RNA–Protein interactions for RNA: ENST00000505054.2

SYNE4-207, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

TSL 3

Gene SYNE4, Length 713 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-207ENST00000505054 TNNC2P02585 160 aa18.15■□□□□ 0.5
SYNE4-207ENST00000505054 RPL17P18621 184 aaKnown RBP18.15■□□□□ 0.5
SYNE4-207ENST00000505054 TAF6P49848 677 aa18.15■□□□□ 0.5
SYNE4-207ENST00000505054 STX17P56962 302 aa18.15■□□□□ 0.5
SYNE4-207ENST00000505054 FKBP3Q00688 224 aaKnown RBP18.15■□□□□ 0.5
SYNE4-207ENST00000505054 PAK1Q13153 545 aa18.15■□□□□ 0.5
SYNE4-207ENST00000505054 PSMD5Q16401 504 aa18.15■□□□□ 0.5
SYNE4-207ENST00000505054 DPCR1Q3MIW9 517 aa18.15■□□□□ 0.5
SYNE4-207ENST00000505054 ELMSAN1Q6PJG2 1045 aa18.15■□□□□ 0.5
SYNE4-207ENST00000505054 FOXR2Q6PJQ5 311 aa18.15■□□□□ 0.5
SYNE4-207ENST00000505054 TRAPPC11Q7Z392 1133 aa18.15■□□□□ 0.5
SYNE4-207ENST00000505054 CSGALNACT2Q8N6G5 542 aa18.15■□□□□ 0.5
SYNE4-207ENST00000505054 BORCS6Q96GS4 357 aa18.15■□□□□ 0.5
SYNE4-207ENST00000505054 MED15Q96RN5 788 aa18.15■□□□□ 0.5
SYNE4-207ENST00000505054 RTP3Q9BQQ7 232 aa18.15■□□□□ 0.5
SYNE4-207ENST00000505054 MKNK1Q9BUB5 465 aa18.15■□□□□ 0.5
SYNE4-207ENST00000505054 KCNK12Q9HB15 430 aa18.15■□□□□ 0.5
SYNE4-207ENST00000505054 IGSF9Q9P2J2 1179 aa18.15■□□□□ 0.5
SYNE4-207ENST00000505054 FBXL21Q9UKT6 434 aa18.15■□□□□ 0.5
SYNE4-207ENST00000505054 SSX2IPQ9Y2D8 614 aa18.15■□□□□ 0.5
SYNE4-207ENST00000505054 VWA8A3KMH1 1905 aa18.15■□□□□ 0.5
SYNE4-207ENST00000505054 SLC16A3O15427 465 aaKnown RBP18.14■□□□□ 0.49
SYNE4-207ENST00000505054 ADH1AP07327 375 aa18.14■□□□□ 0.49
SYNE4-207ENST00000505054 NPR3P17342 541 aa18.14■□□□□ 0.49
SYNE4-207ENST00000505054 MCCD1P59942 119 aaPredicted RBP18.14■□□□□ 0.49
SYNE4-207ENST00000505054 RBP5P82980 135 aa18.14■□□□□ 0.49
SYNE4-207ENST00000505054 VARS2Q5ST30 1063 aaKnown RBP18.14■□□□□ 0.49
SYNE4-207ENST00000505054 CCDC183Q5T5S1 534 aa18.14■□□□□ 0.49
SYNE4-207ENST00000505054 RSPO2Q6UXX9 243 aaPredicted RBP18.14■□□□□ 0.49
SYNE4-207ENST00000505054 INTS8Q75QN2 995 aaKnown RBP18.14■□□□□ 0.49
SYNE4-207ENST00000505054 LRRC52Q8N7C0 313 aa18.14■□□□□ 0.49
SYNE4-207ENST00000505054 MLKLQ8NB16 471 aa18.14■□□□□ 0.49
SYNE4-207ENST00000505054 ZNF560Q96MR9 790 aa18.14■□□□□ 0.49
SYNE4-207ENST00000505054 RHOBTB2Q9BYZ6 727 aa18.14■□□□□ 0.49
SYNE4-207ENST00000505054 MAN1C1Q9NR34 630 aa18.14■□□□□ 0.49
SYNE4-207ENST00000505054 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.14■□□□□ 0.49
SYNE4-207ENST00000505054 TMEM63CQ9P1W3 806 aa18.14■□□□□ 0.49
SYNE4-207ENST00000505054 FNIP2Q9P278 1114 aa18.14■□□□□ 0.49
SYNE4-207ENST00000505054 MTRRQ9UBK8 725 aa18.14■□□□□ 0.49
SYNE4-207ENST00000505054 DPP7Q9UHL4 492 aa18.14■□□□□ 0.49
SYNE4-207ENST00000505054 BICDL2A1A5D9 508 aa18.13■□□□□ 0.49
SYNE4-207ENST00000505054 ADAM12O43184 909 aa18.13■□□□□ 0.49
SYNE4-207ENST00000505054 KRT19P08727 400 aa18.13■□□□□ 0.49
SYNE4-207ENST00000505054 TRIM49P0CI25 452 aa18.13■□□□□ 0.49
SYNE4-207ENST00000505054 TRIM49CP0CI26 452 aa18.13■□□□□ 0.49
SYNE4-207ENST00000505054 EPB41P11171 864 aaKnown RBP18.13■□□□□ 0.49
SYNE4-207ENST00000505054 PAX3P23760 479 aa18.13■□□□□ 0.49
SYNE4-207ENST00000505054 PNPLA4P41247 253 aa18.13■□□□□ 0.49
SYNE4-207ENST00000505054 VAMP7P51809 220 aa18.13■□□□□ 0.49
SYNE4-207ENST00000505054 NLRP12P59046 1061 aa18.13■□□□□ 0.49
SYNE4-207ENST00000505054 BFSP1Q12934 665 aa18.13■□□□□ 0.49
SYNE4-207ENST00000505054 SV2CQ496J9 727 aa18.13■□□□□ 0.49
SYNE4-207ENST00000505054 TDRD10Q5VZ19 366 aaKnown RBP18.13■□□□□ 0.49
SYNE4-207ENST00000505054 CYP26C1Q6V0L0 522 aa18.13■□□□□ 0.49
SYNE4-207ENST00000505054 DSTYKQ6XUX3 929 aa18.13■□□□□ 0.49
SYNE4-207ENST00000505054 SIX5Q8N196 739 aa18.13■□□□□ 0.49
SYNE4-207ENST00000505054 SENP8Q96LD8 212 aa18.13■□□□□ 0.49
SYNE4-207ENST00000505054 CLSTN3Q9BQT9 956 aa18.13■□□□□ 0.49
SYNE4-207ENST00000505054 RWDD2AQ9UIY3 292 aa18.13■□□□□ 0.49
SYNE4-207ENST00000505054 TIMM13Q9Y5L4 95 aaPredicted RBP18.13■□□□□ 0.49
SYNE4-207ENST00000505054 CLUHO75153 1309 aa18.13■□□□□ 0.49
SYNE4-207ENST00000505054 GVINP1Q7Z2Y8 2422 aa18.12■□□□□ 0.49
SYNE4-207ENST00000505054 KPNA7A9QM74 516 aa18.12■□□□□ 0.49
SYNE4-207ENST00000505054 TBC1D4O60343 1298 aa18.12■□□□□ 0.49
SYNE4-207ENST00000505054 GLUD1P00367 558 aa18.12■□□□□ 0.49
SYNE4-207ENST00000505054 C4BPAP04003 597 aaKnown RBP18.12■□□□□ 0.49
SYNE4-207ENST00000505054 KRT13P13646 458 aa18.12■□□□□ 0.49
SYNE4-207ENST00000505054 AP3M2P53677 418 aa18.12■□□□□ 0.49
SYNE4-207ENST00000505054 CREMQ03060 361 aa18.12■□□□□ 0.49
SYNE4-207ENST00000505054 ENPEPQ07075 957 aa18.12■□□□□ 0.49
SYNE4-207ENST00000505054 MRPL58Q14197 206 aaKnown RBP18.12■□□□□ 0.49
SYNE4-207ENST00000505054 ANGPT1Q15389 498 aa18.12■□□□□ 0.49
SYNE4-207ENST00000505054 PDXDC1Q6P996 788 aa18.12■□□□□ 0.49
SYNE4-207ENST00000505054 ANKS3Q6ZW76 656 aa18.12■□□□□ 0.49
SYNE4-207ENST00000505054 GLYCTKQ8IVS8 523 aa18.12■□□□□ 0.49
SYNE4-207ENST00000505054 APPL2Q8NEU8 664 aa18.12■□□□□ 0.49
SYNE4-207ENST00000505054 CEP63Q96MT8 703 aa18.12■□□□□ 0.49
SYNE4-207ENST00000505054 WDR6Q9NNW5 1121 aaKnown RBP18.12■□□□□ 0.49
SYNE4-207ENST00000505054 BACE2Q9Y5Z0 518 aa18.12■□□□□ 0.49
SYNE4-207ENST00000505054 SCN1AP35498 2009 aa18.11■□□□□ 0.49
SYNE4-207ENST00000505054 IKBKBO14920 756 aa18.11■□□□□ 0.49
SYNE4-207ENST00000505054 PI15O43692 258 aa18.11■□□□□ 0.49
SYNE4-207ENST00000505054 N4BP1O75113 896 aaKnown RBP18.11■□□□□ 0.49
SYNE4-207ENST00000505054 VNN1O95497 513 aa18.11■□□□□ 0.49
SYNE4-207ENST00000505054 CST3P01034 146 aaPredicted RBP18.11■□□□□ 0.49
SYNE4-207ENST00000505054 ODC1P11926 461 aa18.11■□□□□ 0.49
SYNE4-207ENST00000505054 TYMPP19971 482 aa18.11■□□□□ 0.49
SYNE4-207ENST00000505054 PPP3CAQ08209 521 aa18.11■□□□□ 0.49
SYNE4-207ENST00000505054 BIRC3Q13489 604 aa18.11■□□□□ 0.49
SYNE4-207ENST00000505054 ZACNQ401N2 412 aa18.11■□□□□ 0.49
SYNE4-207ENST00000505054 DTWD2Q8NBA8 298 aa18.11■□□□□ 0.49
SYNE4-207ENST00000505054 HPDLQ96IR7 371 aa18.11■□□□□ 0.49
SYNE4-207ENST00000505054 TSC2P49815 1807 aa18.11■□□□□ 0.49
SYNE4-207ENST00000505054 DCHS1Q96JQ0 3298 aa18.1■□□□□ 0.49
SYNE4-207ENST00000505054 CCDC195A0A1B0GUA6 201 aa18.1■□□□□ 0.49
SYNE4-207ENST00000505054 CYB561D2O14569 222 aa18.1■□□□□ 0.49
SYNE4-207ENST00000505054 NARSO43776 548 aaKnown RBP18.1■□□□□ 0.49
SYNE4-207ENST00000505054 OAZ2O95190 189 aa18.1■□□□□ 0.49
SYNE4-207ENST00000505054 CYP11A1P05108 521 aa18.1■□□□□ 0.49
SYNE4-207ENST00000505054 GBP2P32456 591 aaPredicted RBP18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms