RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 ELF1P32519 619 aa17.48■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 STX17P56962 302 aa17.48■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 MYL6P60660 151 aa17.48■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 TNNC1P63316 161 aa17.48■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 NCOA4Q13772 614 aa17.48■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 UVSSAQ2YD98 709 aa17.48■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 ATAT1Q5SQI0 421 aa17.48■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 RNF19BQ6ZMZ0 732 aa17.48■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 SV2AQ7L0J3 742 aa17.48■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 RTL10Q7L3V2 364 aa17.48■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 DPH6Q7L8W6 267 aa17.48■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 ADHFE1Q8IWW8 467 aa17.48■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 ADGRF2Q8IZF7 708 aa17.48■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 OR10T2Q8NGX3 314 aa17.48■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 FEZF2Q8TBJ5 459 aa17.48■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 TMEM209Q96SK2 561 aa17.48■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 RTP3Q9BQQ7 232 aa17.48■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 PHF7Q9BWX1 381 aaPredicted RBP17.48■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 RHOBTB2Q9BYZ6 727 aa17.48■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 PRKD2Q9BZL6 878 aa17.48■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 MAFFQ9ULX9 164 aa17.48■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 TCF20Q9UGU0 1960 aaKnown RBP17.48■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 CLSTN1O94985 981 aa17.47■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 PIK3CAP42336 1068 aa17.47■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 GCLMP48507 274 aa17.47■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 MCCD1P59942 119 aaPredicted RBP17.47■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 MYL7Q01449 175 aa17.47■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 PPP3CAQ08209 521 aa17.47■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 ADCY1Q08828 1119 aa17.47■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 GPR17Q13304 367 aa17.47■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 SOWAHAQ2M3V2 549 aa17.47■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 ZNF699Q32M78 642 aa17.47■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 LIMS2Q7Z4I7 341 aa17.47■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 MLKLQ8NB16 471 aa17.47■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 SMG7Q92540 1137 aaKnown RBP17.47■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 ZNF707Q96C28 371 aaPredicted RBP17.47■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 NECAB3Q96P71 396 aaPredicted RBP17.47■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 MMS19Q96T76 1030 aa17.47■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 COL25A1Q9BXS0 654 aaPredicted RBP17.47■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 ZCWPW1Q9H0M4 648 aa17.47■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 XYLT2Q9H1B5 865 aa17.47■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 POMKQ9H5K3 350 aa17.47■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 MMRN2Q9H8L6 949 aa17.47■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 VRTNQ9H8Y1 702 aa17.47■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 CYP4F11Q9HBI6 524 aa17.47■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 TMEM8AQ9HCN3 771 aa17.47■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 PRRG1O14668 218 aa17.46■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 STX10O60499 249 aa17.46■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 SEC24AO95486 1093 aa17.46■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 HLA-DRAP01903 254 aa17.46■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 GTF2H1P32780 548 aa17.46■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 LHX1P48742 406 aa17.46■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 ZP2Q05996 745 aa17.46■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 WDR72Q3MJ13 1102 aa17.46■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 DCAF17Q5H9S7 520 aaPredicted RBP17.46■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 TCERG1LQ5VWI1 586 aa17.46■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 FILIP1Q7Z7B0 1213 aa17.46■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 OSTM1Q86WC4 334 aa17.46■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 TCEAL8Q8IYN2 117 aa17.46■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 PGLYRP2Q96PD5 576 aa17.46■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 PIDD1Q9HB75 910 aa17.46■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 METTL14Q9HCE5 456 aaKnown RBP17.46■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 DDX43Q9NXZ2 648 aaKnown RBP17.46■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 NXF1Q9UBU9 619 aaKnown RBP17.46■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 ARMCX3Q9UH62 379 aaPredicted RBP17.46■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 RWDD2AQ9UIY3 292 aa17.46■□□□□ 0.39
MSH5-SAPCD1-206ENST00000491552 MTMR11A4FU01 709 aa17.45■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 GABRDO14764 452 aa17.45■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 CCL16O15467 120 aa17.45■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 XYLBO75191 536 aa17.45■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 POU2F2P09086 479 aa17.45■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 NLRP12P59046 1061 aa17.45■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 TSPY1Q01534 308 aa17.45■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 SGSM1Q2NKQ1 1148 aa17.45■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 CCDC40Q4G0X9 1142 aa17.45■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 SLC39A12Q504Y0 691 aa17.45■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 ZNF667Q5HYK9 610 aa17.45■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 KRT39Q6A163 491 aa17.45■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 FRMD5Q7Z6J6 570 aa17.45■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 DCP1BQ8IZD4 617 aaKnown RBP17.45■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 KBTBD7Q8WVZ9 684 aa17.45■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 TAF4BQ92750 862 aa17.45■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 ACBD6Q9BR61 282 aa17.45■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 INSL5Q9Y5Q6 135 aa17.45■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 C2orf16Q68DN1 1984 aa17.45■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 DENND4AQ7Z401 1863 aa17.44■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 TACC1O75410 805 aa17.44■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 VNN2O95498 520 aa17.44■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 FGFR1OPO95684 399 aaKnown RBP17.44■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 LRG1P02750 347 aa17.44■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 WARSP23381 471 aaKnown RBP17.44■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 ACAT1P24752 427 aaKnown RBP17.44■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 PCSK1P29120 753 aa17.44■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 MXI1P50539 228 aa17.44■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 SMARCB1Q12824 385 aa17.44■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 DPCR1Q3MIW9 517 aa17.44■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 RBM43Q6ZSC3 357 aaKnown RBP17.44■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 TAS1R2Q8TE23 839 aa17.44■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 IMPG2Q9BZV3 1241 aa17.44■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 WDR6Q9NNW5 1121 aaKnown RBP17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms