RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 SNX25Q9H3E2 840 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 IL21Q9HBE4 155 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 FNIP2Q9P278 1114 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 CTNND2Q9UQB3 1225 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 PCDHA5Q9Y5H7 936 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 SNX9Q9Y5X1 595 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 IRAK3Q9Y616 596 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 CDY1Q9Y6F8 540 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 STYXL1Q9Y6J8 313 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.64□□□□□ -1.03
USP40-216ENST00000485943 OR6C75A6NL08 312 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 KPNA7A9QM74 516 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 ABLIM1O14639 778 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 LINC01565O15544 149 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 KLRC4O43908 158 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 LINC00271P0C7V0 271 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 SPATA31D3P0C874 917 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 CCDC192P0DO97 292 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 EPCAMP16422 314 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 SP100P23497 879 aaPredicted RBP8.64□□□□□ -1.03
USP40-216ENST00000485943 PCSK1P29120 753 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 ADSSP30520 456 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 LRPAP1P30533 357 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 GBP2P32456 591 aaPredicted RBP8.64□□□□□ -1.03
USP40-216ENST00000485943 OR1D2P34982 312 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 ALDH1A3P47895 512 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 KCNQ1P51787 676 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 GUCY2FP51841 1108 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 FKBP3Q00688 224 aaKnown RBP8.64□□□□□ -1.03
USP40-216ENST00000485943 LRRC63Q05C16 580 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 SOX4Q06945 474 aaPredicted RBP8.64□□□□□ -1.03
USP40-216ENST00000485943 CYP24A1Q07973 514 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 PAK1Q13153 545 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 BMT2Q1RMZ1 405 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 ZNF699Q32M78 642 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 XKR4Q5GH76 650 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 RTP2Q5QGT7 225 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 C9orf57Q5W0N0 161 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 ALKAL1Q6UXT8 129 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 SPATA31D4Q6ZUB0 917 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 EPM2AIP1Q7L775 607 aaPredicted RBP8.64□□□□□ -1.03
USP40-216ENST00000485943 CBWD2Q8IUF1 395 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 GPR65Q8IYL9 337 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 SMYD4Q8IYR2 804 aaPredicted RBP8.64□□□□□ -1.03
USP40-216ENST00000485943 TRIML1Q8N9V2 468 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 KIAA0895Q8NCT3 520 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 KREMEN2Q8NCW0 462 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 GLIS3Q8NEA6 775 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 ANKRD20A12PQ8NF67 263 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 BCL7CQ8WUZ0 217 aaPredicted RBP8.64□□□□□ -1.03
USP40-216ENST00000485943 PIK3R5Q8WYR1 880 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 SMG7Q92540 1137 aaKnown RBP8.64□□□□□ -1.03
USP40-216ENST00000485943 ERCC4Q92889 916 aaPredicted RBP8.64□□□□□ -1.03
USP40-216ENST00000485943 PBXIP1Q96AQ6 731 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 HPDLQ96IR7 371 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 RPGRIP1Q96KN7 1286 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 SENP8Q96LD8 212 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 HAPLN2Q9GZV7 340 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 CYP4F11Q9HBI6 524 aa8.64□□□□□ -1.03
USP40-216ENST00000485943 TIMM13Q9Y5L4 95 aaPredicted RBP8.64□□□□□ -1.03
USP40-216ENST00000485943 ATP8B3O60423 1300 aa8.63□□□□□ -1.03
USP40-216ENST00000485943 CCDC195A0A1B0GUA6 201 aa8.63□□□□□ -1.03
USP40-216ENST00000485943 F8W810 466 aa8.63□□□□□ -1.03
USP40-216ENST00000485943 TGM5O43548 720 aa8.63□□□□□ -1.03
USP40-216ENST00000485943 B4GALT3O60512 393 aa8.63□□□□□ -1.03
USP40-216ENST00000485943 C8AP07357 584 aa8.63□□□□□ -1.03
USP40-216ENST00000485943 FGFR3P22607 806 aa8.63□□□□□ -1.03
USP40-216ENST00000485943 ANXA13P27216 316 aa8.63□□□□□ -1.03
USP40-216ENST00000485943 LHX1P48742 406 aa8.63□□□□□ -1.03
USP40-216ENST00000485943 CLCN4P51793 760 aa8.63□□□□□ -1.03
USP40-216ENST00000485943 VAMP7P51809 220 aa8.63□□□□□ -1.03
USP40-216ENST00000485943 LILRA4P59901 499 aa8.63□□□□□ -1.03
USP40-216ENST00000485943 MYBPC2Q14324 1141 aa8.63□□□□□ -1.03
USP40-216ENST00000485943 PSMD6Q15008 389 aa8.63□□□□□ -1.03
USP40-216ENST00000485943 EDRF1Q3B7T1 1238 aa8.63□□□□□ -1.03
USP40-216ENST00000485943 MGAT5BQ3V5L5 792 aa8.63□□□□□ -1.03
USP40-216ENST00000485943 ZNF667Q5HYK9 610 aa8.63□□□□□ -1.03
USP40-216ENST00000485943 TAS1R1Q7RTX1 841 aa8.63□□□□□ -1.03
USP40-216ENST00000485943 FAM114A1Q8IWE2 563 aa8.63□□□□□ -1.03
USP40-216ENST00000485943 C12orf56Q8IXR9 622 aa8.63□□□□□ -1.03
USP40-216ENST00000485943 ELOA2Q8IYF1 753 aaPredicted RBP8.63□□□□□ -1.03
USP40-216ENST00000485943 LRRC52Q8N7C0 313 aa8.63□□□□□ -1.03
USP40-216ENST00000485943 TDRD5Q8NAT2 981 aaKnown RBP8.63□□□□□ -1.03
USP40-216ENST00000485943 OR6B3Q8NGW1 331 aa8.63□□□□□ -1.03
USP40-216ENST00000485943 SLC7A14Q8TBB6 771 aa8.63□□□□□ -1.03
USP40-216ENST00000485943 NELFBQ8WX92 580 aa8.63□□□□□ -1.03
USP40-216ENST00000485943 DHTKD1Q96HY7 919 aaPredicted RBP8.63□□□□□ -1.03
USP40-216ENST00000485943 ZNF512Q96ME7 567 aaPredicted RBP8.63□□□□□ -1.03
USP40-216ENST00000485943 SEPT5Q99719 369 aaPredicted RBP8.63□□□□□ -1.03
USP40-216ENST00000485943 STRA6Q9BX79 667 aa8.63□□□□□ -1.03
USP40-216ENST00000485943 SLC6A16Q9GZN6 736 aa8.63□□□□□ -1.03
USP40-216ENST00000485943 IKZF4Q9H2S9 585 aa8.63□□□□□ -1.03
USP40-216ENST00000485943 SLITRK6Q9H5Y7 841 aa8.63□□□□□ -1.03
USP40-216ENST00000485943 METTL14Q9HCE5 456 aaKnown RBP8.63□□□□□ -1.03
USP40-216ENST00000485943 INTS13Q9NVM9 706 aa8.63□□□□□ -1.03
USP40-216ENST00000485943 NXF1Q9UBU9 619 aaKnown RBP8.63□□□□□ -1.03
USP40-216ENST00000485943 GPSM3Q9Y4H4 160 aa8.63□□□□□ -1.03
USP40-216ENST00000485943 ANK1P16157 1881 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 SZT2Q5T011 3432 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 TGFB1I1O43294 461 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms