RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 ZNF560Q96MR9 790 aa21.69■■□□□ 1.06
USP53-208ENST00000514305 CASTOR2A6NHX0 329 aa21.68■■□□□ 1.06
USP53-208ENST00000514305 LRRIQ3A6PVS8 624 aaPredicted RBP21.68■■□□□ 1.06
USP53-208ENST00000514305 LILRB3O75022 631 aa21.68■■□□□ 1.06
USP53-208ENST00000514305 TADA2AO75478 443 aa21.68■■□□□ 1.06
USP53-208ENST00000514305 MCCD1P59942 119 aaPredicted RBP21.68■■□□□ 1.06
USP53-208ENST00000514305 MYO1EQ12965 1108 aa21.68■■□□□ 1.06
USP53-208ENST00000514305 BIRC3Q13489 604 aa21.68■■□□□ 1.06
USP53-208ENST00000514305 CCDC149Q6ZUS6 474 aa21.68■■□□□ 1.06
USP53-208ENST00000514305 GPR149Q86SP6 731 aa21.68■■□□□ 1.06
USP53-208ENST00000514305 ZDHHC14Q8IZN3 488 aa21.68■■□□□ 1.06
USP53-208ENST00000514305 ACSF2Q96CM8 615 aaPredicted RBP21.68■■□□□ 1.06
USP53-208ENST00000514305 BORCS6Q96GS4 357 aa21.68■■□□□ 1.06
USP53-208ENST00000514305 IMPG2Q9BZV3 1241 aa21.68■■□□□ 1.06
USP53-208ENST00000514305 TMEM8AQ9HCN3 771 aa21.68■■□□□ 1.06
USP53-208ENST00000514305 NUB1Q9Y5A7 615 aa21.68■■□□□ 1.06
USP53-208ENST00000514305 TMEM189-UBE2V1I3L0A0 370 aa21.67■■□□□ 1.06
USP53-208ENST00000514305 PODXLO00592 558 aa21.67■■□□□ 1.06
USP53-208ENST00000514305 B3GAT3O94766 335 aa21.67■■□□□ 1.06
USP53-208ENST00000514305 KRT19P08727 400 aa21.67■■□□□ 1.06
USP53-208ENST00000514305 NAB2Q15742 525 aa21.67■■□□□ 1.06
USP53-208ENST00000514305 KRT39Q6A163 491 aa21.67■■□□□ 1.06
USP53-208ENST00000514305 C15orf39Q6ZRI6 1047 aa21.67■■□□□ 1.06
USP53-208ENST00000514305 TRAPPC11Q7Z392 1133 aa21.67■■□□□ 1.06
USP53-208ENST00000514305 EFCAB13Q8IY85 973 aa21.67■■□□□ 1.06
USP53-208ENST00000514305 C18orf25Q96B23 403 aaPredicted RBP21.67■■□□□ 1.06
USP53-208ENST00000514305 MTMR12Q9C0I1 747 aa21.67■■□□□ 1.06
USP53-208ENST00000514305 KCNJ18B7U540 433 aa21.66■■□□□ 1.06
USP53-208ENST00000514305 P4HA2O15460 535 aa21.66■■□□□ 1.06
USP53-208ENST00000514305 MEFVO15553 781 aaPredicted RBP21.66■■□□□ 1.06
USP53-208ENST00000514305 ATICP31939 592 aa21.66■■□□□ 1.06
USP53-208ENST00000514305 CLCNKBP51801 687 aa21.66■■□□□ 1.06
USP53-208ENST00000514305 PTPN5P54829 565 aa21.66■■□□□ 1.06
USP53-208ENST00000514305 KCNJ12Q14500 433 aa21.66■■□□□ 1.06
USP53-208ENST00000514305 UPP1Q16831 310 aa21.66■■□□□ 1.06
USP53-208ENST00000514305 TAS1R1Q7RTX1 841 aa21.66■■□□□ 1.06
USP53-208ENST00000514305 TRIM59Q8IWR1 403 aa21.66■■□□□ 1.06
USP53-208ENST00000514305 LRRC52Q8N7C0 313 aa21.66■■□□□ 1.06
USP53-208ENST00000514305 MED15Q96RN5 788 aa21.66■■□□□ 1.06
USP53-208ENST00000514305 MAN1C1Q9NR34 630 aa21.66■■□□□ 1.06
USP53-208ENST00000514305 FANCLQ9NW38 375 aa21.66■■□□□ 1.06
USP53-208ENST00000514305 TUBGCP4Q9UGJ1 667 aa21.66■■□□□ 1.06
USP53-208ENST00000514305 ADAM28Q9UKQ2 775 aa21.66■■□□□ 1.06
USP53-208ENST00000514305 MTCL1Q9Y4B5 1905 aaKnown RBP21.66■■□□□ 1.06
USP53-208ENST00000514305 TEX28O15482 410 aa21.65■■□□□ 1.06
USP53-208ENST00000514305 GLUD1P00367 558 aa21.65■■□□□ 1.06
USP53-208ENST00000514305 AFPP02771 609 aaKnown RBP21.65■■□□□ 1.06
USP53-208ENST00000514305 ITGB3P05106 788 aa21.65■■□□□ 1.06
USP53-208ENST00000514305 TAF6P49848 677 aa21.65■■□□□ 1.06
USP53-208ENST00000514305 MXI1P50539 228 aa21.65■■□□□ 1.06
USP53-208ENST00000514305 DSG1Q02413 1049 aa21.65■■□□□ 1.06
USP53-208ENST00000514305 MAN2A1Q16706 1144 aa21.65■■□□□ 1.06
USP53-208ENST00000514305 SV2CQ496J9 727 aa21.65■■□□□ 1.06
USP53-208ENST00000514305 TCP11X2Q5H9J9 407 aa21.65■■□□□ 1.06
USP53-208ENST00000514305 C9orf57Q5W0N0 161 aa21.65■■□□□ 1.06
USP53-208ENST00000514305 FUT10Q6P4F1 479 aa21.65■■□□□ 1.06
USP53-208ENST00000514305 OTOP3Q7RTS5 596 aa21.65■■□□□ 1.06
USP53-208ENST00000514305 RNF168Q8IYW5 571 aaPredicted RBP21.65■■□□□ 1.06
USP53-208ENST00000514305 CBX8Q9HC52 389 aa21.65■■□□□ 1.06
USP53-208ENST00000514305 SAMSN1Q9NSI8 373 aaKnown RBP21.65■■□□□ 1.06
USP53-208ENST00000514305 LIMD1Q9UGP4 676 aa21.65■■□□□ 1.06
USP53-208ENST00000514305 AGAP1Q9UPQ3 857 aa21.65■■□□□ 1.06
USP53-208ENST00000514305 BOLA1Q9Y3E2 137 aa21.65■■□□□ 1.06
USP53-208ENST00000514305 SF3B1O75533 1304 aaKnown RBP eCLIP21.64■■□□□ 1.05
USP53-208ENST00000514305 ZDBF2Q9HCK1 2354 aa21.64■■□□□ 1.05
USP53-208ENST00000514305 ANO9A1A5B4 782 aa21.64■■□□□ 1.05
USP53-208ENST00000514305 PMM2O15305 246 aa21.64■■□□□ 1.05
USP53-208ENST00000514305 CLSTN1O94985 981 aa21.64■■□□□ 1.05
USP53-208ENST00000514305 C4BPAP04003 597 aaKnown RBP21.64■■□□□ 1.05
USP53-208ENST00000514305 TRIM49P0CI25 452 aa21.64■■□□□ 1.05
USP53-208ENST00000514305 TRIM49CP0CI26 452 aa21.64■■□□□ 1.05
USP53-208ENST00000514305 P4HA1P13674 534 aa21.64■■□□□ 1.05
USP53-208ENST00000514305 MRE11P49959 708 aa21.64■■□□□ 1.05
USP53-208ENST00000514305 KCNH2Q12809 1159 aa21.64■■□□□ 1.05
USP53-208ENST00000514305 USP41Q3LFD5 358 aa21.64■■□□□ 1.05
USP53-208ENST00000514305 ZACNQ401N2 412 aa21.64■■□□□ 1.05
USP53-208ENST00000514305 FILIP1LQ4L180 1135 aa21.64■■□□□ 1.05
USP53-208ENST00000514305 KIAA0319Q5VV43 1072 aa21.64■■□□□ 1.05
USP53-208ENST00000514305 LMBRD2Q68DH5 695 aaPredicted RBP21.64■■□□□ 1.05
USP53-208ENST00000514305 SV2AQ7L0J3 742 aa21.64■■□□□ 1.05
USP53-208ENST00000514305 C1orf127Q8N9H9 656 aa21.64■■□□□ 1.05
USP53-208ENST00000514305 PRSS33Q8NF86 280 aa21.64■■□□□ 1.05
USP53-208ENST00000514305 OR5B17Q8NGF7 314 aa21.64■■□□□ 1.05
USP53-208ENST00000514305 TAF4BQ92750 862 aa21.64■■□□□ 1.05
USP53-208ENST00000514305 SLC35C1Q96A29 364 aa21.64■■□□□ 1.05
USP53-208ENST00000514305 TUBGCP2Q9BSJ2 902 aa21.64■■□□□ 1.05
USP53-208ENST00000514305 CXCL16Q9H2A7 254 aa21.64■■□□□ 1.05
USP53-208ENST00000514305 MMRN2Q9H8L6 949 aa21.64■■□□□ 1.05
USP53-208ENST00000514305 GOLGA2P5Q9HBQ8 144 aa21.64■■□□□ 1.05
USP53-208ENST00000514305 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP21.64■■□□□ 1.05
USP53-208ENST00000514305 F8W810 466 aa21.63■■□□□ 1.05
USP53-208ENST00000514305 PES1O00541 588 aaKnown RBP21.63■■□□□ 1.05
USP53-208ENST00000514305 PIRO00625 290 aa21.63■■□□□ 1.05
USP53-208ENST00000514305 EFEMP2O95967 443 aa21.63■■□□□ 1.05
USP53-208ENST00000514305 ASGR2P07307 311 aa21.63■■□□□ 1.05
USP53-208ENST00000514305 POLR2BP30876 1174 aaKnown RBP21.63■■□□□ 1.05
USP53-208ENST00000514305 GCLMP48507 274 aa21.63■■□□□ 1.05
USP53-208ENST00000514305 WNT7BP56706 349 aa21.63■■□□□ 1.05
USP53-208ENST00000514305 DLG4P78352 724 aa21.63■■□□□ 1.05
USP53-208ENST00000514305 CREMQ03060 361 aa21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms