RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 GPR153Q6NV75 609 aa12.74□□□□□ -0.37
CUX1-210ENST00000497815 GJB7Q6PEY0 223 aa12.74□□□□□ -0.37
CUX1-210ENST00000497815 TRIM65Q6PJ69 517 aa12.74□□□□□ -0.37
CUX1-210ENST00000497815 ANKS3Q6ZW76 656 aa12.74□□□□□ -0.37
CUX1-210ENST00000497815 ADGRD2Q7Z7M1 963 aa12.74□□□□□ -0.37
CUX1-210ENST00000497815 RBM23Q86U06 439 aaKnown RBP12.74□□□□□ -0.37
CUX1-210ENST00000497815 OSTM1Q86WC4 334 aa12.74□□□□□ -0.37
CUX1-210ENST00000497815 THEM5Q8N1Q8 247 aa12.74□□□□□ -0.37
CUX1-210ENST00000497815 TMEM86AQ8N2M4 240 aa12.74□□□□□ -0.37
CUX1-210ENST00000497815 MICALL1Q8N3F8 863 aa12.74□□□□□ -0.37
CUX1-210ENST00000497815 MRPL43Q8N983 215 aaKnown RBP12.74□□□□□ -0.37
CUX1-210ENST00000497815 OR6B3Q8NGW1 331 aa12.74□□□□□ -0.37
CUX1-210ENST00000497815 LNX1Q8TBB1 728 aaPredicted RBP12.74□□□□□ -0.37
CUX1-210ENST00000497815 KBTBD7Q8WVZ9 684 aa12.74□□□□□ -0.37
CUX1-210ENST00000497815 MYLIPQ8WY64 445 aa12.74□□□□□ -0.37
CUX1-210ENST00000497815 PIK3R5Q8WYR1 880 aa12.74□□□□□ -0.37
CUX1-210ENST00000497815 MRPL38Q96DV4 380 aaKnown RBP12.74□□□□□ -0.37
CUX1-210ENST00000497815 GAS2L1Q99501 681 aaPredicted RBP12.74□□□□□ -0.37
CUX1-210ENST00000497815 LSM14BQ9BX40 385 aaKnown RBP12.74□□□□□ -0.37
CUX1-210ENST00000497815 NGRNQ9NPE2 291 aaKnown RBP12.74□□□□□ -0.37
CUX1-210ENST00000497815 RTN4Q9NQC3 1192 aaKnown RBP12.74□□□□□ -0.37
CUX1-210ENST00000497815 DDX43Q9NXZ2 648 aaKnown RBP12.74□□□□□ -0.37
CUX1-210ENST00000497815 SSX2IPQ9Y2D8 614 aa12.74□□□□□ -0.37
CUX1-210ENST00000497815 SCN1AP35498 2009 aa12.74□□□□□ -0.37
CUX1-210ENST00000497815 A0A1B0GTH6 734 aa12.73□□□□□ -0.37
CUX1-210ENST00000497815 C2orf71A6NGG8 1288 aa12.73□□□□□ -0.37
CUX1-210ENST00000497815 PER2O15055 1255 aa12.73□□□□□ -0.37
CUX1-210ENST00000497815 TEX28O15482 410 aa12.73□□□□□ -0.37
CUX1-210ENST00000497815 ADAM12O43184 909 aa12.73□□□□□ -0.37
CUX1-210ENST00000497815 CYP11A1P05108 521 aa12.73□□□□□ -0.37
CUX1-210ENST00000497815 CNPP09543 421 aaKnown RBP12.73□□□□□ -0.37
CUX1-210ENST00000497815 PDGFRBP09619 1106 aa12.73□□□□□ -0.37
CUX1-210ENST00000497815 OR4Q2P0C623 313 aa12.73□□□□□ -0.37
CUX1-210ENST00000497815 WARSP23381 471 aaKnown RBP12.73□□□□□ -0.37
CUX1-210ENST00000497815 LMO2P25791 158 aa12.73□□□□□ -0.37
CUX1-210ENST00000497815 ORC1Q13415 861 aa12.73□□□□□ -0.37
CUX1-210ENST00000497815 CUL2Q13617 745 aa12.73□□□□□ -0.37
CUX1-210ENST00000497815 PDE12Q6L8Q7 609 aaKnown RBP12.73□□□□□ -0.37
CUX1-210ENST00000497815 PHLDB3Q6NSJ2 640 aa12.73□□□□□ -0.37
CUX1-210ENST00000497815 PDXDC1Q6P996 788 aa12.73□□□□□ -0.37
CUX1-210ENST00000497815 RSPO2Q6UXX9 243 aaPredicted RBP12.73□□□□□ -0.37
CUX1-210ENST00000497815 DPH6Q7L8W6 267 aa12.73□□□□□ -0.37
CUX1-210ENST00000497815 KAT5Q92993 513 aa12.73□□□□□ -0.37
CUX1-210ENST00000497815 TMEM209Q96SK2 561 aa12.73□□□□□ -0.37
CUX1-210ENST00000497815 CDX2Q99626 313 aaPredicted RBP12.73□□□□□ -0.37
CUX1-210ENST00000497815 EMILIN2Q9BXX0 1053 aa12.73□□□□□ -0.37
CUX1-210ENST00000497815 SIX2Q9NPC8 291 aa12.73□□□□□ -0.37
CUX1-210ENST00000497815 UBE2TQ9NPD8 197 aaPredicted RBP12.73□□□□□ -0.37
CUX1-210ENST00000497815 FAM207AQ9NSI2 230 aaPredicted RBP12.73□□□□□ -0.37
CUX1-210ENST00000497815 MTRRQ9UBK8 725 aa12.73□□□□□ -0.37
CUX1-210ENST00000497815 FBXL5Q9UKA1 691 aa12.73□□□□□ -0.37
CUX1-210ENST00000497815 CDY1Q9Y6F8 540 aa12.73□□□□□ -0.37
CUX1-210ENST00000497815 A8MXQ7 604 aa12.72□□□□□ -0.37
CUX1-210ENST00000497815 LILRB3O75022 631 aa12.72□□□□□ -0.37
CUX1-210ENST00000497815 TACC1O75410 805 aa12.72□□□□□ -0.37
CUX1-210ENST00000497815 OAZ2O95190 189 aa12.72□□□□□ -0.37
CUX1-210ENST00000497815 CPB1P15086 417 aa12.72□□□□□ -0.37
CUX1-210ENST00000497815 KLRC2P26717 231 aa12.72□□□□□ -0.37
CUX1-210ENST00000497815 OR1D2P34982 312 aa12.72□□□□□ -0.37
CUX1-210ENST00000497815 GNL1P36915 607 aaPredicted RBP12.72□□□□□ -0.37
CUX1-210ENST00000497815 NRIP1P48552 1158 aa12.72□□□□□ -0.37
CUX1-210ENST00000497815 LHX1P48742 406 aa12.72□□□□□ -0.37
CUX1-210ENST00000497815 PSMC1P62191 440 aaKnown RBP12.72□□□□□ -0.37
CUX1-210ENST00000497815 CREMQ03060 361 aa12.72□□□□□ -0.37
CUX1-210ENST00000497815 MRPL58Q14197 206 aaKnown RBP12.72□□□□□ -0.37
CUX1-210ENST00000497815 ARHGAP44Q17R89 818 aa12.72□□□□□ -0.37
CUX1-210ENST00000497815 LIMS2Q7Z4I7 341 aa12.72□□□□□ -0.37
CUX1-210ENST00000497815 PALB2Q86YC2 1186 aa12.72□□□□□ -0.37
CUX1-210ENST00000497815 OR10T2Q8NGX3 314 aa12.72□□□□□ -0.37
CUX1-210ENST00000497815 GUCD1Q96NT3 240 aa12.72□□□□□ -0.37
CUX1-210ENST00000497815 KLHL5Q96PQ7 755 aa12.72□□□□□ -0.37
CUX1-210ENST00000497815 RTP3Q9BQQ7 232 aa12.72□□□□□ -0.37
CUX1-210ENST00000497815 CLSTN3Q9BQT9 956 aa12.72□□□□□ -0.37
CUX1-210ENST00000497815 BCO2Q9BYV7 579 aa12.72□□□□□ -0.37
CUX1-210ENST00000497815 XPO4Q9C0E2 1151 aaKnown RBP12.72□□□□□ -0.37
CUX1-210ENST00000497815 IGFLR1Q9H665 355 aa12.72□□□□□ -0.37
CUX1-210ENST00000497815 TLE6Q9H808 572 aa12.72□□□□□ -0.37
CUX1-210ENST00000497815 CYP3A43Q9HB55 503 aa12.72□□□□□ -0.37
CUX1-210ENST00000497815 RXFP1Q9HBX9 757 aa12.72□□□□□ -0.37
CUX1-210ENST00000497815 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.72□□□□□ -0.37
CUX1-210ENST00000497815 CISHQ9NSE2 258 aa12.72□□□□□ -0.37
CUX1-210ENST00000497815 APEX2Q9UBZ4 518 aa12.72□□□□□ -0.37
CUX1-210ENST00000497815 HMGXB4Q9UGU5 601 aa12.72□□□□□ -0.37
CUX1-210ENST00000497815 AJAP1Q9UKB5 411 aaPredicted RBP12.72□□□□□ -0.37
CUX1-210ENST00000497815 NME7Q9Y5B8 376 aa12.72□□□□□ -0.37
CUX1-210ENST00000497815 BACE2Q9Y5Z0 518 aa12.72□□□□□ -0.37
CUX1-210ENST00000497815 MTCH2Q9Y6C9 303 aa12.72□□□□□ -0.37
CUX1-210ENST00000497815 TSC2P49815 1807 aa12.72□□□□□ -0.37
CUX1-210ENST00000497815 GABRDO14764 452 aa12.71□□□□□ -0.37
CUX1-210ENST00000497815 ATP2C2O75185 946 aa12.71□□□□□ -0.37
CUX1-210ENST00000497815 SPATA31D3P0C874 917 aa12.71□□□□□ -0.37
CUX1-210ENST00000497815 TBXAS1P24557 533 aaPredicted RBP12.71□□□□□ -0.37
CUX1-210ENST00000497815 NDUFV1P49821 464 aa12.71□□□□□ -0.37
CUX1-210ENST00000497815 NDST1P52848 882 aa12.71□□□□□ -0.37
CUX1-210ENST00000497815 NR1I3Q14994 352 aa12.71□□□□□ -0.37
CUX1-210ENST00000497815 CCDC142Q17RM4 750 aa12.71□□□□□ -0.37
CUX1-210ENST00000497815 ZNF394Q53GI3 561 aa12.71□□□□□ -0.37
CUX1-210ENST00000497815 TCEAL5Q5H9L2 206 aa12.71□□□□□ -0.37
CUX1-210ENST00000497815 KLHDC7AQ5VTJ3 777 aa12.71□□□□□ -0.37
CUX1-210ENST00000497815 LLGL2Q6P1M3 1020 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms