST00000519895 GBP4Q96PP9 640 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 PPP1R10Q96QC0 940 aaKnown RBP3.08□□□□□ -1.92
MCF2-208ENST00000519895 COLEC11Q9BWP8 271 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 TGIF2Q9GZN2 237 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 CWH43Q9H720 699 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 ABCB6Q9NP58 842 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 TRMT13Q9NUP7 481 aaKnown RBP3.08□□□□□ -1.92
MCF2-208ENST00000519895 FAM105AQ9NUU6 356 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 GDAP2Q9NXN4 497 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 CEP72Q9P209 647 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 WRAP73Q9P2S5 460 aaPredicted RBP3.08□□□□□ -1.92
MCF2-208ENST00000519895 NAP1L2Q9ULW6 460 aaPredicted RBP3.08□□□□□ -1.92
MCF2-208ENST00000519895 TBX20Q9UMR3 447 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 PCDHA7Q9UN72 937 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 ST3GAL5Q9UNP4 418 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 NOC2LQ9Y3T9 749 aaKnown RBP3.08□□□□□ -1.92
MCF2-208ENST00000519895 PCDHB7Q9Y5E2 793 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 PCDHGA10Q9Y5H3 936 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 BICDL2A1A5D9 508 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 FAM221AA4D161 298 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 H7C4K7 107 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 KLRC4O43908 158 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 EXTL3O43909 919 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 HIP1RO75146 1068 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 TBCAO75347 108 aaKnown RBP3.08□□□□□ -1.92
MCF2-208ENST00000519895 PEX14O75381 377 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 NR1I2O75469 434 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 OFD1O75665 1012 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 KIF4AO95239 1232 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 PRKCBP05771 671 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 TDGF1P13385 188 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 PLCG1P19174 1290 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 GTF2F1P35269 517 aaKnown RBP eCLIP3.08□□□□□ -1.92
MCF2-208ENST00000519895 NPTX2P47972 431 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 STRN3Q13033 797 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 PSMD6Q15008 389 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 NAB2Q15742 525 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 ACBD5Q5T8D3 534 aaPredicted RBP3.08□□□□□ -1.92
MCF2-208ENST00000519895 SHC4Q6S5L8 630 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 RTN4RL1Q86UN2 441 aaPredicted RBP3.08□□□□□ -1.92
MCF2-208ENST00000519895 BRSK2Q8IWQ3 736 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 CEP57L1Q8IYX8 460 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 COLGALT1Q8NBJ5 622 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 DEPTORQ8TB45 409 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 ASAP3Q8TDY4 903 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 CACTINQ8WUQ7 758 aaKnown RBP3.08□□□□□ -1.92
MCF2-208ENST00000519895 DNAJB3Q8WWF6 145 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 OVCA2Q8WZ82 227 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 ZNF775Q96BV0 537 aaPredicted RBP3.08□□□□□ -1.92
MCF2-208ENST00000519895 CCDC94Q9BW85 323 aaPredicted RBP3.08□□□□□ -1.92
MCF2-208ENST00000519895 SLC32A1Q9H598 525 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 PDZD7Q9H5P4 517 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 RETREG1Q9H6L5 497 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 CYLDQ9NQC7 956 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 CHST7Q9NS84 486 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 TYW1Q9NV66 732 aaKnown RBP3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms