RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 MGAT3Q09327 533 aa12.96□□□□□ -0.34
HDAC6-230ENST00000488543 KYAT1Q16773 422 aa12.96□□□□□ -0.34
HDAC6-230ENST00000488543 TRIM71Q2Q1W2 868 aaKnown RBP12.96□□□□□ -0.34
HDAC6-230ENST00000488543 ACAD10Q6JQN1 1059 aa12.96□□□□□ -0.34
HDAC6-230ENST00000488543 NOTUMQ6P988 496 aa12.96□□□□□ -0.34
HDAC6-230ENST00000488543 SLC27A1Q6PCB7 646 aa12.96□□□□□ -0.34
HDAC6-230ENST00000488543 TMEM270Q6UE05 265 aa12.96□□□□□ -0.34
HDAC6-230ENST00000488543 NT5DC3Q86UY8 548 aa12.96□□□□□ -0.34
HDAC6-230ENST00000488543 ZNF677Q86XU0 584 aa12.96□□□□□ -0.34
HDAC6-230ENST00000488543 MMGT1Q8N4V1 131 aa12.96□□□□□ -0.34
HDAC6-230ENST00000488543 RPGRIP1Q96KN7 1286 aa12.96□□□□□ -0.34
HDAC6-230ENST00000488543 ADPGKQ9BRR6 497 aa12.96□□□□□ -0.34
HDAC6-230ENST00000488543 IMPG2Q9BZV3 1241 aa12.96□□□□□ -0.34
HDAC6-230ENST00000488543 GOLGA6AQ9NYA3 693 aa12.96□□□□□ -0.34
HDAC6-230ENST00000488543 MROH7Q68CQ1 1323 aa12.95□□□□□ -0.34
HDAC6-230ENST00000488543 ARVCFO00192 962 aa12.95□□□□□ -0.34
HDAC6-230ENST00000488543 RPS6KA5O75582 802 aa12.95□□□□□ -0.34
HDAC6-230ENST00000488543 MTA2O94776 668 aa12.95□□□□□ -0.34
HDAC6-230ENST00000488543 CYP1A2P05177 515 aa12.95□□□□□ -0.34
HDAC6-230ENST00000488543 TUBBP07437 444 aa12.95□□□□□ -0.34
HDAC6-230ENST00000488543 CFHP08603 1231 aa12.95□□□□□ -0.34
HDAC6-230ENST00000488543 GHRP10912 638 aa12.95□□□□□ -0.34
HDAC6-230ENST00000488543 GRM5P41594 1212 aa12.95□□□□□ -0.34
HDAC6-230ENST00000488543 ASPAP45381 313 aa12.95□□□□□ -0.34
HDAC6-230ENST00000488543 TRPC3Q13507 836 aa12.95□□□□□ -0.34
HDAC6-230ENST00000488543 TMCO4Q5TGY1 634 aa12.95□□□□□ -0.34
HDAC6-230ENST00000488543 C8orf74Q6P047 294 aa12.95□□□□□ -0.34
HDAC6-230ENST00000488543 CTU1Q7Z7A3 348 aaKnown RBP12.95□□□□□ -0.34
HDAC6-230ENST00000488543 SLC43A3Q8NBI5 491 aa12.95□□□□□ -0.34
HDAC6-230ENST00000488543 ASB7Q9H672 318 aa12.95□□□□□ -0.34
HDAC6-230ENST00000488543 OGDHLQ9ULD0 1010 aa12.95□□□□□ -0.34
HDAC6-230ENST00000488543 NFU1Q9UMS0 254 aa12.95□□□□□ -0.34
HDAC6-230ENST00000488543 DNM1LO00429 736 aa12.95□□□□□ -0.34
HDAC6-230ENST00000488543 ATMINO43313 823 aaPredicted RBP12.95□□□□□ -0.34
HDAC6-230ENST00000488543 CYP1A1P04798 512 aaPredicted RBP12.95□□□□□ -0.34
HDAC6-230ENST00000488543 CD52P31358 61 aa12.95□□□□□ -0.34
HDAC6-230ENST00000488543 PTK7Q13308 1070 aa12.95□□□□□ -0.34
HDAC6-230ENST00000488543 RPS6KA1Q15418 735 aa12.95□□□□□ -0.34
HDAC6-230ENST00000488543 ZNF699Q32M78 642 aa12.95□□□□□ -0.34
HDAC6-230ENST00000488543 DCAF4L1Q3SXM0 396 aa12.95□□□□□ -0.34
HDAC6-230ENST00000488543 TTMPQ5BVD1 217 aa12.95□□□□□ -0.34
HDAC6-230ENST00000488543 UBXN11Q5T124 520 aa12.95□□□□□ -0.34
HDAC6-230ENST00000488543 RHOT2Q8IXI1 618 aa12.95□□□□□ -0.34
HDAC6-230ENST00000488543 ACAP3Q96P50 834 aa12.95□□□□□ -0.34
HDAC6-230ENST00000488543 STIM2Q9P246 746 aa12.95□□□□□ -0.34
HDAC6-230ENST00000488543 POLIQ9UNA4 740 aa12.95□□□□□ -0.34
HDAC6-230ENST00000488543 KRT14P02533 472 aa12.94□□□□□ -0.34
HDAC6-230ENST00000488543 IBSPP21815 317 aaPredicted RBP12.94□□□□□ -0.34
HDAC6-230ENST00000488543 MCM3P25205 808 aa12.94□□□□□ -0.34
HDAC6-230ENST00000488543 MNX1P50219 401 aaPredicted RBP12.94□□□□□ -0.34
HDAC6-230ENST00000488543 ITIH3Q06033 890 aa12.94□□□□□ -0.34
HDAC6-230ENST00000488543 DAAM2Q86T65 1068 aa12.94□□□□□ -0.34
HDAC6-230ENST00000488543 RPAINQ86UA6 219 aa12.94□□□□□ -0.34
HDAC6-230ENST00000488543 SYCE1Q8N0S2 351 aa12.94□□□□□ -0.34
HDAC6-230ENST00000488543 KRT12Q99456 494 aa12.94□□□□□ -0.34
HDAC6-230ENST00000488543 TRIM6Q9C030 488 aaPredicted RBP12.94□□□□□ -0.34
HDAC6-230ENST00000488543 SLC24A3Q9HC58 644 aa12.94□□□□□ -0.34
HDAC6-230ENST00000488543 KLK14Q9P0G3 267 aa12.94□□□□□ -0.34
HDAC6-230ENST00000488543 PCDH10Q9P2E7 1040 aa12.94□□□□□ -0.34
HDAC6-230ENST00000488543 FRMPD3Q5JV73 1810 aa12.94□□□□□ -0.34
HDAC6-230ENST00000488543 MEIS3P2A8K0S8 358 aa12.94□□□□□ -0.34
HDAC6-230ENST00000488543 HSPA1AP0DMV8 641 aaKnown RBP12.94□□□□□ -0.34
HDAC6-230ENST00000488543 HSPA1BP0DMV9 641 aaKnown RBP12.94□□□□□ -0.34
HDAC6-230ENST00000488543 CKBP12277 381 aa12.94□□□□□ -0.34
HDAC6-230ENST00000488543 GNA15P30679 374 aa12.94□□□□□ -0.34
HDAC6-230ENST00000488543 CDK7P50613 346 aa12.94□□□□□ -0.34
HDAC6-230ENST00000488543 ATP1A2P50993 1020 aa12.94□□□□□ -0.34
HDAC6-230ENST00000488543 GUCY2DQ02846 1103 aa12.94□□□□□ -0.34
HDAC6-230ENST00000488543 TWF2Q6IBS0 349 aaKnown RBP12.94□□□□□ -0.34
HDAC6-230ENST00000488543 PEX26Q7Z412 305 aa12.94□□□□□ -0.34
HDAC6-230ENST00000488543 KLHL7Q8IXQ5 586 aa12.94□□□□□ -0.34
HDAC6-230ENST00000488543 FAM76AQ8TAV0 307 aa12.94□□□□□ -0.34
HDAC6-230ENST00000488543 DIS3LQ8TF46 1054 aaKnown RBP12.94□□□□□ -0.34
HDAC6-230ENST00000488543 TAF4BQ92750 862 aa12.94□□□□□ -0.34
HDAC6-230ENST00000488543 HES6Q96HZ4 224 aa12.94□□□□□ -0.34
HDAC6-230ENST00000488543 ZNF333Q96JL9 665 aa12.94□□□□□ -0.34
HDAC6-230ENST00000488543 ZMAT2Q96NC0 199 aaKnown RBP12.94□□□□□ -0.34
HDAC6-230ENST00000488543 EPB41L5Q9HCM4 733 aa12.94□□□□□ -0.34
HDAC6-230ENST00000488543 CISHQ9NSE2 258 aa12.94□□□□□ -0.34
HDAC6-230ENST00000488543 CHORDC1Q9UHD1 332 aaPredicted RBP12.94□□□□□ -0.34
HDAC6-230ENST00000488543 GTF3C4Q9UKN8 822 aa12.94□□□□□ -0.34
HDAC6-230ENST00000488543 PADI3Q9ULW8 664 aa12.94□□□□□ -0.34
HDAC6-230ENST00000488543 CES2O00748 559 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 CLSTN1O94985 981 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 ITGB3P05106 788 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 LPIN1Q14693 890 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 TMEM132DQ14C87 1099 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 PCBP1Q15365 356 aaKnown RBP eCLIP12.93□□□□□ -0.34
HDAC6-230ENST00000488543 GLRA4Q5JXX5 417 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 FBXO47Q5MNV8 452 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 CCDC70Q6NSX1 233 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 SCARA5Q6ZMJ2 495 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 ZNF653Q96CK0 615 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 ZSWIM1Q9BR11 485 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 BCO2Q9BYV7 579 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 RASSF4Q9H2L5 321 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 CTTNBP2NLQ9P2B4 639 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 DDX3YO15523 660 aaKnown RBP12.93□□□□□ -0.34
HDAC6-230ENST00000488543 MGEA5O60502 916 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 HEXIM1O94992 359 aaKnown RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms