RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 WEE2P0C1S8 567 aa18.98■□□□□ 0.63
VIM-206ENST00000487938 CYP4A22Q5TCH4 519 aa18.98■□□□□ 0.63
VIM-206ENST00000487938 SPATA21Q7Z572 469 aa18.98■□□□□ 0.63
VIM-206ENST00000487938 PCYT2Q99447 389 aa18.98■□□□□ 0.63
VIM-206ENST00000487938 ADAM33Q9BZ11 813 aa18.98■□□□□ 0.63
VIM-206ENST00000487938 MTMR12Q9C0I1 747 aa18.98■□□□□ 0.63
VIM-206ENST00000487938 ZNF112Q9UJU3 913 aa18.98■□□□□ 0.63
VIM-206ENST00000487938 DNALI1O14645 258 aaPredicted RBP18.97■□□□□ 0.63
VIM-206ENST00000487938 TJP3O95049 919 aa18.97■□□□□ 0.63
VIM-206ENST00000487938 PSMC4P43686 418 aa18.97■□□□□ 0.63
VIM-206ENST00000487938 ZNF132P52740 706 aa18.97■□□□□ 0.63
VIM-206ENST00000487938 PLCB3Q01970 1234 aa18.97■□□□□ 0.63
VIM-206ENST00000487938 PRKG1Q13976 671 aa18.97■□□□□ 0.63
VIM-206ENST00000487938 DNAJC24Q6P3W2 148 aa18.97■□□□□ 0.63
VIM-206ENST00000487938 SPOCD1Q6ZMY3 1216 aa18.97■□□□□ 0.63
VIM-206ENST00000487938 ARHGEF18Q6ZSZ5 1173 aa18.97■□□□□ 0.63
VIM-206ENST00000487938 PNMA8AQ86V59 439 aaPredicted RBP18.97■□□□□ 0.63
VIM-206ENST00000487938 ANKRD35Q8N283 1001 aa18.97■□□□□ 0.63
VIM-206ENST00000487938 RBM41Q96IZ5 413 aaKnown RBP18.97■□□□□ 0.63
VIM-206ENST00000487938 BAIAP2L1Q9UHR4 511 aa18.97■□□□□ 0.63
VIM-206ENST00000487938 EXOC1LA0A1B0GW35 172 aa18.97■□□□□ 0.63
VIM-206ENST00000487938 SPDYE16A6NNV3 312 aaPredicted RBP18.97■□□□□ 0.63
VIM-206ENST00000487938 PECAM1P16284 738 aaPredicted RBP18.97■□□□□ 0.63
VIM-206ENST00000487938 GCAP28676 217 aa18.97■□□□□ 0.63
VIM-206ENST00000487938 FOXN2P32314 431 aa18.97■□□□□ 0.63
VIM-206ENST00000487938 LMNB2Q03252 620 aa18.97■□□□□ 0.63
VIM-206ENST00000487938 E2F5Q15329 346 aa18.97■□□□□ 0.63
VIM-206ENST00000487938 CGB2Q6NT52 195 aa18.97■□□□□ 0.63
VIM-206ENST00000487938 GPAT2Q6NUI2 795 aa18.97■□□□□ 0.63
VIM-206ENST00000487938 CCDC91Q7Z6B0 441 aa18.97■□□□□ 0.63
VIM-206ENST00000487938 RELL1Q8IUW5 271 aa18.97■□□□□ 0.63
VIM-206ENST00000487938 WDTC1Q8N5D0 677 aa18.97■□□□□ 0.63
VIM-206ENST00000487938 PRPF31Q8WWY3 499 aaKnown RBP18.97■□□□□ 0.63
VIM-206ENST00000487938 NIFKQ9BYG3 293 aaKnown RBP18.97■□□□□ 0.63
VIM-206ENST00000487938 ECT2Q9H8V3 914 aa18.97■□□□□ 0.63
VIM-206ENST00000487938 PNMA3Q9UL41 463 aa18.97■□□□□ 0.63
VIM-206ENST00000487938 ADCY3O60266 1144 aa18.96■□□□□ 0.63
VIM-206ENST00000487938 ASS1P00966 412 aaKnown RBP18.96■□□□□ 0.63
VIM-206ENST00000487938 SRGAP2CP0DJJ0 459 aa18.96■□□□□ 0.63
VIM-206ENST00000487938 KCNJ2P63252 427 aa18.96■□□□□ 0.63
VIM-206ENST00000487938 EAPPQ56P03 285 aaPredicted RBP18.96■□□□□ 0.63
VIM-206ENST00000487938 SCARA5Q6ZMJ2 495 aa18.96■□□□□ 0.63
VIM-206ENST00000487938 ALLCQ8N6M5 410 aa18.96■□□□□ 0.63
VIM-206ENST00000487938 UBR7Q8N806 425 aa18.96■□□□□ 0.63
VIM-206ENST00000487938 MAML1Q92585 1016 aa18.96■□□□□ 0.63
VIM-206ENST00000487938 C12orf42Q96LP6 360 aa18.96■□□□□ 0.63
VIM-206ENST00000487938 MAGEB18Q96M61 343 aa18.96■□□□□ 0.63
VIM-206ENST00000487938 CFAP57Q96MR6 1250 aa18.96■□□□□ 0.63
VIM-206ENST00000487938 TMEM121Q9BTD3 319 aa18.96■□□□□ 0.63
VIM-206ENST00000487938 TMEM134Q9H6X4 195 aa18.96■□□□□ 0.63
VIM-206ENST00000487938 C10orf88Q9H8K7 445 aa18.96■□□□□ 0.63
VIM-206ENST00000487938 CISHQ9NSE2 258 aa18.96■□□□□ 0.63
VIM-206ENST00000487938 EURLQ9NYK6 297 aa18.96■□□□□ 0.63
VIM-206ENST00000487938 SAE1Q9UBE0 346 aaPredicted RBP18.96■□□□□ 0.63
VIM-206ENST00000487938 LRRD1A4D1F6 860 aa18.95■□□□□ 0.62
VIM-206ENST00000487938 C19orf81C9J6K1 198 aa18.95■□□□□ 0.62
VIM-206ENST00000487938 ATP2A1O14983 1001 aa18.95■□□□□ 0.62
VIM-206ENST00000487938 ATP6V1G2O95670 118 aa18.95■□□□□ 0.62
VIM-206ENST00000487938 IFNB1P01574 187 aa18.95■□□□□ 0.62
VIM-206ENST00000487938 NCALDP61601 193 aa18.95■□□□□ 0.62
VIM-206ENST00000487938 ANGEL2Q5VTE6 544 aaKnown RBP18.95■□□□□ 0.62
VIM-206ENST00000487938 FAM47EQ6ZV65 393 aa18.95■□□□□ 0.62
VIM-206ENST00000487938 TFAP2BQ92481 460 aa18.95■□□□□ 0.62
VIM-206ENST00000487938 THOC1Q96FV9 657 aaKnown RBP18.95■□□□□ 0.62
VIM-206ENST00000487938 KIF9Q9HAQ2 790 aa18.95■□□□□ 0.62
VIM-206ENST00000487938 HOXC10Q9NYD6 342 aa18.95■□□□□ 0.62
VIM-206ENST00000487938 ARL2BPQ9Y2Y0 163 aa18.95■□□□□ 0.62
VIM-206ENST00000487938 TCRBV5S1A1TA0A578 114 aa18.95■□□□□ 0.62
VIM-206ENST00000487938 GOLGA8SH3BPF8 625 aa18.95■□□□□ 0.62
VIM-206ENST00000487938 GOLGA8MH3BSY2 632 aa18.95■□□□□ 0.62
VIM-206ENST00000487938 BANF1O75531 89 aa18.95■□□□□ 0.62
VIM-206ENST00000487938 CALB1P05937 261 aa18.95■□□□□ 0.62
VIM-206ENST00000487938 TAC1P20366 129 aa18.95■□□□□ 0.62
VIM-206ENST00000487938 WDR4P57081 412 aaKnown RBP18.95■□□□□ 0.62
VIM-206ENST00000487938 GALNTL6Q49A17 601 aa18.95■□□□□ 0.62
VIM-206ENST00000487938 EEPD1Q7L9B9 569 aa18.95■□□□□ 0.62
VIM-206ENST00000487938 BRSK2Q8IWQ3 736 aa18.95■□□□□ 0.62
VIM-206ENST00000487938 FITM2Q8N6M3 262 aa18.95■□□□□ 0.62
VIM-206ENST00000487938 ZNF668Q96K58 619 aaPredicted RBP18.95■□□□□ 0.62
VIM-206ENST00000487938 RMDN2Q96LZ7 410 aa18.95■□□□□ 0.62
VIM-206ENST00000487938 VPS37BQ9H9H4 285 aa18.95■□□□□ 0.62
VIM-206ENST00000487938 NRBP2Q9NSY0 501 aa18.95■□□□□ 0.62
VIM-206ENST00000487938 DOCK1Q14185 1865 aa18.95■□□□□ 0.62
VIM-206ENST00000487938 SGK1O00141 431 aa18.94■□□□□ 0.62
VIM-206ENST00000487938 UBA1P22314 1058 aaKnown RBP18.94■□□□□ 0.62
VIM-206ENST00000487938 ICAM3P32942 547 aa18.94■□□□□ 0.62
VIM-206ENST00000487938 STAT5BP51692 787 aa18.94■□□□□ 0.62
VIM-206ENST00000487938 DYNLT1P63172 113 aa18.94■□□□□ 0.62
VIM-206ENST00000487938 WDR72Q3MJ13 1102 aa18.94■□□□□ 0.62
VIM-206ENST00000487938 ERICH1Q86X53 443 aa18.94■□□□□ 0.62
VIM-206ENST00000487938 TBC1D31Q96DN5 1066 aa18.94■□□□□ 0.62
VIM-206ENST00000487938 NOD2Q9HC29 1040 aa18.94■□□□□ 0.62
VIM-206ENST00000487938 PPP1R1BQ9UD71 204 aaPredicted RBP18.94■□□□□ 0.62
VIM-206ENST00000487938 PRKAG3Q9UGI9 489 aa18.94■□□□□ 0.62
VIM-206ENST00000487938 EPB41L3Q9Y2J2 1087 aaPredicted RBP18.94■□□□□ 0.62
VIM-206ENST00000487938 hCG_1818297A0A087WSY0 165 aa18.94■□□□□ 0.62
VIM-206ENST00000487938 IGKV6D-21A0A0A0MT36 114 aa18.94■□□□□ 0.62
VIM-206ENST00000487938 MARK3P27448 753 aa18.94■□□□□ 0.62
VIM-206ENST00000487938 OSTNP61366 133 aa18.94■□□□□ 0.62
VIM-206ENST00000487938 TFAMQ00059 246 aaKnown RBP18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms